Lcy01g011940 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g011940
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr01: 32702672 .. 32703772 (+)
RNA-Seq ExpressionLcy01g011940
SyntenyLcy01g011940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCTGAAAGGTATGATGAGAAGTATCAGTTGGTACTGAAATGGTTGTTTGATGAAGCGTAATATTCCTTTATTCTTTGGCCATCTTAAATGGAGAGAGCATAACTGCAGAATGAAATTCTTTTAAGTGATAACATAATCGGTGCTTGAATTTAGAAAACACAGTGGGAATACAATTTATACATTTTCATGCATCTCTGTTTCTTGTAAAGATACTACTATTGATGAAGAAAGCACGAGGGGAATCAGCTAAATACATACATACATATATATATATATATATATTTTTCCATGTGTGATGAAAGGAGATGTTAGGTCTAAGTTGTTTGTTTAGAATCTTGTGGTAGAATCAATCTTTCTGTCGAAAAGAGTGAAGAAGCTTGGTATGGAGGAACGATGATGAATTTATTCCAGTGTCTGGAAGGGTATAATCTTTATTGGTGTCAAATTTCTGTCTTGTCAACTTCCGCAGATCATTTTCGAAAAACTTGTATTGGCATTTATTATAATCTGTTTGCCAAGATGCCAAGAAAAATTCTGTATGATCTCCATTGTAACAACTTGGTATGGATTAATTTGGTTTCTGATTGATGAGGAAGGGTACAAGTGCATGAGCATCATGAACATGTGATACTTTTAGCTGCATGTCAACTTCTTTTGCTTCAATCCTGTTTGGGATCTGGAATTTGATGGACCCACCCCCCCAATTTTGCTTCTCCGAACTGCAAAAAATTTCAATCTGTTGTGTACTTACCGACCTGGGTTTTCTTTTTCATTTATGATTTTTATTGTCTTTTTTTTTTTTTTAATTTTTATCTTCTGTATTGCCTTGCCCCCACTTAAAATTGATTTGTTTTTGTCCAGAGGGTTCTGTTGTTTGATACTTACCTTTCACCTACATCAACTGATAGAGCCAAAGACACATGGGATCTGACATGGGGTTGTGTTATGAGTTTCAGAGAAGTAATATCTTATACAGAGGAAACAAAGGAAAAACTGGTCCTTGTGCAGCTGCTGCTCAGAAGGGAGGATAAACAATCCAAAGTTGCTGCCTGTGGGTGGGTGGCTTATGATGGTAGGGCTCTGTGCCTCAGCTAA

mRNA sequence

ATGCTTCCTGAAAGGTATGATGAGAAGTATCAGTTGAGGGTTCTGTTGTTTGATACTTACCTTTCACCTACATCAACTGATAGAGCCAAAGACACATGGGATCTGACATGGGGTTGTGTTATGAGTTTCAGAGAAGTAATATCTTATACAGAGGAAACAAAGGAAAAACTGGTCCTTGTGCAGCTGCTGCTCAGAAGGGAGGATAAACAATCCAAAGTTGCTGCCTGTGGGTGGGTGGCTTATGATGGTAGGGCTCTGTGCCTCAGCTAA

Coding sequence (CDS)

ATGCTTCCTGAAAGGTATGATGAGAAGTATCAGTTGAGGGTTCTGTTGTTTGATACTTACCTTTCACCTACATCAACTGATAGAGCCAAAGACACATGGGATCTGACATGGGGTTGTGTTATGAGTTTCAGAGAAGTAATATCTTATACAGAGGAAACAAAGGAAAAACTGGTCCTTGTGCAGCTGCTGCTCAGAAGGGAGGATAAACAATCCAAAGTTGCTGCCTGTGGGTGGGTGGCTTATGATGGTAGGGCTCTGTGCCTCAGCTAA

Protein sequence

MLPERYDEKYQLRVLLFDTYLSPTSTDRAKDTWDLTWGCVMSFREVISYTEETKEKLVLVQLLLRREDKQSKVAACGWVAYDGRALCLS
Homology
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BLAST of Lcy01g011940 vs. NCBI nr
Match: KAG6598753.1 (hypothetical protein SDJN03_08531, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15
Identity = 52/80 (65.00%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 10  YQLRVLLFDTYLSPTSTDRAKDTWDLTWGCVMSFREVISYTEETKEKLVLVQLLLRREDK 69
           YQ RVLL DTYLSP STDRAKDTWDLT  CVMSFR+VISY   TKEKLVLVQ  L     
Sbjct: 104 YQRRVLLLDTYLSPISTDRAKDTWDLTLDCVMSFRDVISY---TKEKLVLVQQQLLLLLL 163

Query: 70  QSKVAACGWVAYDGRALCLS 90
              +   GW+  D R LCLS
Sbjct: 164 LLLLLLRGWLGDDDRVLCLS 180

The following BLAST results are available for this feature:
BLAST of Lcy01g011940 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g011940 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g011940 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598753.12.7e-1565.00hypothetical protein SDJN03_08531, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy01g011940 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g011940.1Lcy01g011940.1mRNA