Lcy02g005530 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g005530
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationChr02: 7243361 .. 7243714 (+)
RNA-Seq ExpressionLcy02g005530
SyntenyLcy02g005530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACGATTCAACCTCGATTCAGCCCACAAGCCAGTCCGTTATCGACCTCTACGCCAGCCCATACTACCTTCATCATTCTGATGGCACGAATCGTGTGCTTGTCTCTAAGCTTCTCACTGAGACAAATTATTCTTCCTGGCATCAAGCGATGATGATCGGCCTCACGGTGAAGAACAAGGTAGGGTTCATCGACGACACCTTAACCTGTCCGACTGGCAATCTTCTTCGATCCTGGACAATCTGCAACAGTGTGGTGAAATCGTGGATTCTAAACGCCATTTCGAAAGAGATTTCAGCAAGTATCAACTACTCGGATTCAGTCCGAGATATATGGATTGATCTCCAATAG

mRNA sequence

ATGGCGGACGATTCAACCTCGATTCAGCCCACAAGCCAGTCCGTTATCGACCTCTACGCCAGCCCATACTACCTTCATCATTCTGATGGCACGAATCGTGTGCTTGTCTCTAAGCTTCTCACTGAGACAAATTATTCTTCCTGGCATCAAGCGATGATGATCGGCCTCACGGTGAAGAACAAGGTAGGGTTCATCGACGACACCTTAACCTGTCCGACTGGCAATCTTCTTCGATCCTGGACAATCTGCAACAGTGTGGTGAAATCGTGGATTCTAAACGCCATTTCGAAAGAGATTTCAGCAAGTATCAACTACTCGGATTCAGTCCGAGATATATGGATTGATCTCCAATAG

Coding sequence (CDS)

ATGGCGGACGATTCAACCTCGATTCAGCCCACAAGCCAGTCCGTTATCGACCTCTACGCCAGCCCATACTACCTTCATCATTCTGATGGCACGAATCGTGTGCTTGTCTCTAAGCTTCTCACTGAGACAAATTATTCTTCCTGGCATCAAGCGATGATGATCGGCCTCACGGTGAAGAACAAGGTAGGGTTCATCGACGACACCTTAACCTGTCCGACTGGCAATCTTCTTCGATCCTGGACAATCTGCAACAGTGTGGTGAAATCGTGGATTCTAAACGCCATTTCGAAAGAGATTTCAGCAAGTATCAACTACTCGGATTCAGTCCGAGATATATGGATTGATCTCCAATAG

Protein sequence

MADDSTSIQPTSQSVIDLYASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKNKVGFIDDTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ
Homology
BLAST of Lcy02g005530 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.7e-32
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 1   MADDSTSIQPTSQSVIDL-----YASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIG 60
           MADD  ++  ++ ++I L     Y +PY+LHHSD T+ VLVS  LT  NY+SW ++M+I 
Sbjct: 1   MADDFINLTASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIA 60

Query: 61  LTVKNKVGFIDDTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWID 118
           LTVKNKVGF+D ++  PTG+LL SW ICN+VV SWILN++SKEISASI +SDS R+IW+D
Sbjct: 61  LTVKNKVGFVDGSIVRPTGDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLD 120

BLAST of Lcy02g005530 vs. ExPASy TrEMBL
Match: A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.7e-31
Identity = 64/117 (54.70%), Postives = 93/117 (79.49%), Query Frame = 0

Query: 1   MADDSTSIQPTSQSVIDLYASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKN 60
           ++  ST+    + S+++ Y++PYYLHHSD T+ VLVS LL E NY+SW ++M+I LTVKN
Sbjct: 21  VSSSSTTHGVATTSILENYSNPYYLHHSDNTSLVLVSDLLNENNYTSWSRSMIIALTVKN 80

Query: 61  KVGFIDDTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ 118
           K+GF+D +++ P+G  + SW ICN+VV +W+LN++SKEISAS+ +SDS RDIW+DLQ
Sbjct: 81  KIGFVDGSISRPSGAQINSWKICNNVVIAWLLNSLSKEISASVLFSDSARDIWLDLQ 137

BLAST of Lcy02g005530 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 59/108 (54.63%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 10  PTSQSVIDLYASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKNKVGFIDDTL 69
           P +  V++ +A+PY+LHHSD T+ VLVS LLT+ NY+SW ++++I LTVKNK+GF+D ++
Sbjct: 16  PMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTVKNKIGFVDGSI 75

Query: 70  TCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ 118
           + PT   L SW ICN+VV SWI N++SK+ISAS+ +SDS  +IW+DL+
Sbjct: 76  SRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLK 123

BLAST of Lcy02g005530 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.4e-27
Identity = 64/116 (55.17%), Postives = 88/116 (75.86%), Query Frame = 0

Query: 3   DDSTSIQPTSQ-SVIDLYASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKNK 62
           DDS+S   +S  S +D   +PYYLHH+D T  VLV++ LTE NYSSW ++M+I L++KNK
Sbjct: 21  DDSSSPNSSSSVSGVDSVLNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALSIKNK 80

Query: 63  VGFIDDTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ 118
           +GFID +++ P G LL +W   N VV +WILN++SKEIS+SI +S+S RDIWIDL+
Sbjct: 81  LGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISSSILFSESARDIWIDLK 136

BLAST of Lcy02g005530 vs. ExPASy TrEMBL
Match: A0A7J0FKC9 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_13g0000100 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.1e-25
Identity = 62/101 (61.39%), Postives = 79/101 (78.22%), Query Frame = 0

Query: 20  ASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKNKVGFIDDTLTCPTG---NL 79
           +SPY+LHHSDG   VLVS+ LT  NY+SW++AM+I L+VKNK+GFID ++T P G   NL
Sbjct: 268 SSPYFLHHSDGPELVLVSQSLTGDNYASWNRAMIIALSVKNKLGFIDGSITKPEGNDTNL 327

Query: 80  LRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ 118
           L SW   N+VV SWILN++SKEISASI +S S  +IWIDL+
Sbjct: 328 LNSWIRNNNVVISWILNSVSKEISASIIFSASANEIWIDLK 368

BLAST of Lcy02g005530 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-31
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 1   MADDSTSIQPTSQSVIDL-----YASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIG 60
           MADD  ++  ++ ++I L     Y +PY+LHHSD T+ VLVS  LT  NY+SW ++M+I 
Sbjct: 1   MADDFINLTASTSTIIALIAIEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIA 60

Query: 61  LTVKNKVGFIDDTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWID 118
           LTVKNKVGF+D ++  PTG+LL SW ICN+VV SWILN++SKEISASI +SDS R+IW+D
Sbjct: 61  LTVKNKVGFVDGSIVRPTGDLLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLD 120

BLAST of Lcy02g005530 vs. NCBI nr
Match: XP_038874906.1 (uncharacterized protein LOC120067409 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-31
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 0

Query: 6   TSIQPTSQSVIDLYASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKNKVGFI 65
           T+  P  QS +  Y+  Y+LHHSD T+ VLVS LLT++NYSSW Q+M +  TVKNK+GFI
Sbjct: 25  TTYAPLVQSFVKQYSCSYFLHHSDSTSLVLVSDLLTKSNYSSWSQSMTLSFTVKNKMGFI 84

Query: 66  DDTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ 118
           D TL  P G+L  SW ICNSVV +WI NA+SK+I+AS+N+SDS R+IW+DLQ
Sbjct: 85  DGTLPKPIGDLQNSWIICNSVVTTWIFNALSKKIAASVNFSDSTREIWLDLQ 136

BLAST of Lcy02g005530 vs. NCBI nr
Match: XP_022142327.1 (uncharacterized protein LOC111012468 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 3.5e-31
Identity = 64/117 (54.70%), Postives = 93/117 (79.49%), Query Frame = 0

Query: 1   MADDSTSIQPTSQSVIDLYASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKN 60
           ++  ST+    + S+++ Y++PYYLHHSD T+ VLVS LL E NY+SW ++M+I LTVKN
Sbjct: 21  VSSSSTTHGVATTSILENYSNPYYLHHSDNTSLVLVSDLLNENNYTSWSRSMIIALTVKN 80

Query: 61  KVGFIDDTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ 118
           K+GF+D +++ P+G  + SW ICN+VV +W+LN++SKEISAS+ +SDS RDIW+DLQ
Sbjct: 81  KIGFVDGSISRPSGAQINSWKICNNVVIAWLLNSLSKEISASVLFSDSARDIWLDLQ 137

BLAST of Lcy02g005530 vs. NCBI nr
Match: XP_038902375.1 (uncharacterized protein LOC120089012 [Benincasa hispida])

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-30
Identity = 67/113 (59.29%), Postives = 87/113 (76.99%), Query Frame = 0

Query: 5   STSIQPTSQSVIDLYASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKNKVGF 64
           S S+ PT   V++ Y + Y+LHHSD TN V+VS LLTETNY+SW Q M+IGL VKNK+GF
Sbjct: 29  SMSLNPT---VLEQYTNSYFLHHSDSTNLVIVSNLLTETNYTSWSQVMVIGLIVKNKLGF 88

Query: 65  IDDTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ 118
           +D ++   TG+LL SW IC+ VV +WILN++ KEIS SIN++DS R IW+DLQ
Sbjct: 89  VDGSIPRSTGDLLSSWIICDGVVTAWILNSLPKEISISINFADSARKIWVDLQ 138

BLAST of Lcy02g005530 vs. NCBI nr
Match: XP_038887186.1 (uncharacterized protein LOC120077373 [Benincasa hispida])

HSP 1 Score: 137.5 bits (345), Expect = 7.4e-29
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 0

Query: 7   SIQPTSQSVIDLYASPYYLHHSDGTNRVLVSKLLTETNYSSWHQAMMIGLTVKNKVGFID 66
           +++ +  S ++ Y +PY+LH SD T+ VLVS LLTE+NY SW QAM IGLTVKNK+GFI+
Sbjct: 18  NVRASLSSFLEQYQNPYFLHPSDSTSLVLVSNLLTESNYDSWSQAMKIGLTVKNKLGFIN 77

Query: 67  DTLTCPTGNLLRSWTICNSVVKSWILNAISKEISASINYSDSVRDIWIDLQ 118
             +  P+G LL SW I N +V +WILN++SKEI ASIN+SDS ++IW DLQ
Sbjct: 78  GEIPRPSGELLSSWIIYNGIVTTWILNSLSKEIFASINFSDSAQEIWADLQ 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DIP87.7e-3257.38uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1CMF81.7e-3154.70uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1DNP71.4e-2854.63uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DKR84.4e-2755.17uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A7J0FKC94.1e-2561.39Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa... [more]
Match NameE-valueIdentityDescription
XP_022152756.11.6e-3157.38uncharacterized protein LOC111020399 [Momordica charantia][more]
XP_038874906.12.7e-3159.82uncharacterized protein LOC120067409 [Benincasa hispida][more]
XP_022142327.13.5e-3154.70uncharacterized protein LOC111012468 [Momordica charantia][more]
XP_038902375.11.0e-3059.29uncharacterized protein LOC120089012 [Benincasa hispida][more]
XP_038887186.17.4e-2957.66uncharacterized protein LOC120077373 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 26..70
e-value: 3.2E-14
score: 52.4
NoneNo IPR availablePANTHERPTHR37610:SF53SUBFAMILY NOT NAMEDcoord: 16..117
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 16..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g005530.1Lcy02g005530.1mRNA