Lcy01g015360 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g015360
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA ligase
LocationChr01: 36854472 .. 36855317 (+)
RNA-Seq ExpressionLcy01g015360
SyntenyLcy01g015360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGATTTGACACATAAATCCCTCACTCCCCCACCGCGGTTTCCACGCTTTTTCCGGCGCCTCTCATAAAGCACAAAAAATACCGTCCTTATCCATTCACTTTTTCCCTCTTCCTTTTTTGCCCCCAAACTATAAATCAATCCCCTTCCTTTCCTCATCTTATCTCCATCTCCATTACTGTTACCCACTCACTTCAAGAAAAACAGAAAAAATCCCTCTCTGATTCTGATTCTAAAATGTTGGCCGATTTTCATCAGTCTTCTTCTCTCGCTCACAAGCTCAAGTCCTCCATCTGCTGTTTCCATGGCTCCGAAGATGATGATTTTCTCCAGTCTCCGTCCAAGACGCCGACCAGATCGCCGTGTTCGTGGTTGAAATCGACGGCCAGTGAATTCCCTGAGTTGCTCGACCGGTGCCGCTACCTGGTGGCTCGGATCGGTCGCGGCCGAAAGAGGTACCTTGGCTCCGTCGACTTTAGCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTTCCCTTCAGGGATTTTACGGCCAGATTGCCGCCGGCGATCAAGGAGCGTGTTCCGGCGGCCAAATTTGCCGGATCTCAAGATGGAATCACGATTTCCGCTTGTGGATGAGCTTTTTTTTTTTTTTAATTACTCAACGGAACTTGAGATTTTCATTTTTGCCGATTTTGATTGTAAATTTGCCCGTCGGAATTTCTTGTTGAAGTTCCAGTGAAATTGTAAATATATATCTTTTTTGTATTTTCCTTTTTTTTTTGGCTGTTGATAAAATAAATATTCAAATTGTTCCAGTAATAAGTTTGCTTTCTAAA

mRNA sequence

CGGATTTGACACATAAATCCCTCACTCCCCCACCGCGGTTTCCACGCTTTTTCCGGCGCCTCTCATAAAGCACAAAAAATACCGTCCTTATCCATTCACTTTTTCCCTCTTCCTTTTTTGCCCCCAAACTATAAATCAATCCCCTTCCTTTCCTCATCTTATCTCCATCTCCATTACTGTTACCCACTCACTTCAAGAAAAACAGAAAAAATCCCTCTCTGATTCTGATTCTAAAATGTTGGCCGATTTTCATCAGTCTTCTTCTCTCGCTCACAAGCTCAAGTCCTCCATCTGCTGTTTCCATGGCTCCGAAGATGATGATTTTCTCCAGTCTCCGTCCAAGACGCCGACCAGATCGCCGTGTTCGTGGTTGAAATCGACGGCCAGTGAATTCCCTGAGTTGCTCGACCGGTGCCGCTACCTGGTGGCTCGGATCGGTCGCGGCCGAAAGAGGTACCTTGGCTCCGTCGACTTTAGCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTTCCCTTCAGGGATTTTACGGCCAGATTGCCGCCGGCGATCAAGGAGCGTGTTCCGGCGGCCAAATTTGCCGGATCTCAAGATGGAATCACGATTTCCGCTTGTGGATGAGCTTTTTTTTTTTTTTAATTACTCAACGGAACTTGAGATTTTCATTTTTGCCGATTTTGATTGTAAATTTGCCCGTCGGAATTTCTTGTTGAAGTTCCAGTGAAATTGTAAATATATATCTTTTTTGTATTTTCCTTTTTTTTTTGGCTGTTGATAAAATAAATATTCAAATTGTTCCAGTAATAAGTTTGCTTTCTAAA

Coding sequence (CDS)

ATGTTGGCCGATTTTCATCAGTCTTCTTCTCTCGCTCACAAGCTCAAGTCCTCCATCTGCTGTTTCCATGGCTCCGAAGATGATGATTTTCTCCAGTCTCCGTCCAAGACGCCGACCAGATCGCCGTGTTCGTGGTTGAAATCGACGGCCAGTGAATTCCCTGAGTTGCTCGACCGGTGCCGCTACCTGGTGGCTCGGATCGGTCGCGGCCGAAAGAGGTACCTTGGCTCCGTCGACTTTAGCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTTCCCTTCAGGGATTTTACGGCCAGATTGCCGCCGGCGATCAAGGAGCGTGTTCCGGCGGCCAAATTTGCCGGATCTCAAGATGGAATCACGATTTCCGCTTGTGGATGA

Protein sequence

MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVPAAKFAGSQDGITISACG
Homology
BLAST of Lcy01g015360 vs. ExPASy TrEMBL
Match: A0A6J1HE78 (uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC111462741 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.2e-53
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 0

Query: 1   MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRC 60
           ML  FH S + A KLKSS CCFHG + DDFL SPSK+PTRSPCSW KST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVPA 120
           RYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCREDDEFPFR+FTAR PP IKERVPA
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 AKFAGSQDGITI 133
           AKFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132

BLAST of Lcy01g015360 vs. ExPASy TrEMBL
Match: A0A6J1K7R1 (uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.7e-52
Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = 0

Query: 1   MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRC 60
           ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT+SPCSW KST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVPA 120
           RYL+ARI R RKRYL SVDF+YDSSSYALNF+DDCREDDEFPFRDFTAR PP IKER PA
Sbjct: 61  RYLLARIARRRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPA 120

Query: 121 AKFAGSQDGITI 133
           AKFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132

BLAST of Lcy01g015360 vs. ExPASy TrEMBL
Match: A0A6J1BQU1 (uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004768 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40
Identity = 95/137 (69.34%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRC 60
           MLADFH SSS AHKLKSSI CF  S+       PS   T+SPCSW KSTA+EFP+LLDRC
Sbjct: 1   MLADFHHSSSFAHKLKSSIGCFRASD------QPS---TKSPCSWFKSTAAEFPDLLDRC 60

Query: 61  RYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVP 120
           RYLVARIGRG R+RY  S DF+YDSSSYALNFEDD R DDEFP R+F ARLP     R+P
Sbjct: 61  RYLVARIGRGSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 120

Query: 121 AAKFAGSQDGI-TISAC 136
           AAKFAGSQ G+ T++AC
Sbjct: 121 AAKFAGSQAGVSTVAAC 123

BLAST of Lcy01g015360 vs. ExPASy TrEMBL
Match: A0A1S3BDX7 (uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.8e-33
Identity = 75/117 (64.10%), Postives = 83/117 (70.94%), Query Frame = 0

Query: 18  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGS 77
           S CCFH          PS TP  SPCSWLKSTA E   LL RCRY +AR+ R R  YL S
Sbjct: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64

Query: 78  VDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVPAA-KFAGSQDGITIS 134
            DFSYDSSSYALNF+DDCR+D +FPFRDFTAR PP +K+R+PAA KFAGS   I IS
Sbjct: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPIS 111

BLAST of Lcy01g015360 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.0e-24
Identity = 70/125 (56.00%), Postives = 82/125 (65.60%), Query Frame = 0

Query: 1   MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRC 60
           ML D+H   S   KLKSSI CF   +  DFL++   +  R+P S LKS A+EFPEL   C
Sbjct: 2   MLNDYH-PFSFTRKLKSSILCFR-RDHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMC 61

Query: 61  RYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDD-CREDDEFPFRDFTARLP--PAIKER 120
           R LVARIGR R+RY  S DF YD SSYALNFED+  R+DDEFP RDF +RLP  P    R
Sbjct: 62  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR 121

Query: 121 VPAAK 123
           +  AK
Sbjct: 122 LSPAK 124

BLAST of Lcy01g015360 vs. NCBI nr
Match: XP_022962228.1 (uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothetical protein SDJN03_08335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029495.1 hypothetical protein SDJN02_07834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.6 bits (553), Expect = 6.5e-53
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 0

Query: 1   MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRC 60
           ML  FH S + A KLKSS CCFHG + DDFL SPSK+PTRSPCSW KST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVPA 120
           RYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCREDDEFPFR+FTAR PP IKERVPA
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 AKFAGSQDGITI 133
           AKFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132

BLAST of Lcy01g015360 vs. NCBI nr
Match: XP_023546798.1 (uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 3.2e-52
Identity = 101/132 (76.52%), Postives = 110/132 (83.33%), Query Frame = 0

Query: 1   MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRC 60
           ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT SPCSW KST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTTSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVPA 120
           RYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCREDDEFPFR+FTAR PP IKERVPA
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 AKFAGSQDGITI 133
           AKFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132

BLAST of Lcy01g015360 vs. NCBI nr
Match: XP_022997531.1 (uncharacterized protein LOC111492424 [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 5.5e-52
Identity = 99/132 (75.00%), Postives = 110/132 (83.33%), Query Frame = 0

Query: 1   MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRC 60
           ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT+SPCSW KST  EF  +L RC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVPA 120
           RYL+ARI R RKRYL SVDF+YDSSSYALNF+DDCREDDEFPFRDFTAR PP IKER PA
Sbjct: 61  RYLLARIARRRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPA 120

Query: 121 AKFAGSQDGITI 133
           AKFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132

BLAST of Lcy01g015360 vs. NCBI nr
Match: XP_022131639.1 (uncharacterized protein LOC111004768 [Momordica charantia])

HSP 1 Score: 174.9 bits (442), Expect = 4.8e-40
Identity = 95/137 (69.34%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRC 60
           MLADFH SSS AHKLKSSI CF  S+       PS   T+SPCSW KSTA+EFP+LLDRC
Sbjct: 1   MLADFHHSSSFAHKLKSSIGCFRASD------QPS---TKSPCSWFKSTAAEFPDLLDRC 60

Query: 61  RYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVP 120
           RYLVARIGRG R+RY  S DF+YDSSSYALNFEDD R DDEFP R+F ARLP     R+P
Sbjct: 61  RYLVARIGRGSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 120

Query: 121 AAKFAGSQDGI-TISAC 136
           AAKFAGSQ G+ T++AC
Sbjct: 121 AAKFAGSQAGVSTVAAC 123

BLAST of Lcy01g015360 vs. NCBI nr
Match: XP_008445585.1 (PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 5.7e-33
Identity = 75/117 (64.10%), Postives = 83/117 (70.94%), Query Frame = 0

Query: 18  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGS 77
           S CCFH          PS TP  SPCSWLKSTA E   LL RCRY +AR+ R R  YL S
Sbjct: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64

Query: 78  VDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKERVPAA-KFAGSQDGITIS 134
            DFSYDSSSYALNF+DDCR+D +FPFRDFTAR PP +K+R+PAA KFAGS   I IS
Sbjct: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPIS 111

BLAST of Lcy01g015360 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-14
Identity = 52/127 (40.94%), Postives = 65/127 (51.18%), Query Frame = 0

Query: 13  HKLKSSICCFHGS---EDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARI-- 72
           H+++S ICC   +   E +  +    +   RSP  WLKSTA E  EL DRCR + +RI  
Sbjct: 20  HRMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYEWLKSTAQEL-ELRDRCRRVKSRIKV 79

Query: 73  ---------------GRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLP- 118
                              + Y G  DFSYD  SYALNFED+ R DD+  F +FTARLP 
Sbjct: 80  TCRNNNCAYNNCVHHHHHSQSYPG--DFSYDPLSYALNFEDNVRADDDGSFPNFTARLPQ 139

BLAST of Lcy01g015360 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 48/139 (34.53%), Postives = 65/139 (46.76%), Query Frame = 0

Query: 10  SLAHKLKSSIC---CF-------HGSEDDDFLQSPSKT--PTRSP-CSWLKSTASEFPEL 69
           SL  KLKS  C   CF       H +  DD   SP  T   T+SP    +K+ +      
Sbjct: 10  SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPSSPVTTEKSTQSPHGGGMKTKSPRLTRT 69

Query: 70  L----DRCRYLVARI--------GRGRKRYLGSVDFSYDSSSYALNFEDDCRED--DEFP 122
           L    ++C+ L+ R+        G G+     + DF YD SSYALNF+    +D  D FP
Sbjct: 70  LSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDEDDNIDRFP 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HE783.2e-5377.27uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
A0A6J1K7R12.7e-5275.00uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424... [more]
A0A6J1BQU12.3e-4069.34uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A1S3BDX72.8e-3364.10uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=... [more]
A0A6J1FP709.0e-2456.00uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460... [more]
Match NameE-valueIdentityDescription
XP_022962228.16.5e-5377.27uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothet... [more]
XP_023546798.13.2e-5276.52uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo][more]
XP_022997531.15.5e-5275.00uncharacterized protein LOC111492424 [Cucurbita maxima][more]
XP_022131639.14.8e-4069.34uncharacterized protein LOC111004768 [Momordica charantia][more]
XP_008445585.15.7e-3364.10PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT5G11070.12.9e-1440.94unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
AT5G35090.13.1e-0834.53unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168:SF61SUBFAMILY NOT NAMEDcoord: 9..114
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 9..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g015360.1Lcy01g015360.1mRNA