Lcy02g004530 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g004530
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr02: 5930136 .. 5930510 (-)
RNA-Seq ExpressionLcy02g004530
SyntenyLcy02g004530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAAAATCGAGCGAAAATGGTCGATTAAGGCTCTGGAGACTAAGGCGATCTGGGATGGGCTCGAGAAGATTATTCCTACCTGCTCTCAAAAGGATATGCCCATAGAGGTAGAGACTGATTCCATGGAAGTCGTTAAGGCGCTGACTGGAGACGACGAGAACCTGTCGGTATTGAAATCCATCACAGAGCCTATCTCCACTTTGACTTCTCGTGTGCGTGAGATCAAATTCCGCCATTGTAGAAGAGAATCAAACACAGTAGTCCACTGTGTAGCTAGATTTGCTTGTAATTTTGACTTTGATGGATCTCAGGAACAATCCGTCTTGAGGGAAAAGGGGCTCGCTTTTTGGTCTCTTGAGCTTCCCCCATAG

mRNA sequence

ATGCGAAAAATCGAGCGAAAATGGTCGATTAAGGCTCTGGAGACTAAGGCGATCTGGGATGGGCTCGAGAAGATTATTCCTACCTGCTCTCAAAAGGATATGCCCATAGAGGTAGAGACTGATTCCATGGAAGTCGTTAAGGCGCTGACTGGAGACGACGAGAACCTGTCGGTATTGAAATCCATCACAGAGCCTATCTCCACTTTGACTTCTCGTGTGCGTGAGATCAAATTCCGCCATTGTAGAAGAGAATCAAACACAGTAGTCCACTGTGTAGCTAGATTTGCTTGTAATTTTGACTTTGATGGATCTCAGGAACAATCCGTCTTGAGGGAAAAGGGGCTCGCTTTTTGGTCTCTTGAGCTTCCCCCATAG

Coding sequence (CDS)

ATGCGAAAAATCGAGCGAAAATGGTCGATTAAGGCTCTGGAGACTAAGGCGATCTGGGATGGGCTCGAGAAGATTATTCCTACCTGCTCTCAAAAGGATATGCCCATAGAGGTAGAGACTGATTCCATGGAAGTCGTTAAGGCGCTGACTGGAGACGACGAGAACCTGTCGGTATTGAAATCCATCACAGAGCCTATCTCCACTTTGACTTCTCGTGTGCGTGAGATCAAATTCCGCCATTGTAGAAGAGAATCAAACACAGTAGTCCACTGTGTAGCTAGATTTGCTTGTAATTTTGACTTTGATGGATCTCAGGAACAATCCGTCTTGAGGGAAAAGGGGCTCGCTTTTTGGTCTCTTGAGCTTCCCCCATAG

Protein sequence

MRKIERKWSIKALETKAIWDGLEKIIPTCSQKDMPIEVETDSMEVVKALTGDDENLSVLKSITEPISTLTSRVREIKFRHCRRESNTVVHCVARFACNFDFDGSQEQSVLREKGLAFWSLELPP
Homology
The following BLAST results are available for this feature:
BLAST of Lcy02g004530 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g004530 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g004530 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g004530 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..96
e-value: 1.2E-13
score: 51.0
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..100
e-value: 1.9E-9
score: 39.6
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 9..94
e-value: 1.01338E-10
score: 53.0868
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 9..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g004530.1Lcy02g004530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity