Lcy01g009610 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g009610
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein ROOT PRIMORDIUM DEFECTIVE 1
LocationChr01: 28158953 .. 28163301 (+)
RNA-Seq ExpressionLcy01g009610
SyntenyLcy01g009610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGGTTGCCTCACTCCATCATCTATCTGTCGCATCCCATCGTCCCAAGGGTTTGCACCAAATTTAAACTCTTACACTTAGATCTTCTCTTCTTCCTTCAGATTTGTGCTTTCTTCTTGCTCTACTGCACGCATTTCACTTTCCGAATTCATGTTTTTGCTCTCATTGAACCAATGATTTCATTTCAATGCGTAATTGTTTCAACATTTTTTTGCTCGATTATTTAGCGATGTACGATTGTTTGTTGTGTGCCACTTGCATTCCTTGCCTAGATCTACTTGGTTTTTTTTTTTCTTTTACTGTCGGAAGTATGGGATTGGAAGTGTTCTCTTTGTTTGATCGAGGTGTTCTGATGCTTGCCGGTCGAGATTTTCCTAGTTTTGTTCGTCTCGCCGTCCCCTACCTTTTGGTTGCTGCAGTTATCAGATCTTGGTTATGTATCGTTACTATAGGGTTTGTTTGGCATGTCTGATATTGTTAAATTGTGAGCATGCTTGTTTTTCTTGATGATGCCAAAGGGTATTAGTAATCGTGATCGTGTTGCAGTTTCCAATTTCTGATGTGTAGATTTTCTTTTAAACTGATGTGTACTTATGTTGTTGTCTATTATGTTGCTGTCCATTTCACGTTCAATTATGTTGCTGTCTTGTGATTCATCATCTGTCCTTGTATGCACAAATATTCTACTGTACATGCTTCGATGCATTGTAGGTGTTCTTAAATGTGATATTATCAATCCTTTGAATTCTACAGTCGATCTCATGCTTTTTGATCTTGTTCGTCGAGTTATAAGGTTGATTTATTTCTACTGGCTAGTGGGTATTTGATCTTTAGCAGTAAGGAACAATTCCCCTGTGAATTTGATGTGTTTGCAAATTACAGGTTATACTATTCATCAACTTGATCTCTCATGGCCCATCTAAGTAGAGTTGAATTGGCCACTATTTATTGACACTAAATTCAGTGGCCTTCTCTAAACCCTGCTCCTGCGAATCTGTATCAAACTCTACGCAAAAGCCCTAAACCCTAATAGCAGAAAAATCAATTGGGAAATATGATGATCTTCTTTGGTTATTACCCTAAATTCCTCAGCTCCAAATTTTCATCATTCAAAACTACGGCTTGGTTTCTCTGCAATTTCAATCCCTCAAGATCGATGACCTAATCCACCTCCATTCCCAAAAAGCTCCAAAGGGTCCGTGACCATGTTTACGATTACATGGAAGTTGAGAAAAAAACCCGAAAAGTCCTCAAGTTTCAGGACCTTATTCTCACCCAAATCAATCAAACCATCCCAGTTTCTCACCTCGATGTCTTATCTCGTCGCCTTGGCTTCAAGCAGCACGAAGCTGGGGCCTTCGTCCTTAAATTCCCTCATGTATTTGAAATCTACGAGCACCCTGTTCAACGGATCCTCTATTGCAGGTTAACCCGAAAAGCCCACCTCCAAATCTAGCAGCAAAAGCAGGCTGTGATTACCCAGATTCCAGATGCTGTGACTCGGCTGAGGAAGCTCTTGATGATGTCCAACAATGGCCGCCTTCGCCTTGAGCACATTCGGATTGCCCGGTCCGAATTCGGGTTACCTGATGATTTCGAGTACTCGATAATTCTCAAGTACCCTAAATTCTTTAGACTGTTTGATGCAAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGGGATCCAAACCTTACTGTTTGTGCAATAGAGAGAGCTAGGGAGAGAGTTTATAGAGAGAAAGGAAGTGATGCTGAGGATATTAGATTCTCTTTCATTGTGAATTTTCCTCCTGGCTTCAAGATAGGGAAGTATTACAGAATTGCAGAGTGGAAATGGCAGCGGCTTCCATATTGGTCGCCTTACGAGGATGTTTCTGAATACGATATGAGGTCCATTGAAGCTCAAAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCTTTGACTATGGAGAAAAAGATCACCTTGGAACGGATTGCGCATTTTCGATTAGCGATGAATCTGCCAAAGAAGTTGAAGGAGTTCCTTCTTCAGCACCAGGGGATTTTCTACATTTCAACCAGAGGAAACCATGGGAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATAGGAGGAGTGAGTTAATTGAGCCAAATGATGTATATTTGGCTAGAAGGAAGTTGGCTGAGTTGGTTTTGCTTAGTCCAAGGAAGGCAAAAATAGACAGGGAACTTGTTGGGTACAGGAGAGAAAGAGTGGGTTATGATATGGAAAGCTTTAGGACAGATTATGTGGAGGATAAATTTGAACATTTTGGTGCTGGGGACAAAGGCAATGTGAGAGATGTTTTGGACTCAGACATGGGTTCTGATGCTGAATCTGATTACTCTGATGACGATAATGATAATGATGATAGAACTTTCAAGGCAGAGGATGTGAATATAACCGAATAGCATAAACTCAATGGTCCCAACAGTCTTCTTGGAGCTGCTATTTATTTCCATCAGATTCAGATGTGAATGTGATGACGCGCCTCAAAACTCATTTGGTAACTGACTGACACAATACTGTGAAGAAGCATTGTGAATTATCCTTGTCGTGAGCAAAGGCAAGCGTTTTTCAGACATGAATTTTGTTTACCAGGAGCATAATGGCCATGATATTCATTTAGGCATTTGTTGTTCGATTGGGGTTGTAGATCTTTTTGGTTGTGATATATGGTTTGGCATTGTGAAGGGGCATGGCTGAAAGAGGAGTGGCACCATATTTAAAGTTGAAGATGCCACAAGCACGGAATCCAAATTCTGAAGGAGAATAAGAATTGGGTAAAATGCAGATGAATCCCTCCCACTTTGATGGCCAGAATCTGCAAAAATACAGCATGCAAAGTCCTTGTAGTTTCATGATTAGCTCCAAGCTGCGAAGAATATGTCAAGGAAAAAGAGAGCTTCTGGAAGATTTTTATTTCAGGTGGCATTTAGTTCACTTAAAAATTTTACATCGTTGAATGCATTCATTTTGAGGGACCTCTCTCTCTCTATTTCTCAATCAATGATTTAATAAAAAACTTTACATTGATGAATGCATTCATTTAGAGGGAGCCTCTCTCTCTCTCAAAGATAATTTTCGAAATGGTTAAAAACAGATCAAGAATATGTGGAAGAGGTTTATAAAACCTGCCTTATAAAGTAAATTTTAGTTTCTAAATTCTGTAAATTTAGTTTTCAAGTATAATAATTGGAAATTTAGAATGACCATAAAATGTTAATGTTCTTTATTAGCAACCCACATTTCAACGATTTTTGTAATTTCAAATTAATGTATTTGGAAAATATAACTATTTTGTATATGACAATCGTAAATTCAAATGATTGAAATAGCCCTTTATTATTACATAGTTTGAAATTTTAATAAATTCTGTAAATTTGTAATGTCAATGTTACTAATTGTTTTACAATATTGAGGCCGCTTGAGTTATATAAACGAATATAAATGTAAGTGATGTTGCATTATTGCGTGATAAATGTTGAGATTTGCAATACCATTTTCTTTATTCTATAATTTATTTATCTGTTTTAAAAGTTTACATTTTAAATACATTGAAGAATTTAATATTTGTATTGAAATTAACAATTTATTTCCATATGCTTAAAACTCTTTTAGTCTAACGATGAGAATCCACATTTTCCATCAAGGTACTAGATTTTGAGTAAGGTGTGTAAGTGAGCTACTTCGATCTTGAAATTGACTACAAATTTGACTGCTTTGGAGGAGGTAAGTATTTTGACTTTATCAAATTCCGCTCTAACATCTGGACATCTTCCATGATTTGATAATGATTGCAGTATATTATGGTTTTTATGATGTGTTGAAATTGGCATGCTCACTACTAACGCATCTTCTTTAGTTCTTTATTGCTTCTCACCGACTTGGTTAAAGTATTATGAATTTGTTCATGCAGGCAAGGTATGGATTATATGTTTCAAACAACCCTTTCTTCTTACAATTTAATTGAAGTATGTGTGGTAATTGAATTCTCTATTGTCTTAAAGGTCTAGTTCTCTCTTAGCCTCTTGTATCTCTTTCTTGTGTATCTCTTAGTTGAAAACGAATGTGAGCCAAGTCCATTATGACTGAAACTAAAAGGGGTTGATATATATACTGTTTGTTTACGTCTATTCTAAATCAAGAGGTTTTGGTTAAAAAAAAGGATCAAATCAGAATGGTGCACTGTACACCACTTGATATTGACCATCAACTGAAGATTCAACATGGTAAAATGCAAGTGTCAAGTTCAAATTCTATACAAATTTATGAAGAGTCATGTCTATCCATGTGAAGAGTTATGAT

mRNA sequence

CCTGGTTGCCTCACTCCATCATCTATCTGTCGCATCCCATCGTCCCAAGGGTTATACTATTCATCAACTTGATCTCTCATGGCCCATCTAAGTAGAGTTGAATTGGCCACTATTTATTGACACTAAATTCAGTGGCCTTCTCTAAACCCTGCTCCTGCGAATCTGTATCAAACTCTACGCAAAAGCCCTAAACCCTAATAGCAGAAAAATCAATTGGGAAATATGATGATCTTCTTTGGTTATTACCCTAAATTCCTCAGCTCCAAATTTTCATCATTCAAAACTACGGCTTGGTTTCTCTGCAATTTCAATCCCTCAAGATCGATGACCTAATCCACCTCCATTCCCAAAAAGCTCCAAAGGGTCCGTGACCATGTTTACGATTACATGGAAGTTGAGAAAAAAACCCGAAAAGTCCTCAAGTTTCAGGACCTTATTCTCACCCAAATCAATCAAACCATCCCAGTTTCTCACCTCGATGTCTTATCTCGTCGCCTTGGCTTCAAGCAGCACGAAGCTGGGGCCTTCGTCCTTAAATTCCCTCATGTATTTGAAATCTACGAGCACCCTGTTCAACGGATCCTCTATTGCAGGTTAACCCGAAAAGCCCACCTCCAAATCTAGCAGCAAAAGCAGGCTGTGATTACCCAGATTCCAGATGCTGTGACTCGGCTGAGGAAGCTCTTGATGATGTCCAACAATGGCCGCCTTCGCCTTGAGCACATTCGGATTGCCCGGTCCGAATTCGGGTTACCTGATGATTTCGAGTACTCGATAATTCTCAAGTACCCTAAATTCTTTAGACTGTTTGATGCAAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGGGATCCAAACCTTACTGTTTGTGCAATAGAGAGAGCTAGGGAGAGAGTTTATAGAGAGAAAGGAAGTGATGCTGAGGATATTAGATTCTCTTTCATTGTGAATTTTCCTCCTGGCTTCAAGATAGGGAAGTATTACAGAATTGCAGAGTGGAAATGGCAGCGGCTTCCATATTGGTCGCCTTACGAGGATGTTTCTGAATACGATATGAGGTCCATTGAAGCTCAAAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCTTTGACTATGGAGAAAAAGATCACCTTGGAACGGATTGCGCATTTTCGATTAGCGATGAATCTGCCAAAGAAGTTGAAGGAGTTCCTTCTTCAGCACCAGGGGATTTTCTACATTTCAACCAGAGGAAACCATGGGAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATAGGAGGAGTGAGTTAATTGAGCCAAATGATGTATATTTGGCTAGAAGGAAGTTGGCTGAGTTGGTTTTGCTTAGTCCAAGGAAGGCAAAAATAGACAGGGAACTTGTTGGGTACAGGAGAGAAAGAGTGGGTTATGATATGGAAAGCTTTAGGACAGATTATGTGGAGGATAAATTTGAACATTTTGGTGCTGGGGACAAAGGCAATGTGAGAGATGTTTTGGACTCAGACATGGGTTCTGATGCTGAATCTGATTACTCTGATGACGATAATGATAATGATGATAGAACTTTCAAGGCAGAGGATGTGAATATAACCGAATAGCATAAACTCAATGGTCCCAACAGTCTTCTTGGAGCTGCTATTTATTTCCATCAGATTCAGATGTGAATGTGATGACGCGCCTCAAAACTCATTTGGTAACTGACTGACACAATACTGTGAAGAAGCATTGTGAATTATCCTTGTCGTGAGCAAAGGCAAGCGTTTTTCAGACATGAATTTTGTTTACCAGGAGCATAATGGCCATGATATTCATTTAGGCATTTGTTGTTCGATTGGGGTTGTAGATCTTTTTGGTTGTGATATATGGTTTGGCATTGTGAAGGGGCATGGCTGAAAGAGGAGTGGCACCATATTTAAAGTTGAAGATGCCACAAGCACGGAATCCAAATTCTGAAGGAGAATAAGAATTGGGTAAAATGCAGATGAATCCCTCCCACTTTGATGGCCAGAATCTGCAAAAATACAGCATGCAAAGTCCTTGTAGTTTCATGATTAGCTCCAAGCTGCGAAGAATATGTCAAGGAAAAAGAGAGCTTCTGGAAGATTTTTATTTCAGGTACTAGATTTTGAGTAAGGTGTGTAAGTGAGCTACTTCGATCTTGAAATTGACTACAAATTTGACTGCTTTGGAGGAGGCAAGGTATGGATTATATGTTTCAAACAACCCTTTCTTCTTACAATTTAATTGAAGTATGTGTGGTAATTGAATTCTCTATTGTCTTAAAGGTCTAGTTCTCTCTTAGCCTCTTGTATCTCTTTCTTGTGTATCTCTTAGTTGAAAACGAATGTGAGCCAAGTCCATTATGACTGAAACTAAAAGGGGTTGATATATATACTGTTTGTTTACGTCTATTCTAAATCAAGAGGTTTTGGTTAAAAAAAAGGATCAAATCAGAATGGTGCACTGTACACCACTTGATATTGACCATCAACTGAAGATTCAACATGGTAAAATGCAAGTGTCAAGTTCAAATTCTATACAAATTTATGAAGAGTCATGTCTATCCATGTGAAGAGTTATGAT

Coding sequence (CDS)

ATGATGTCCAACAATGGCCGCCTTCGCCTTGAGCACATTCGGATTGCCCGGTCCGAATTCGGGTTACCTGATGATTTCGAGTACTCGATAATTCTCAAGTACCCTAAATTCTTTAGACTGTTTGATGCAAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGGGATCCAAACCTTACTGTTTGTGCAATAGAGAGAGCTAGGGAGAGAGTTTATAGAGAGAAAGGAAGTGATGCTGAGGATATTAGATTCTCTTTCATTGTGAATTTTCCTCCTGGCTTCAAGATAGGGAAGTATTACAGAATTGCAGAGTGGAAATGGCAGCGGCTTCCATATTGGTCGCCTTACGAGGATGTTTCTGAATACGATATGAGGTCCATTGAAGCTCAAAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCTTTGACTATGGAGAAAAAGATCACCTTGGAACGGATTGCGCATTTTCGATTAGCGATGAATCTGCCAAAGAAGTTGAAGGAGTTCCTTCTTCAGCACCAGGGGATTTTCTACATTTCAACCAGAGGAAACCATGGGAAGCTTCACACTGTTTTCCTCAGGGAGGCTTATAGGAGGAGTGAGTTAATTGAGCCAAATGATGTATATTTGGCTAGAAGGAAGTTGGCTGAGTTGGTTTTGCTTAGTCCAAGGAAGGCAAAAATAGACAGGGAACTTGTTGGGTACAGGAGAGAAAGAGTGGGTTATGATATGGAAAGCTTTAGGACAGATTATGTGGAGGATAAATTTGAACATTTTGGTGCTGGGGACAAAGGCAATGTGAGAGATGTTTTGGACTCAGACATGGGTTCTGATGCTGAATCTGATTACTCTGATGACGATAATGATAATGATGATAGAACTTTCAAGGCAGAGGATGTGAATATAACCGAATAG

Protein sequence

MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNLTVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVGYRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRTFKAEDVNITE
Homology
BLAST of Lcy01g009610 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 4.9e-115
Identity = 196/242 (80.99%), Postives = 224/242 (92.56%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSN GR+RLEH+RIAR+EFGLP+DFEYS+ILK+P+FFRL D +ETR+KYIEIVE+DPNL
Sbjct: 158 MMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNL 217

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           ++CAIER RE  YR KG DAED+RFSF+VNFPPGFKIGKY+RIA WKWQRLPYWSPYED+
Sbjct: 218 SICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDI 277

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           S YD+RS+EAQ R+EKR+VA IHE+LSLT+EKKITLERIAHFR  MNLPKKLKEFLLQHQ
Sbjct: 278 SGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQ 337

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGN+GKLHTVFLRE Y+R EL+EPNDVYLARR+LAELVL+SPRKAK+D ELV 
Sbjct: 338 GIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVR 397

Query: 241 YR 243
           YR
Sbjct: 398 YR 399

BLAST of Lcy01g009610 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.9e-28
Identity = 102/313 (32.59%), Postives = 165/313 (52.72%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMS   R+ +E +   + + GLP +F  ++ L+YP++FR+   +  R   +E+   DP L
Sbjct: 167 MMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRV--VRMDRGPALELTHWDPEL 226

Query: 61  TVCAIERARERVYREKGSDAED--------IRFSFIVNFPPGFKI--GKYYRIAEWKWQR 120
            V A E A E     +  +AE+        ++F+  V  P G K+  G+  RIA +K   
Sbjct: 227 AVSAAELAEE---ESRAREAEERNLIIDRPLKFN-RVRLPKGLKLTRGEARRIARFK--E 286

Query: 121 LPYWSPYEDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPK 180
           +PY SPY D S   +RS   +K  EK A   +HE+LSLT+EK+  ++ + HFR      +
Sbjct: 287 MPYISPYADFSH--LRSGSDEK--EKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQ 346

Query: 181 KLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPR 240
            L+  +++H  +FY+S +G+     +VFLREAY+ S+L+E N + L + K+  LV + PR
Sbjct: 347 SLRGMIIRHPDMFYVSFKGDR---DSVFLREAYKDSQLVEKNQLVLLKEKMRALVAV-PR 406

Query: 241 KAKIDRELVGYRRERVGYDMESFRTDYVEDKFEHFGAGDKG--NVRDVLDSDMGSDAESD 299
             +  R  VG   E  G +      D V D  E +   D+G  ++ D++    G  +++D
Sbjct: 407 FPR--RAAVGTGEEAEGMNGSLQSRDQVSD--EEYDDEDEGLSDMEDLISELSGGKSDAD 459

BLAST of Lcy01g009610 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.0e-27
Identity = 105/318 (33.02%), Postives = 167/318 (52.52%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMS + R+ +E I   +++ GLP +F  +I L+YP++FR+   +  R   +E+   DP L
Sbjct: 173 MMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRV--VQMDRGPGLELTHWDPEL 232

Query: 61  TVCAIE------RARERVYREKGSDAEDIRFSFIVNFPPGFKI--GKYYRIAEWKWQRLP 120
            V A E      RARE   R    D   ++F+  V  P G K+  G+  R+A++K   +P
Sbjct: 233 AVSAAEVAEEENRAREEQERNLIID-RPLKFN-RVKLPQGLKLSRGEARRVAQFK--EMP 292

Query: 121 YWSPYEDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKL 180
           Y SPY D S   +RS  A+K  EK A   +HE+LSLT+EK+  ++ + HFR      + L
Sbjct: 293 YISPYSDFSH--LRSGSAEK--EKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSL 352

Query: 181 KEFLLQHQGIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKA 240
           +  L++H  +FY+S +G+     +VFLREAY+ S+L+E + + L + K+  LV + PR  
Sbjct: 353 RGMLIRHPDMFYVSLKGDR---DSVFLREAYKNSQLVEKSKLVLLKEKMRALVAV-PRFP 412

Query: 241 KIDRELVGYRRERV--GYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYS 300
           +          +R      M S  +D  +D+ E  G  D   + D++    G  +++DY 
Sbjct: 413 RRGVPATSEEADRTNGAAQMLSEGSDVEDDEDE--GLSD---MEDLISEISGGKSDTDYH 471

Query: 301 DDD---NDNDDRTFKAED 306
             D    +NDD     ED
Sbjct: 473 WGDGWVGENDDSPPDFED 471

BLAST of Lcy01g009610 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-25
Identity = 98/307 (31.92%), Postives = 158/307 (51.47%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMS + R+ LE I   +++ GLP +F  +I  +YP++FR+      R   +E+   DP L
Sbjct: 188 MMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRV--VPTPRGPALELTHWDPEL 247

Query: 61  TVCAIE------RARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYW 120
            V A E      R RE   R    D    +F+  V  P G  + K       +++ + Y 
Sbjct: 248 AVSAAELSEDDNRTRESEERNLIIDRPP-KFN-RVKLPRGLNLSKSETRKISQFRDMQYI 307

Query: 121 SPYEDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKE 180
           SPY+D S     ++E     EK A   IHE+LSLT EK+  ++ + HFR      ++L+ 
Sbjct: 308 SPYKDFSHLRSGTLE----KEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRG 367

Query: 181 FLLQHQGIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLS--PRKA 240
            L++H  +FY+S +G      +VFLREAYR SELI+ + + L + K+  LV +   PR+ 
Sbjct: 368 MLIRHPDLFYVSLKGER---DSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFPRRG 427

Query: 241 KIDRELVGYRRERVGYDMESFRTDY-VEDKFEHFGAGDKGNVRDVLD-SDMGSDAESDYS 298
                  G R++  G ++E   +D   E++ E   A +  +V   L+  D G+D + D++
Sbjct: 428 -------GPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDVDGYLEGEDGGNDDDGDWT 476

BLAST of Lcy01g009610 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-12
Identity = 71/250 (28.40%), Postives = 113/250 (45.20%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKE-TRNKYIEIVERDPN 60
           +MS +  L L  ++  +   GLPDD+     +     FR  D ++  +   ++    D  
Sbjct: 142 LMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGGDKV 201

Query: 61  LTVCAIERARERVYREKGS-DAEDIRFSFIVNFPPGFKIGKYYRIAEW--KWQRLPYWSP 120
           L+V      ++R    +G    E+I F       P        +I +W  ++Q+LPY SP
Sbjct: 202 LSVLQKNAMKKR----RGEVSLEEIEFPLF----PSKGCRLRVKIEDWLMEFQKLPYVSP 261

Query: 121 YEDVSEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFL 180
           Y+D S  D  S  A    EKR V  +HE+L L +E     +++   +    LP+K+ +  
Sbjct: 262 YDDYSCLDPSSDIA----EKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAF 321

Query: 181 LQHQGIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDR 240
            +H  IFY+S +    K  T  LRE YR    +E + V   R+K  +L+  S    K  R
Sbjct: 322 ERHPQIFYLSMK---NKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNSELILKSRR 376

Query: 241 ELVGYRRERV 247
              G+R E V
Sbjct: 382 NSFGFRDEGV 376

BLAST of Lcy01g009610 vs. ExPASy TrEMBL
Match: A0A6J1EMT6 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC111435790 PE=4 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 8.8e-152
Identity = 274/310 (88.39%), Postives = 295/310 (95.16%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSNNGRLRLEHIRIARSEFGLPDDFEYS++LKYP+FFRLFDAKETRNKYIEIVERDPNL
Sbjct: 157 MMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDPNL 216

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIE+ARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIA WKWQRLPYWSPYEDV
Sbjct: 217 TVCAIEKARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYEDV 276

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEML LT+EKKI+LERIAHFRLAM+LPKKLK+FLLQHQ
Sbjct: 277 SEYDMRSIEAQKRMEKRAVATIHEMLCLTVEKKISLERIAHFRLAMDLPKKLKDFLLQHQ 336

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHT+FLREAYRR ELIEPNDVYLARR LAELVLLSPRKAK++RELVG
Sbjct: 337 GIFYISTRGNHGKLHTIFLREAYRRGELIEPNDVYLARRTLAELVLLSPRKAKLNRELVG 396

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDMESFR D ++D    +GAGD+GNVRDVLDSD+GSD+ESD+SDD N + D T
Sbjct: 397 YRRERVGYDMESFRPDKLDD----YGAGDRGNVRDVLDSDVGSDSESDFSDDSNRSVDET 456

Query: 301 FKAEDVNITE 311
           F+ EDVNIT+
Sbjct: 457 FEEEDVNITK 462

BLAST of Lcy01g009610 vs. ExPASy TrEMBL
Match: A0A1S4DS47 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103504628 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.4e-151
Identity = 271/310 (87.42%), Postives = 292/310 (94.19%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSN GRLRLEHIRIARSEFGLPDDFEYS++LK+P+FFRLFDAKETRNKYIEIVERDP+L
Sbjct: 157 MMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSL 216

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIERARERVYRE+GSDAEDIRFSFIVNFPPGFKIGKY+RIA WKWQRLPYWSPYED+
Sbjct: 217 TVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDI 276

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKK+TLERIAHFRLAMNLPKKLK+FLLQHQ
Sbjct: 277 SEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQHQ 336

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHTVFLRE YRR EL+EPNDVYLARR LAELVLLSPRKAK+DRELVG
Sbjct: 337 GIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDRELVG 396

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDME+ RTDYVEDK + FG  +KGNVRDVLDSD+GSD ESD+SDDDN     +
Sbjct: 397 YRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDN----HS 456

Query: 301 FKAEDVNITE 311
            + EDV+ITE
Sbjct: 457 VEVEDVDITE 462

BLAST of Lcy01g009610 vs. ExPASy TrEMBL
Match: A0A5D3BLZ6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00370 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.4e-151
Identity = 271/310 (87.42%), Postives = 292/310 (94.19%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSN GRLRLEHIRIARSEFGLPDDFEYS++LK+P+FFRLFDAKETRNKYIEIVERDP+L
Sbjct: 123 MMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSL 182

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIERARERVYRE+GSDAEDIRFSFIVNFPPGFKIGKY+RIA WKWQRLPYWSPYED+
Sbjct: 183 TVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDI 242

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKK+TLERIAHFRLAMNLPKKLK+FLLQHQ
Sbjct: 243 SEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQHQ 302

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHTVFLRE YRR EL+EPNDVYLARR LAELVLLSPRKAK+DRELVG
Sbjct: 303 GIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDRELVG 362

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDME+ RTDYVEDK + FG  +KGNVRDVLDSD+GSD ESD+SDDDN     +
Sbjct: 363 YRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDN----HS 422

Query: 301 FKAEDVNITE 311
            + EDV+ITE
Sbjct: 423 VEVEDVDITE 428

BLAST of Lcy01g009610 vs. ExPASy TrEMBL
Match: A0A0A0KLD1 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173460 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.4e-151
Identity = 272/310 (87.74%), Postives = 292/310 (94.19%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSNNGRLRLEHIRIARSEFGLPDDFEYS++LK+P+FFRLFDAKETRNKYIEIVERDP+L
Sbjct: 123 MMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSL 182

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIERARERVYREKGSDAEDIRFSF+VNFPPGFKIGKY+RIA WKWQRLPYWSPYED+
Sbjct: 183 TVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDI 242

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKKITLERIAHFRLAM LPKKLK+FLLQHQ
Sbjct: 243 SEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQ 302

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHTVFLRE YRRSEL+EPNDVYLARR+LAELVLLSPRKA +DRELVG
Sbjct: 303 GIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDRELVG 362

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDME+ RTDYVEDK   FG  +KGNVRDVLDSD+GSD ESD+SDDDN     +
Sbjct: 363 YRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDN----HS 422

Query: 301 FKAEDVNITE 311
            + EDV+ITE
Sbjct: 423 VEVEDVDITE 428

BLAST of Lcy01g009610 vs. ExPASy TrEMBL
Match: A0A6J1I4Q3 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111469138 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 2.8e-150
Identity = 271/310 (87.42%), Postives = 293/310 (94.52%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSNNGRLRLEHIRIARSEFGLPDDFEYS++LKYP+FFRLFDAKETRNKYIE+VERDPNL
Sbjct: 157 MMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIELVERDPNL 216

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIE+ARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIA WKWQRLPYWSPYEDV
Sbjct: 217 TVCAIEKARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYEDV 276

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEML LT+EKKI+LERIAHFR AM+LPKKLK+FLLQHQ
Sbjct: 277 SEYDMRSIEAQKRMEKRAVATIHEMLCLTVEKKISLERIAHFRTAMDLPKKLKDFLLQHQ 336

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHT+FLREAYRR ELIEPNDVYLARRKLAELVLLSPRKA+++RELVG
Sbjct: 337 GIFYISTRGNHGKLHTIFLREAYRRGELIEPNDVYLARRKLAELVLLSPRKAQLNRELVG 396

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDMES R D ++D    +G GD+GNVRDVLDSDMGSD+ESD+SDD N + D T
Sbjct: 397 YRRERVGYDMESSRPDKLDD----YGVGDRGNVRDVLDSDMGSDSESDFSDDSNRSVDET 456

Query: 301 FKAEDVNITE 311
           F+ EDVNIT+
Sbjct: 457 FEEEDVNITK 462

BLAST of Lcy01g009610 vs. NCBI nr
Match: XP_038876292.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038876293.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida])

HSP 1 Score: 558.9 bits (1439), Expect = 2.7e-155
Identity = 279/310 (90.00%), Postives = 295/310 (95.16%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSNNGRLRLEHIRIARSEFGLPDDFEYS++LKYP+FFRLFDAKETRNKYIEIVERDPNL
Sbjct: 156 MMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDPNL 215

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
            VCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKY+RIA WKWQRLPYWSPYEDV
Sbjct: 216 AVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDV 275

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           S+YDMRSIEA KRMEKRAVATIHEMLSLT+EKKITLERIAHFRLAMNLP KLK+FLLQHQ
Sbjct: 276 SKYDMRSIEALKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMNLPNKLKDFLLQHQ 335

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHTVFLRE YRR ELIEPNDVYLARRKLAELVLLSPRKAK+D+ELVG
Sbjct: 336 GIFYISTRGNHGKLHTVFLREGYRRGELIEPNDVYLARRKLAELVLLSPRKAKLDKELVG 395

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDMESFRTDYVEDKF+ F  G+KGNVRDVLDSD+ SD E ++SDDDN + D+T
Sbjct: 396 YRRERVGYDMESFRTDYVEDKFDDFAVGNKGNVRDVLDSDLDSDVEPNFSDDDNHSVDKT 455

Query: 301 FKAEDVNITE 311
           FKAEDVN TE
Sbjct: 456 FKAEDVNETE 465

BLAST of Lcy01g009610 vs. NCBI nr
Match: XP_022929109.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata])

HSP 1 Score: 546.2 bits (1406), Expect = 1.8e-151
Identity = 274/310 (88.39%), Postives = 295/310 (95.16%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSNNGRLRLEHIRIARSEFGLPDDFEYS++LKYP+FFRLFDAKETRNKYIEIVERDPNL
Sbjct: 157 MMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDPNL 216

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIE+ARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIA WKWQRLPYWSPYEDV
Sbjct: 217 TVCAIEKARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYEDV 276

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEML LT+EKKI+LERIAHFRLAM+LPKKLK+FLLQHQ
Sbjct: 277 SEYDMRSIEAQKRMEKRAVATIHEMLCLTVEKKISLERIAHFRLAMDLPKKLKDFLLQHQ 336

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHT+FLREAYRR ELIEPNDVYLARR LAELVLLSPRKAK++RELVG
Sbjct: 337 GIFYISTRGNHGKLHTIFLREAYRRGELIEPNDVYLARRTLAELVLLSPRKAKLNRELVG 396

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDMESFR D ++D    +GAGD+GNVRDVLDSD+GSD+ESD+SDD N + D T
Sbjct: 397 YRRERVGYDMESFRPDKLDD----YGAGDRGNVRDVLDSDVGSDSESDFSDDSNRSVDET 456

Query: 301 FKAEDVNITE 311
           F+ EDVNIT+
Sbjct: 457 FEEEDVNITK 462

BLAST of Lcy01g009610 vs. NCBI nr
Match: XP_016898810.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898811.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898812.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898813.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 543.9 bits (1400), Expect = 9.0e-151
Identity = 271/310 (87.42%), Postives = 292/310 (94.19%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSN GRLRLEHIRIARSEFGLPDDFEYS++LK+P+FFRLFDAKETRNKYIEIVERDP+L
Sbjct: 157 MMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSL 216

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIERARERVYRE+GSDAEDIRFSFIVNFPPGFKIGKY+RIA WKWQRLPYWSPYED+
Sbjct: 217 TVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDI 276

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKK+TLERIAHFRLAMNLPKKLK+FLLQHQ
Sbjct: 277 SEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQHQ 336

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHTVFLRE YRR EL+EPNDVYLARR LAELVLLSPRKAK+DRELVG
Sbjct: 337 GIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDRELVG 396

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDME+ RTDYVEDK + FG  +KGNVRDVLDSD+GSD ESD+SDDDN     +
Sbjct: 397 YRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDN----HS 456

Query: 301 FKAEDVNITE 311
            + EDV+ITE
Sbjct: 457 VEVEDVDITE 462

BLAST of Lcy01g009610 vs. NCBI nr
Match: XP_004143708.2 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KAE8647948.1 hypothetical protein Csa_000134 [Cucumis sativus])

HSP 1 Score: 543.9 bits (1400), Expect = 9.0e-151
Identity = 272/310 (87.74%), Postives = 292/310 (94.19%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSNNGRLRLEHIRIARSEFGLPDDFEYS++LK+P+FFRLFDAKETRNKYIEIVERDP+L
Sbjct: 157 MMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSL 216

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIERARERVYREKGSDAEDIRFSF+VNFPPGFKIGKY+RIA WKWQRLPYWSPYED+
Sbjct: 217 TVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDI 276

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKKITLERIAHFRLAM LPKKLK+FLLQHQ
Sbjct: 277 SEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQ 336

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHTVFLRE YRRSEL+EPNDVYLARR+LAELVLLSPRKA +DRELVG
Sbjct: 337 GIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDRELVG 396

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDME+ RTDYVEDK   FG  +KGNVRDVLDSD+GSD ESD+SDDDN     +
Sbjct: 397 YRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDN----HS 456

Query: 301 FKAEDVNITE 311
            + EDV+ITE
Sbjct: 457 VEVEDVDITE 462

BLAST of Lcy01g009610 vs. NCBI nr
Match: TYK00294.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa])

HSP 1 Score: 543.9 bits (1400), Expect = 9.0e-151
Identity = 271/310 (87.42%), Postives = 292/310 (94.19%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSN GRLRLEHIRIARSEFGLPDDFEYS++LK+P+FFRLFDAKETRNKYIEIVERDP+L
Sbjct: 123 MMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSL 182

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           TVCAIERARERVYRE+GSDAEDIRFSFIVNFPPGFKIGKY+RIA WKWQRLPYWSPYED+
Sbjct: 183 TVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDI 242

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           SEYDMRSIEAQKRMEKRAVATIHEMLSLT+EKK+TLERIAHFRLAMNLPKKLK+FLLQHQ
Sbjct: 243 SEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQHQ 302

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGNHGKLHTVFLRE YRR EL+EPNDVYLARR LAELVLLSPRKAK+DRELVG
Sbjct: 303 GIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDRELVG 362

Query: 241 YRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDDRT 300
           YRRERVGYDME+ RTDYVEDK + FG  +KGNVRDVLDSD+GSD ESD+SDDDN     +
Sbjct: 363 YRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDN----HS 422

Query: 301 FKAEDVNITE 311
            + EDV+ITE
Sbjct: 423 VEVEDVDITE 428

BLAST of Lcy01g009610 vs. TAIR 10
Match: AT4G33495.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 415.6 bits (1067), Expect = 3.5e-116
Identity = 196/242 (80.99%), Postives = 224/242 (92.56%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMSN GR+RLEH+RIAR+EFGLP+DFEYS+ILK+P+FFRL D +ETR+KYIEIVE+DPNL
Sbjct: 158 MMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNL 217

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
           ++CAIER RE  YR KG DAED+RFSF+VNFPPGFKIGKY+RIA WKWQRLPYWSPYED+
Sbjct: 218 SICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDI 277

Query: 121 SEYDMRSIEAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQ 180
           S YD+RS+EAQ R+EKR+VA IHE+LSLT+EKKITLERIAHFR  MNLPKKLKEFLLQHQ
Sbjct: 278 SGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQ 337

Query: 181 GIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELVG 240
           GIFYISTRGN+GKLHTVFLRE Y+R EL+EPNDVYLARR+LAELVL+SPRKAK+D ELV 
Sbjct: 338 GIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVR 397

Query: 241 YR 243
           YR
Sbjct: 398 YR 399

BLAST of Lcy01g009610 vs. TAIR 10
Match: AT5G45790.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 180.3 bits (456), Expect = 2.4e-45
Identity = 106/249 (42.57%), Postives = 153/249 (61.45%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVER-DPN 60
           ++S +G LR+  +R+ R E GLP+DF  SI+ KY   FRL D +      +E+V+R D +
Sbjct: 93  LLSKHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLET-----LELVDRDDES 152

Query: 61  LTVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYED 120
           L V  +E  RE  YREK     +  ++F ++ P GFKI K +R     WQR+PY  P   
Sbjct: 153 LCVAKVEEWREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKP--- 212

Query: 121 VSEYDMRSI-EAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQ 180
              YD + I    +R EKR VA IHE+LSLT+EK + +ER+AHFR  + +   ++E +L+
Sbjct: 213 ---YDRKEISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILK 272

Query: 181 HQGIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAK--IDR 240
           H GIFY+ST+G+     T+FLREAY +  LIEPN +Y  RRK+ +LVLL  R ++  + R
Sbjct: 273 HPGIFYVSTKGSS---QTLFLREAYSKGCLIEPNPIYNVRRKMLDLVLLKTRYSRMLLQR 327

Query: 241 ELVGYRRER 246
           E   +R E+
Sbjct: 333 EDETHREEK 327

BLAST of Lcy01g009610 vs. TAIR 10
Match: AT5G45790.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 180.3 bits (456), Expect = 2.4e-45
Identity = 106/249 (42.57%), Postives = 153/249 (61.45%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVER-DPN 60
           ++S +G LR+  +R+ R E GLP+DF  SI+ KY   FRL D +      +E+V+R D +
Sbjct: 178 LLSKHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLET-----LELVDRDDES 237

Query: 61  LTVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYED 120
           L V  +E  RE  YREK     +  ++F ++ P GFKI K +R     WQR+PY  P   
Sbjct: 238 LCVAKVEEWREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKP--- 297

Query: 121 VSEYDMRSI-EAQKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQ 180
              YD + I    +R EKR VA IHE+LSLT+EK + +ER+AHFR  + +   ++E +L+
Sbjct: 298 ---YDRKEISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILK 357

Query: 181 HQGIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAK--IDR 240
           H GIFY+ST+G+     T+FLREAY +  LIEPN +Y  RRK+ +LVLL  R ++  + R
Sbjct: 358 HPGIFYVSTKGSS---QTLFLREAYSKGCLIEPNPIYNVRRKMLDLVLLKTRYSRMLLQR 412

Query: 241 ELVGYRRER 246
           E   +R E+
Sbjct: 418 EDETHREEK 412

BLAST of Lcy01g009610 vs. TAIR 10
Match: AT1G06440.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 168.3 bits (425), Expect = 9.6e-42
Identity = 95/218 (43.58%), Postives = 132/218 (60.55%), Query Frame = 0

Query: 19  EFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNLT--VCAIERAR--ERVYR 78
           E GLPDDFE S+I K P  F+L D  E+    +E+V+ +        A+E+ R  E    
Sbjct: 164 ELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQEEEKRLEFEAAVEKWRVVECSKE 223

Query: 79  EKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDVSEYDMRSIEAQKRM 138
           +   D  +I+FSF  ++PPG ++ K ++    +WQRLPY  PYED+     +S      +
Sbjct: 224 DCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRLPYVGPYEDMVG-KKKSRSGVMGI 283

Query: 139 EKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKL 198
           EKRAVA  HE L+LT+EK + +E+I+HFR    +   +++  L H G+FY+ST+   GK 
Sbjct: 284 EKRAVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDLNIRDLFLDHPGMFYVSTK---GKR 343

Query: 199 HTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKA 233
           HTVFLREAY R  LI+PN VY ARRKL +LVLL    A
Sbjct: 344 HTVFLREAYERGRLIDPNPVYDARRKLLDLVLLGRHAA 377

BLAST of Lcy01g009610 vs. TAIR 10
Match: AT5G21970.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 120.2 bits (300), Expect = 3.0e-27
Identity = 92/299 (30.77%), Postives = 145/299 (48.49%), Query Frame = 0

Query: 1   MMSNNGRLRLEHIRIARSEFGLPDDFEYSIILKYPKFFRLFDAKETRNKYIEIVERDPNL 60
           MMS + +L L+ I   R +FGLP DF  + +  +P+ F++    +   +Y+E+V  +P  
Sbjct: 165 MMSVDKKLPLDKIVHFRRDFGLPLDFRINWVYNFPQHFKVVKLGD-GEEYLELVSWNPAW 224

Query: 61  TVCAIERARERVYREKGSDAEDIRFSFIVNFPPGFKIGKYYRIAEWKWQRLPYWSPYEDV 120
            +  +E+    +  +       +  +F + FPP +K    YR     +Q+  Y SPY D 
Sbjct: 225 AITELEKKTLGITEDCEHKPGMLSLAFPMKFPPSYKKMYRYRGKIEHFQKRSYLSPYADA 284

Query: 121 SEYDMRSIEA-QKRMEKRAVATIHEMLSLTMEKKITLERIAHFRLAMNLPKKLKEFLLQH 180
                R +EA  K  +KRA+A +HE+LS T+EK++  + + HFR    +P+KL    L+H
Sbjct: 285 -----RGLEAGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKH 344

Query: 181 QGIFYISTRGNHGKLHTVFLREAYRRSELIEPNDVYLARRKLAELVLLSPRKAKIDRELV 240
            GIFY+S R   GK  +VFL E Y   ELIE   + L + KL               +  
Sbjct: 345 CGIFYVSER---GKRFSVFLTEGYEGPELIEKCPLILWKEKLL--------------KFT 404

Query: 241 GYRRERVGYDMESFRTDYVEDKFEHFGAGDKGNVRDVLDSDMGSDAESDYSDDDNDNDD 299
           GYR  +      S   D  E +    G+GD+       D  +G + + DY D   D+D+
Sbjct: 405 GYRGRKRDIQTYSDTLDMEERELLESGSGDE-------DLSVGFEKDGDYDDVVTDDDE 433

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q689D64.9e-11580.99Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1... [more]
B6TTV85.9e-2832.59Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=... [more]
Q65XL55.0e-2733.02Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon... [more]
A0MFS52.1e-2531.92Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
Q9ZUZ62.0e-1228.40Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W... [more]
Match NameE-valueIdentityDescription
A0A6J1EMT68.8e-15288.39protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC11143579... [more]
A0A1S4DS474.4e-15187.42protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103504628 PE=4... [more]
A0A5D3BLZ64.4e-15187.42Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A0A0KLD14.4e-15187.74PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173460 PE=4 S... [more]
A0A6J1I4Q32.8e-15087.42protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111469138 ... [more]
Match NameE-valueIdentityDescription
XP_038876292.12.7e-15590.00protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038876293.1 protein ... [more]
XP_022929109.11.8e-15188.39protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata][more]
XP_016898810.19.0e-15187.42PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898811.1 PR... [more]
XP_004143708.29.0e-15187.74protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KAE8647948.1 hypothetical... [more]
TYK00294.19.0e-15187.42protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT4G33495.13.5e-11680.99Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT5G45790.12.4e-4542.57Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT5G45790.22.4e-4542.57Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT1G06440.19.6e-4243.58Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT5G21970.13.0e-2730.77Ubiquitin carboxyl-terminal hydrolase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021099Plant organelle RNA recognition domainPFAMPF11955PORRcoord: 1..228
e-value: 2.2E-78
score: 263.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..310
IPR045040PORR familyPANTHERPTHR31476PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTICcoord: 1..287
IPR040295Protein root primordium defective 1-likePANTHERPTHR31476:SF9PROTEIN ROOT PRIMORDIUM DEFECTIVE 1coord: 1..287

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g009610.1Lcy01g009610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003723 RNA binding