Lcy01g013450 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g013450
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type domain-containing protein
Location	Chr01: 34914873 .. 34915424 (-)
RNA-Seq Expression	Lcy01g013450
Synteny	Lcy01g013450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCCTCCTTCCTCCATTACTCTTCTTCTTCCTCTTCCATTTCCGTTATGTCCTCCGCCGATCCTCCTTCCGCCGCCTCCCCCGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCCTGCATTCGCGTCAAATCCACCCGCCCCCGCCCTAGACCCTCCGCCTCTCAGCTCCCTCTCCCGCCTTCCGCCGCCGACAATGTGGTGGTTCTCATGGTAGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTTCCCGCCCCCAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCAACGATTCTCTCCGCTGCATTCCCGATTGCCGCCACTGCTTCCACTCCGATTGCGTCGATGAATGGCTCCGTATGAGCGCCACTTGCCCGCTGTGTCGAAATTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAGTTCGCGCCTCTGGCTTCCAATGCCAGGTGA

mRNA sequence

ATTCCCTCCTTCCTCCATTACTCTTCTTCTTCCTCTTCCATTTCCGTTATGTCCTCCGCCGATCCTCCTTCCGCCGCCTCCCCCGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCCTGCATTCGCGTCAAATCCACCCGCCCCCGCCCTAGACCCTCCGCCTCTCAGCTCCCTCTCCCGCCTTCCGCCGCCGACAATGTGGTGGTTCTCATGGTAGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTTCCCGCCCCCAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCAACGATTCTCTCCGCTGCATTCCCGATTGCCGCCACTGCTTCCACTCCGATTGCGTCGATGAATGGCTCCGTATGAGCGCCACTTGCCCGCTGTGTCGAAATTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAGTTCGCGCCTCTGGCTTCCAATGCCAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCGATCCTCCTTCCGCCGCCTCCCCCGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCCTGCATTCGCGTCAAATCCACCCGCCCCCGCCCTAGACCCTCCGCCTCTCAGCTCCCTCTCCCGCCTTCCGCCGCCGACAATGTGGTGGTTCTCATGGTAGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTTCCCGCCCCCAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCAACGATTCTCTCCGCTGCATTCCCGATTGCCGCCACTGCTTCCACTCCGATTGCGTCGATGAATGGCTCCGTATGAGCGCCACTTGCCCGCTGTGTCGAAATTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAGTTCGCGCCTCTGGCTTCCAATGCCAGGTGA

Protein sequence

MSSADPPSAASPAGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR

Homology

[Close]

BLAST of Lcy01g013450 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-51
Identity = 105/167 (62.87%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 1   MSSADPPSAASPAGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPL 60
           MS   PP+    +GVGLGYGIAIAVSILV IS IML SY CIR KST      S   L L
Sbjct: 1   MSPISPPA----SGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDL 60

Query: 61  PPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRCIPD 120
           P  AA+    + +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + +RCIP+
Sbjct: 61  PSPAAE----VKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPE 120

Query: 121 CRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           C HCFH+DCVDEWLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 121 CNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of Lcy01g013450 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-27
Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 16  GLGYGIAIAVSILVFISTIMLVSYACIR-------VKSTRPRPRPSASQLPLPP------ 75
           GL YGI +++ IL+ I+TI L SY C R         + R R R   S   LPP      
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 76  ---SAADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYQPNDS 135
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DY+  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 136 LRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 164
           +R +PDC H FH +CVD WLR+  TCP+CR SP P+P  TP+++  P +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Lcy01g013450 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-26
Identity = 61/155 (39.35%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 16  GLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPLPPSAADNVVVLMVGL 75
           G  YGI +++ +L+ I+TI L SY C R + +    + +     +       ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 76  DGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPNDSLRCIPDCRHCFHSDCV 135
           D   I+SYPK++  E++       GP     C+ICL DY+    LR +PDC H FH  C+
Sbjct: 123 DEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 182

Query: 136 DEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 166
           D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 183 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]

BLAST of Lcy01g013450 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.2e-24
Identity = 76/195 (38.97%), Postives = 101/195 (51.79%), Query Frame = 0


Query: 6   PPSAASP---AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPLPP 65
           PP    P     +GLGY IAIA+  LV ISTI+L SY C R  ++R R   SA+      
Sbjct: 12  PPPVPIPTYITSLGLGYSIAIALGFLVLISTIILSSYICCR--ASRLRFSASAANANANA 71

Query: 66  SAADNVV------------------VLMVGLDGSIIESYPK---------LVLGESRRLP 125
           S +D  V                  V++ GLD S+I SYPK         +V G+     
Sbjct: 72  SFSDRGVIVPRIIFVAEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDG 131

Query: 126 APNHGPCSICLSDYQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAP----TP 167
                 CSICL +Y   + LR +P+C+H FH  C+D WL+++ +CP+CRNSP P    TP
Sbjct: 132 EGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTP 191

[Close]

BLAST of Lcy01g013450 vs. ExPASy Swiss-Prot
Match: P0CH01 (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-23
Identity = 61/136 (44.85%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 18  GYGIAIAVSILVFISTI--MLVSYACIRVKSTRPRPRPSASQLPLPPSAAD-NVVVLMVG 77
           GY     V  ++ +S I  + +   CI V         S  Q  +  +A   N V++  G
Sbjct: 232 GYNTEPQVLKIILLSIIGPLTIFATCIAVGVCTSERFASLIQRNVAIAALQPNEVIVTTG 291

Query: 78  LDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPNDSLRCIPDCRHCFHSDCVDEW 137
           LD SIIESY K  LGESRRLP  N    C ICLS+Y   +++RCIP+C HCFHS+C+D W
Sbjct: 292 LDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVW 351

Query: 138 LRMSATCPLCRNSPAP 150
           L++  +CPLCRNSP+P
Sbjct: 352 LKIHGSCPLCRNSPSP 367

[Close]

BLAST of Lcy01g013450 vs. ExPASy TrEMBL
Match: A0A6J1K4J2 (putative RING-H2 finger protein ATL69 OS=Cucurbita maxima OX=3661 GN=LOC111492227 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.9e-78
Identity = 158/179 (88.27%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MSSADPPS----------AASP--AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTR 60
           MSSADPPS          AASP  AGVGLGYGIAIAVSILVFISTIMLVSYACIR KSTR
Sbjct: 1   MSSADPPSSSSSSSSSSAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60

Query: 61  PRPRPSASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD 120
           PRPRP  S  PLPP AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD
Sbjct: 61  PRPRPRPS-APLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD 120

Query: 121 YQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           YQP DS+RCIPDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 YQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

[Close]

BLAST of Lcy01g013450 vs. ExPASy TrEMBL
Match: A0A6J1HD62 (putative RING-H2 finger protein ATL69 OS=Cucurbita moschata OX=3662 GN=LOC111462423 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.5e-76
Identity = 156/181 (86.19%), Postives = 157/181 (86.74%), Query Frame = 0


Query: 1   MSSADPPS-----------AASP--AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKST 60
           MSSAD PS           AASP  AGVGLGYGIAIAVSILVFISTIMLVSYACIR KST
Sbjct: 1   MSSADSPSSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 60

Query: 61  RPRPRP-SASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL 120
           RPRPRP      PLPP AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL
Sbjct: 61  RPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL 120

Query: 121 SDYQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA 168
           SDYQP DS+RCIPDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA
Sbjct: 121 SDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA 180

[Close]

BLAST of Lcy01g013450 vs. ExPASy TrEMBL
Match: A0A1S3BCM0 (putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.6e-75
Identity = 150/170 (88.24%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 1   MSSADPPSAASPA-GVGLGYGIAIAVSILVFISTIMLVSYACIRVK-STRPRPRPSASQL 60
           MSSA PPS  SPA GVGLGYGIAIAVSILVFIST+ML+SYACIRVK STRPRPRPSA+ L
Sbjct: 1   MSSAHPPS--SPATGVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPSANSL 60

Query: 61  PLPPSA-ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRC 120
           P PP+A  DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DS+RC
Sbjct: 61  PSPPAATVDNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRC 120

Query: 121 IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 121 IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]

BLAST of Lcy01g013450 vs. ExPASy TrEMBL
Match: A0A5A7V8V8 (Putative RING-H2 finger protein ATL69 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00990 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 148/170 (87.06%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MSSADPPSAASPA-GVGLGYGIAIAVSILVFISTIMLVSYACIRVK-STRPRPRPSASQL 60
           MSSA PPS  SPA GVGLGYGIAIAVSILVFIST+ML+SYACIRVK STRPRPRP+A+ L
Sbjct: 1   MSSAHPPS--SPATGVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPNANSL 60

Query: 61  PLPPSA-ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRC 120
           P PP+A  DNVVVLMVGLDGSI ESYPKLVLGESRRLP PN+GPCSICLSDY+P+DS+RC
Sbjct: 61  PSPPAATVDNVVVLMVGLDGSIFESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRC 120

Query: 121 IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 121 IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]

BLAST of Lcy01g013450 vs. ExPASy TrEMBL
Match: A0A0A0KFY2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.6e-69
Identity = 137/168 (81.55%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MSSADPPSAASPA-GVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLP 60
           MSSA PPS  SPA G+GLGYGIAIAVSILVFIST+ML+SYACIRVKS   RP   ++ LP
Sbjct: 1   MSSAHPPS--SPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRP---SASLP 60

Query: 61  LPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRCIP 120
            PP+  DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DS+RCIP
Sbjct: 61  SPPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIP 120

Query: 121 DCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           DCRHCFHSDCVD+WLRMSATCPLCRNSPAPTP+ATPLSE  PLAS+AR
Sbjct: 121 DCRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]

BLAST of Lcy01g013450 vs. NCBI nr
Match: XP_023546361.1 (putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 159/177 (89.83%), Postives = 160/177 (90.40%), Query Frame = 0


Query: 1   MSSADPPS--------AASP--AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPR 60
           MSSADPPS        AASP  AGVGLGYGIAIAVSILVFISTIMLVSYACIR KSTRPR
Sbjct: 1   MSSADPPSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPR 60

Query: 61  PRPSASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQ 120
           PRPSA   PLPP AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQ
Sbjct: 61  PRPSA---PLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQ 120

Query: 121 PNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           P DS+RCIPDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 PYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 174

[Close]

BLAST of Lcy01g013450 vs. NCBI nr
Match: XP_022997272.1 (putative RING-H2 finger protein ATL69 [Cucurbita maxima])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 158/179 (88.27%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MSSADPPS----------AASP--AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTR 60
           MSSADPPS          AASP  AGVGLGYGIAIAVSILVFISTIMLVSYACIR KSTR
Sbjct: 1   MSSADPPSSSSSSSSSSAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60

Query: 61  PRPRPSASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD 120
           PRPRP  S  PLPP AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD
Sbjct: 61  PRPRPRPS-APLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD 120

Query: 121 YQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           YQP DS+RCIPDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 YQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

[Close]

BLAST of Lcy01g013450 vs. NCBI nr
Match: KAG6598654.1 (putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 158/179 (88.27%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MSSADPPS----------AASP--AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTR 60
           MSSADPPS          AASP  AGVGLGYGIAIAVSILVFISTIMLVSYACIR KSTR
Sbjct: 1   MSSADPPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60

Query: 61  PRPRPSASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD 120
           PRPRP  S  PLPP AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD
Sbjct: 61  PRPRPRPS-APLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSD 120

Query: 121 YQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           YQP DS+RCIPDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 YQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

[Close]

BLAST of Lcy01g013450 vs. NCBI nr
Match: KAG7029595.1 (putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.0 bits (754), Expect = 3.9e-76
Identity = 156/180 (86.67%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MSSADPPS----------AASP--AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTR 60
           MSSAD PS          AASP  AGVGLGYGIAIAVSILVFISTIMLVSYACIR KSTR
Sbjct: 1   MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTR 60

Query: 61  PRPRP-SASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120
           PRPRP      PLPP AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS
Sbjct: 61  PRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLS 120

Query: 121 DYQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           DYQP DS+RCIPDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 121 DYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 180

[Close]

BLAST of Lcy01g013450 vs. NCBI nr
Match: XP_022961745.1 (putative RING-H2 finger protein ATL69 [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 5.1e-76
Identity = 156/181 (86.19%), Postives = 157/181 (86.74%), Query Frame = 0


Query: 1   MSSADPPS-----------AASP--AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKST 60
           MSSAD PS           AASP  AGVGLGYGIAIAVSILVFISTIMLVSYACIR KST
Sbjct: 1   MSSADSPSSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKST 60

Query: 61  RPRPRP-SASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL 120
           RPRPRP      PLPP AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL
Sbjct: 61  RPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICL 120

Query: 121 SDYQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA 168
           SDYQP DS+RCIPDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA
Sbjct: 121 SDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNA 180

[Close]

BLAST of Lcy01g013450 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-52
Identity = 105/167 (62.87%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 1   MSSADPPSAASPAGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPL 60
           MS   PP+    +GVGLGYGIAIAVSILV IS IML SY CIR KST      S   L L
Sbjct: 1   MSPISPPA----SGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDL 60

Query: 61  PPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRCIPD 120
           P  AA+    + +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + +RCIP+
Sbjct: 61  PSPAAE----VKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPE 120

Query: 121 CRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 168
           C HCFH+DCVDEWLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 121 CNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of Lcy01g013450 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 3.9e-29
Identity = 59/133 (44.36%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 15  VGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPLPPSAADNVVVLMVG 74
           + +G GI  A+ +      +     +CI+ +   P P  + +Q     S+     V+++G
Sbjct: 248 IAVGAGIPGALIVFGLFCFVYSKISSCIKRRRLVPTPEINNAQAHYLHSS-----VIVMG 307

Query: 75  LDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRCIPDCRHCFHSDCVDEWL 134
           LDG  IESYPK+VLGES+RLP  +   C+ICLS+Y+P ++LR IP C+HCFH+DC+DEWL
Sbjct: 308 LDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADCIDEWL 367

Query: 135 RMSATCPLCRNSP 148
           +++ TCP+CRNSP
Sbjct: 368 KLNGTCPVCRNSP 375

[Close]

BLAST of Lcy01g013450 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-28
Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 16  GLGYGIAIAVSILVFISTIMLVSYACIR-------VKSTRPRPRPSASQLPLPP------ 75
           GL YGI +++ IL+ I+TI L SY C R         + R R R   S   LPP      
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 76  ---SAADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYQPNDS 135
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DY+  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 136 LRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 164
           +R +PDC H FH +CVD WLR+  TCP+CR SP P+P  TP+++  P +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Lcy01g013450 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 61/155 (39.35%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 16  GLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPLPPSAADNVVVLMVGL 75
           G  YGI +++ +L+ I+TI L SY C R + +    + +     +       ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 76  DGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPNDSLRCIPDCRHCFHSDCV 135
           D   I+SYPK++  E++       GP     C+ICL DY+    LR +PDC H FH  C+
Sbjct: 123 DEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 182

Query: 136 DEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 166
           D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 183 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]

BLAST of Lcy01g013450 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-25
Identity = 76/195 (38.97%), Postives = 101/195 (51.79%), Query Frame = 0


Query: 6   PPSAASP---AGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPLPP 65
           PP    P     +GLGY IAIA+  LV ISTI+L SY C R  ++R R   SA+      
Sbjct: 12  PPPVPIPTYITSLGLGYSIAIALGFLVLISTIILSSYICCR--ASRLRFSASAANANANA 71

Query: 66  SAADNVV------------------VLMVGLDGSIIESYPK---------LVLGESRRLP 125
           S +D  V                  V++ GLD S+I SYPK         +V G+     
Sbjct: 72  SFSDRGVIVPRIIFVAEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDG 131

Query: 126 APNHGPCSICLSDYQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAP----TP 167
                 CSICL +Y   + LR +P+C+H FH  C+D WL+++ +CP+CRNSP P    TP
Sbjct: 132 EGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTP 191

The following BLAST results are available for this feature:

BLAST of Lcy01g013450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL42	4.6e-51	62.87	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9FG21	3.5e-27	39.64	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
Q8RX29	1.7e-26	39.35	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9M313	6.2e-24	38.97	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]
P0CH01	1.4e-23	44.85	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]

BLAST of Lcy01g013450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4J2	5.9e-78	88.27	putative RING-H2 finger protein ATL69 OS=Cucurbita maxima OX=3661 GN=LOC11149222...	[more]
A0A6J1HD62	2.5e-76	86.19	putative RING-H2 finger protein ATL69 OS=Cucurbita moschata OX=3662 GN=LOC111462...	[more]
A0A1S3BCM0	3.6e-75	88.24	putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE...	[more]
A0A5A7V8V8	2.3e-74	87.06	Putative RING-H2 finger protein ATL69 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0KFY2	8.6e-69	81.55	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 P...	[more]

BLAST of Lcy01g013450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546361.1	1.9e-78	89.83	putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo]	[more]
XP_022997272.1	1.2e-77	88.27	putative RING-H2 finger protein ATL69 [Cucurbita maxima]	[more]
KAG6598654.1	1.2e-77	88.27	putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7029595.1	3.9e-76	86.67	putative RING-H2 finger protein ATL69, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022961745.1	5.1e-76	86.19	putative RING-H2 finger protein ATL69 [Cucurbita moschata]	[more]

BLAST of Lcy01g013450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07040.1	3.2e-52	62.87	RING/U-box superfamily protein	[more]
AT5G53110.1	3.9e-29	44.36	RING/U-box superfamily protein	[more]
AT5G06490.1	2.5e-28	39.64	RING/U-box superfamily protein	[more]
AT2G35910.1	1.2e-27	39.35	RING/U-box superfamily protein	[more]
AT3G61550.1	4.4e-25	38.97	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..143 e-value: 5.1E-5 score: 32.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 102..144 e-value: 1.7E-12 score: 47.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 102..144 score: 12.430266
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 68..149 e-value: 8.4E-20 score: 72.2
None	No IPR available	PANTHER	PTHR46279:SF19	RING-H2 FINGER PROTEIN ATL69-RELATED	coord: 18..149
None	No IPR available	PANTHER	PTHR46279	RING/U-BOX SUPERFAMILY PROTEIN	coord: 18..149
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 102..144 e-value: 3.81324E-16 score: 66.1713
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 101..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g013450.1	Lcy01g013450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane