Lcy01g011870 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g011870
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Epidermal patterning factor-like protein
Location	Chr01: 32596727 .. 32597245 (+)
RNA-Seq Expression	Lcy01g011870
Synteny	Lcy01g011870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCCTTCAAATTTGGCACAGAAACAAACACCTTTCAATTTCCTTGCTCTTCTTCTTCCTCCTCTCTGTTTCCATCTTCATTCATGTCACATCCATAGCTGAAGGTAATTAAGCTCTGTCTCTAATTTCCCACCTCAATTTTTGCCCCTTTTGTAAAGATTTCTCCTTGAGTATAGTTTCATGGTTTTGGAATGATGCAGGCAGAGGTATTCCGACGCCATTGATGGAGGAGGGAGAAAGGAGGTCGCCGGAGCTGGCGGAGGAGGTGGGGATGGTGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGTGGTGGGCGTTGTGAGGCAGTTCAAGTACCAGTGGCGCTGCATGATTCATCACATCAGAATCAAAGGAAAAGAAGAAGCAGCCATTTCTCTGCTGCTGTGGCTCTGTCTAGTGAAGATGAGACCTCAAATTACAAGCCAATAAGCTGGAAATGTAAATGTGGGAACTTTATTTTCAACCCATGA

mRNA sequence

ATGGGCAGCCTTCAAATTTGGCACAGAAACAAACACCTTTCAATTTCCTTGCTCTTCTTCTTCCTCCTCTCTGTTTCCATCTTCATTCATGTCACATCCATAGCTGAAGGCAGAGGTATTCCGACGCCATTGATGGAGGAGGGAGAAAGGAGGTCGCCGGAGCTGGCGGAGGAGGTGGGGATGGTGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGTGGTGGGCGTTGTGAGGCAGTTCAAGTACCAGTGGCGCTGCATGATTCATCACATCAGAATCAAAGGAAAAGAAGAAGCAGCCATTTCTCTGCTGCTGTGGCTCTGTCTAGTGAAGATGAGACCTCAAATTACAAGCCAATAAGCTGGAAATGTAAATGTGGGAACTTTATTTTCAACCCATGA

Coding sequence (CDS)

ATGGGCAGCCTTCAAATTTGGCACAGAAACAAACACCTTTCAATTTCCTTGCTCTTCTTCTTCCTCCTCTCTGTTTCCATCTTCATTCATGTCACATCCATAGCTGAAGGCAGAGGTATTCCGACGCCATTGATGGAGGAGGGAGAAAGGAGGTCGCCGGAGCTGGCGGAGGAGGTGGGGATGGTGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGTGGTGGGCGTTGTGAGGCAGTTCAAGTACCAGTGGCGCTGCATGATTCATCACATCAGAATCAAAGGAAAAGAAGAAGCAGCCATTTCTCTGCTGCTGTGGCTCTGTCTAGTGAAGATGAGACCTCAAATTACAAGCCAATAAGCTGGAAATGTAAATGTGGGAACTTTATTTTCAACCCATGA

Protein sequence

MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERRSPELAEEVGMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFSAAVALSSEDETSNYKPISWKCKCGNFIFNP

Homology

[Close]

BLAST of Lcy01g011870 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 55/138 (39.86%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 6   IWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERRSPELAEEVGMVRSQ 65
           +W  N  +S  LL   +L+ +   H + +A GR  P P   E  +   +  +   M+R  
Sbjct: 2   VWSSN--MSSFLLILLILNST---HFSLMANGR--PEPDSVEFTKSGDQ--DVKMMMRGL 61

Query: 66  IGSRPPSCRR-RCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFSAAVAL--SSEDETS 125
           IGSRPP C R RCR C G CEA+QVP       H +     SS  S  + L  +  D+++
Sbjct: 62  IGSRPPRCERVRCRSC-GHCEAIQVPTNPQTKLH-SPLTTSSSSSSETIHLDYTRGDDST 121

Query: 126 NYKPISWKCKCGNFIFNP 141
           NYKP+SWKCKCGN I+NP
Sbjct: 122 NYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Lcy01g011870 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 30/91 (32.97%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 53  PELAEEVGMV--RSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFS 112
           P ++ +V ++  ++++GS PPSC  RC  C   C A+QVP     S              
Sbjct: 33  PPISPQVALIEDKARLGSTPPSCHNRCNNC-HPCMAIQVPTLPTRSRFTRVNPFSGGFVR 92

Query: 113 AAVALSSE-DETSNYKPISWKCKCGNFIFNP 141
              +L++  D+ SNYKP+ WKC C    +NP
Sbjct: 93  PPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Lcy01g011870 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-04
Identity = 36/118 (30.51%), Postives = 51/118 (43.22%), Query Frame = 0


Query: 19  FFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERR---SPELAEEVGMVRSQIGSRPPSCRR 78
           FFF+  + I+I    I +    P    E   RR     E  EE+   R +IGS+PPSC +
Sbjct: 11  FFFVFPIIIYIGPAEIIK----PQAAEENSRRRILNPNENKEEIVKRRRRIGSKPPSCEK 70

Query: 79  RCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFSAAVALSSEDETSNYKPISWKCKC 134
           +C  C   CEA+Q P         +     S H+            +NY+P  W+C C
Sbjct: 71  KCYGC-EPCEAIQFPTI-------SSIPHLSPHY------------ANYQPEGWRCHC 104

[Close]

BLAST of Lcy01g011870 vs. ExPASy TrEMBL
Match: A0A6J1BQW9 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111004910 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.6e-52
Identity = 116/156 (74.36%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MGSLQIWHRNK-HLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLME----EGERRSPEL 60
           MGSLQ WHRNK H+SISLL   LLSVSIF+ V S+AEGRGIPTPLME    E     PEL
Sbjct: 1   MGSLQNWHRNKQHISISLL---LLSVSIFVDVISMAEGRGIPTPLMEGRKVEAAGSWPEL 60

Query: 61  AEEVGMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFSAA--- 120
            E+VGM+RSQIGSRPPSCRRRCRECGG CEA+QVPVALHD S QNQRK+RSSHF AA   
Sbjct: 61  PEKVGMIRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHD-SQQNQRKKRSSHFPAAAAT 120

Query: 121 --------VALSSEDETSNYKPISWKCKCGNFIFNP 141
                   +ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SAGASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]

BLAST of Lcy01g011870 vs. ExPASy TrEMBL
Match: A0A6J1KP85 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496352 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 110/154 (71.43%), Postives = 119/154 (77.27%), Query Frame = 0


Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGE-RRSPELAEEV 60
           MGSLQIWHRNKHLSI  LFF  LSV +FIH+TSIAEGRG  TPLME+ +    P  AE V
Sbjct: 1   MGSLQIWHRNKHLSIPFLFF--LSVFLFIHLTSIAEGRGFQTPLMEDRKVEEQPSTAELV 60

Query: 61  GMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRR----SSHFSA---- 120
            M RSQIGS+PPSCRRRCRECGG CEAVQVPVA+HDSSH+ QR+R      SHFS+    
Sbjct: 61  RMRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAVHDSSHEKQRRRTRRRIRSHFSSEASS 120

Query: 121 -----AVALSSEDETSNYKPISWKCKCGNFIFNP 141
                 VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]

BLAST of Lcy01g011870 vs. ExPASy TrEMBL
Match: A0A6J1GIN2 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111454528 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.1e-48
Identity = 109/158 (68.99%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGE-RRSPELAEEV 60
           MGSLQIWHRNKHLSI  LFF  LSV +FIH+TSIAEGRG  TPLME+ +    P  AE V
Sbjct: 1   MGSLQIWHRNKHLSIPFLFF--LSVFLFIHLTSIAEGRGFQTPLMEDRKVEEQPSTAELV 60

Query: 61  GM-VRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRR----SSHFSA--- 120
            M  RSQIGS+PPSCRRRCRECGG CEA+QVPVA+HDS+HQ QR+R      SHFS+   
Sbjct: 61  RMRRRSQIGSQPPSCRRRCRECGGPCEAIQVPVAVHDSTHQKQRRRTRRRIRSHFSSEAS 120

Query: 121 ---------AVALSSEDETSNYKPISWKCKCGNFIFNP 141
                     VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSSSSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 156

[Close]

BLAST of Lcy01g011870 vs. ExPASy TrEMBL
Match: A0A0A0LPQ0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G372820 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.3e-41
Identity = 107/155 (69.03%), Postives = 119/155 (76.77%), Query Frame = 0


Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERRSPELA---- 60
           MGS QIWHRN++  IS+L  F LSV I I VTSI EGRGI      EGER+S E+A    
Sbjct: 1   MGSFQIWHRNRNKHISILLLF-LSVFILILVTSI-EGRGIQA---MEGERKSAEVATEEE 60

Query: 61  EEVG-MVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQ----RKRRSS--HF 120
           E++G M+R+QIGSRPPSCRR+CRECGG CEAVQVPVALHD S+QNQ    RKRRSS  +F
Sbjct: 61  EKMGMMMRNQIGSRPPSCRRKCRECGGHCEAVQVPVALHD-SNQNQRKGRRKRRSSSRYF 120

Query: 121 SA----AVALSSEDETSNYKPISWKCKCGNFIFNP 141
           S      VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SVNSKHDVALSSEDETSNYKPISWKCKCGNFIFNP 149

[Close]

BLAST of Lcy01g011870 vs. ExPASy TrEMBL
Match: A0A1S3BBM2 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103488159 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.8e-39
Identity = 100/159 (62.89%), Postives = 112/159 (70.44%), Query Frame = 0


Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERRSPELA---- 60
           MGS QIWHRN++  +S+L  F LSV I I VTSI EGRGI      EGER+S E      
Sbjct: 1   MGSFQIWHRNRNKHVSILLLF-LSVFILILVTSI-EGRGIQA---MEGERKSAETVAVAT 60

Query: 61  ----EEVG-MVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRR------ 120
               E++G M+R+QIGSRPPSCRR+C ECGG CEAVQVPVALHD S+QNQ+K R      
Sbjct: 61  EEEEEKMGMMMRNQIGSRPPSCRRKCMECGGHCEAVQVPVALHD-SNQNQKKGRRRRRSS 120

Query: 121 ----SSHFSAAVALSSEDETSNYKPISWKCKCGNFIFNP 141
               S H    VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 RRYFSDHSKHDVALSSEDETSNYKPISWKCKCGNFIFNP 153

[Close]

BLAST of Lcy01g011870 vs. NCBI nr
Match: XP_022131875.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022131876.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia])

HSP 1 Score: 214.2 bits (544), Expect = 7.4e-52
Identity = 116/156 (74.36%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MGSLQIWHRNK-HLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLME----EGERRSPEL 60
           MGSLQ WHRNK H+SISLL   LLSVSIF+ V S+AEGRGIPTPLME    E     PEL
Sbjct: 1   MGSLQNWHRNKQHISISLL---LLSVSIFVDVISMAEGRGIPTPLMEGRKVEAAGSWPEL 60

Query: 61  AEEVGMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFSAA--- 120
            E+VGM+RSQIGSRPPSCRRRCRECGG CEA+QVPVALHD S QNQRK+RSSHF AA   
Sbjct: 61  PEKVGMIRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHD-SQQNQRKKRSSHFPAAAAT 120

Query: 121 --------VALSSEDETSNYKPISWKCKCGNFIFNP 141
                   +ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SAGASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]

BLAST of Lcy01g011870 vs. NCBI nr
Match: XP_023002540.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 9.1e-50
Identity = 110/154 (71.43%), Postives = 119/154 (77.27%), Query Frame = 0


Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGE-RRSPELAEEV 60
           MGSLQIWHRNKHLSI  LFF  LSV +FIH+TSIAEGRG  TPLME+ +    P  AE V
Sbjct: 1   MGSLQIWHRNKHLSIPFLFF--LSVFLFIHLTSIAEGRGFQTPLMEDRKVEEQPSTAELV 60

Query: 61  GMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRR----SSHFSA---- 120
            M RSQIGS+PPSCRRRCRECGG CEAVQVPVA+HDSSH+ QR+R      SHFS+    
Sbjct: 61  RMRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAVHDSSHEKQRRRTRRRIRSHFSSEASS 120

Query: 121 -----AVALSSEDETSNYKPISWKCKCGNFIFNP 141
                 VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]

BLAST of Lcy01g011870 vs. NCBI nr
Match: XP_023538508.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 109/160 (68.12%), Postives = 119/160 (74.38%), Query Frame = 0


Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGE-RRSPELAEEV 60
           MGSLQIWHRNKHLSI  LFF  LSV +FIH+TS+AEGRG  TPLME+ +    P  AE V
Sbjct: 1   MGSLQIWHRNKHLSIPFLFF--LSVFLFIHLTSMAEGRGFQTPLMEDRKVEEQPSTAELV 60

Query: 61  GMVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRR-----SSHFSA--- 120
            M RSQIGS+PPSCRRRCRECGG CEAVQVPVA+HDS+HQ QR+R       SHFS+   
Sbjct: 61  RMRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAVHDSTHQKQRRRTRRRRIRSHFSSEAS 120

Query: 121 -----------AVALSSEDETSNYKPISWKCKCGNFIFNP 141
                       VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSSSSSSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 158

[Close]

BLAST of Lcy01g011870 vs. NCBI nr
Match: XP_022951797.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 6.5e-48
Identity = 109/158 (68.99%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGE-RRSPELAEEV 60
           MGSLQIWHRNKHLSI  LFF  LSV +FIH+TSIAEGRG  TPLME+ +    P  AE V
Sbjct: 1   MGSLQIWHRNKHLSIPFLFF--LSVFLFIHLTSIAEGRGFQTPLMEDRKVEEQPSTAELV 60

Query: 61  GM-VRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRR----SSHFSA--- 120
            M  RSQIGS+PPSCRRRCRECGG CEA+QVPVA+HDS+HQ QR+R      SHFS+   
Sbjct: 61  RMRRRSQIGSQPPSCRRRCRECGGPCEAIQVPVAVHDSTHQKQRRRTRRRIRSHFSSEAS 120

Query: 121 ---------AVALSSEDETSNYKPISWKCKCGNFIFNP 141
                     VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSSSSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 156

[Close]

BLAST of Lcy01g011870 vs. NCBI nr
Match: XP_038886514.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 112/151 (74.17%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 1   MGSLQIWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERRSPELA---E 60
           MGS Q WHR KH+SISLLF   LSVSI IHVTSI EGRGI   L   G   SPE A   E
Sbjct: 1   MGSFQNWHRIKHVSISLLF---LSVSILIHVTSIVEGRGIQGSL-TTGRSESPETAAAEE 60

Query: 61  EVG-MVRSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKR---RSSHFSA-- 120
           + G M+R+QIGSRPPSCRRRCRECGG CEAVQVPVALHD SHQNQRK+   RSSHFS   
Sbjct: 61  KAGMMMRNQIGSRPPSCRRRCRECGGHCEAVQVPVALHDLSHQNQRKKRTSRSSHFSVNS 120

Query: 121 --AVALSSEDETSNYKPISWKCKCGNFIFNP 141
              VALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 KHDVALSSEDETSNYKPISWKCKCGNFIFNP 147

[Close]

BLAST of Lcy01g011870 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 7.7e-15
Identity = 55/138 (39.86%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 6   IWHRNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERRSPELAEEVGMVRSQ 65
           +W  N  +S  LL   +L+ +   H + +A GR  P P   E  +   +  +   M+R  
Sbjct: 2   VWSSN--MSSFLLILLILNST---HFSLMANGR--PEPDSVEFTKSGDQ--DVKMMMRGL 61

Query: 66  IGSRPPSCRR-RCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFSAAVAL--SSEDETS 125
           IGSRPP C R RCR C G CEA+QVP       H +     SS  S  + L  +  D+++
Sbjct: 62  IGSRPPRCERVRCRSC-GHCEAIQVPTNPQTKLH-SPLTTSSSSSSETIHLDYTRGDDST 121

Query: 126 NYKPISWKCKCGNFIFNP 141
           NYKP+SWKCKCGN I+NP
Sbjct: 122 NYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Lcy01g011870 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 30/91 (32.97%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 53  PELAEEVGMV--RSQIGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFS 112
           P ++ +V ++  ++++GS PPSC  RC  C   C A+QVP     S              
Sbjct: 33  PPISPQVALIEDKARLGSTPPSCHNRCNNC-HPCMAIQVPTLPTRSRFTRVNPFSGGFVR 92

Query: 113 AAVALSSE-DETSNYKPISWKCKCGNFIFNP 141
              +L++  D+ SNYKP+ WKC C    +NP
Sbjct: 93  PPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Lcy01g011870 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 36/118 (30.51%), Postives = 51/118 (43.22%), Query Frame = 0


Query: 19  FFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERR---SPELAEEVGMVRSQIGSRPPSCRR 78
           FFF+  + I+I    I +    P    E   RR     E  EE+   R +IGS+PPSC +
Sbjct: 11  FFFVFPIIIYIGPAEIIK----PQAAEENSRRRILNPNENKEEIVKRRRRIGSKPPSCEK 70

Query: 79  RCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFSAAVALSSEDETSNYKPISWKCKC 134
           +C  C   CEA+Q P         +     S H+            +NY+P  W+C C
Sbjct: 71  KCYGC-EPCEAIQFPTI-------SSIPHLSPHY------------ANYQPEGWRCHC 104

[Close]

BLAST of Lcy01g011870 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 40/137 (29.20%), Postives = 60/137 (43.80%), Query Frame = 0


Query: 9   RNKHLSISLLFFFLLSVSIFIHVTSIAEGRGIPTPLMEEGERRSPELAEEVGMVRSQ--- 68
           R + L  +L+ F LL +     + S A+GR I       G+R   +L    G +RS    
Sbjct: 7   RRRFLLAALVTFALLHLFSASSIVS-ADGRWI-------GQRTGSDLPG--GFIRSNKRF 66

Query: 69  --IGSRPPSCRRRCRECGGRCEAVQVPVALHDSSHQNQRKRRSSHFSAAVALSSEDETSN 128
              GS PP+CR +C +C   C+ V VP+                     +++  E     
Sbjct: 67  GGPGSSPPTCRSKCGKC-QPCKPVHVPI------------------QPGLSMPLE----- 109

Query: 129 YKPISWKCKCGNFIFNP 141
           Y P +W+CKCGN +F P
Sbjct: 127 YYPEAWRCKCGNKLFMP 109

The following BLAST results are available for this feature:

BLAST of Lcy01g011870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T068	1.1e-13	39.86	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	1.5e-07	32.97	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
C4B8C4	1.6e-04	30.51	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Lcy01g011870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQW9	3.6e-52	74.36	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1KP85	4.4e-50	71.43	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GIN2	3.1e-48	68.99	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0LPQ0	8.3e-41	69.03	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G372...	[more]
A0A1S3BBM2	7.8e-39	62.89	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103488159...	[more]

BLAST of Lcy01g011870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131875.1	7.4e-52	74.36	EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022131876.1...	[more]
XP_023002540.1	9.1e-50	71.43	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima]	[more]
XP_023538508.1	1.0e-48	68.13	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022951797.1	6.5e-48	68.99	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata]	[more]
XP_038886514.1	1.4e-47	74.17	EPIDERMAL PATTERNING FACTOR-like protein 2 [Benincasa hispida]	[more]

BLAST of Lcy01g011870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37810.1	7.7e-15	39.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G10310.1	1.1e-08	32.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13898.1	1.1e-05	30.51	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT4G14723.1	1.6e-04	29.20	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 65..140 e-value: 1.6E-17 score: 63.2
None	No IPR available	PANTHER	PTHR33109:SF54	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2	coord: 6..140
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 6..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g011870.1	Lcy01g011870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane