Lcy01g008620 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g008620
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Plant transposase
Location	Chr01: 21198212 .. 21198664 (-)
RNA-Seq Expression	Lcy01g008620
Synteny	Lcy01g008620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGAACCACTTCTTCAACTAATGTGGCCGATGATGCAATAAGTAAAGTTCTTGGTCCCGATCGTGGTCATATTAGAGGACTTGGGTTTGGAGTTACTTCTTCAAAGTTGTCTACATTCTCTCAAAGAGATAATGAGTATAAGAAACTTGAAGAAAAGTATAAAAAGATGGAGGAACAAATGTTTGAAATGAGATCCATGGTTTCTCATCTATTGAAATCTCAAGTATGTTGGAATAGTACAAATTAGCATAGATTTTTATTTATGGTTTTCTTTTTAATCATATATTACTTGATTTCTCTTTTTGACTCTTTCTAAATTTAGGGTCAAACAAGTGAGCAATTTTCTAATGCTACAAATGAACACATGGTTGACAAAGTTACTACCAACCAAACTGAATTTTCACCTTTGGTAATGTATTCTTTGTTAATTTCTTGCATTCTATTTTAA

mRNA sequence

ATGGAAAGAACCACTTCTTCAACTAATGTGGCCGATGATGCAATAAGTAAAGTTCTTGGTCCCGATCGTGGTCATATTAGAGGACTTGGGTTTGGAGTTACTTCTTCAAAGTTGTCTACATTCTCTCAAAGAGATAATGAGTATAAGAAACTTGAAGAAAAGTATAAAAAGATGGAGGAACAAATGTTTGAAATGAGATCCATGGTTTCTCATCTATTGAAATCTCAAGGTCAAACAAGTGAGCAATTTTCTAATGCTACAAATGAACACATGGTTGACAAAGTTACTACCAACCAAACTGAATTTTCACCTTTGGTAATGTATTCTTTGTTAATTTCTTGCATTCTATTTTAA

Coding sequence (CDS)

ATGGAAAGAACCACTTCTTCAACTAATGTGGCCGATGATGCAATAAGTAAAGTTCTTGGTCCCGATCGTGGTCATATTAGAGGACTTGGGTTTGGAGTTACTTCTTCAAAGTTGTCTACATTCTCTCAAAGAGATAATGAGTATAAGAAACTTGAAGAAAAGTATAAAAAGATGGAGGAACAAATGTTTGAAATGAGATCCATGGTTTCTCATCTATTGAAATCTCAAGGTCAAACAAGTGAGCAATTTTCTAATGCTACAAATGAACACATGGTTGACAAAGTTACTACCAACCAAACTGAATTTTCACCTTTGGTAATGTATTCTTTGTTAATTTCTTGCATTCTATTTTAA

Protein sequence

MERTTSSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEMRSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSPLVMYSLLISCILF

Homology

[Close]

BLAST of Lcy01g008620 vs. ExPASy TrEMBL
Match: A0A5D3DEJ8 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold543G00110 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.7e-24
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 6   SSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEM 65
           SS +VA+DAISKVLGPDRGHIR  GFGVT+S  S  SQ+D+ Y KLEEK +KME +M +M
Sbjct: 259 SSKDVANDAISKVLGPDRGHIRAFGFGVTTSNFSFLSQKDDHYAKLEEKCEKMEVEMTQM 318

Query: 66  RSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSP 105
           RS++SHLLKSQG  S+Q SNATN+ +V+ V TN    SP
Sbjct: 319 RSLISHLLKSQGNGSDQLSNATNDQVVNNVATNPIGTSP 357

[Close]

BLAST of Lcy01g008620 vs. ExPASy TrEMBL
Match: A0A5A7U615 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00240 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 6   SSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEM 65
           SS +VA+  ISKVLGPDRGHIR  GFGVT+S  S  SQ+D+ Y KLEEK +KME +M +M
Sbjct: 132 SSKDVANYVISKVLGPDRGHIRAFGFGVTTSNFSLLSQKDDHYAKLEEKCEKMEVEMTQM 191

Query: 66  RSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSPL 106
           R ++SHLLKSQG  S+Q SNATN+ +V+ V TN    SPL
Sbjct: 192 RYLISHLLKSQGNGSDQLSNATNDQVVNNVATNPIGTSPL 231

[Close]

BLAST of Lcy01g008620 vs. ExPASy TrEMBL
Match: A0A5D3BM96 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00630 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.5e-22
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 6   SSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEM 65
           SS ++ +DAISKVLGPDR HIR  GFGVT S  S  SQ+D+ Y KLEEK +KME +M +M
Sbjct: 289 SSKDMTNDAISKVLGPDRDHIRAFGFGVTISNFSLLSQKDDHYAKLEEKCEKMEVEMTQM 348

Query: 66  RSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSP 105
           RS++SHLLKSQG  S+Q SNATN+ +V+ V TN    SP
Sbjct: 349 RSLISHLLKSQGNGSDQLSNATNDQVVNNVATNPIGTSP 387

[Close]

BLAST of Lcy01g008620 vs. ExPASy TrEMBL
Match: A0A5A7SMK7 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00730 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.5e-22
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 6   SSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEM 65
           SS ++ +DAISKVLGPDR HIR  GFGVT S  S  SQ+D+ Y KLEEK +KME +M +M
Sbjct: 692 SSKDMTNDAISKVLGPDRDHIRAFGFGVTISNFSLLSQKDDHYAKLEEKCEKMEVEMTQM 751

Query: 66  RSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSP 105
           RS++SHLLKSQG  S+Q SNATN+ +V+ V TN    SP
Sbjct: 752 RSLISHLLKSQGNGSDQLSNATNDQVVNNVATNPIGTSP 790

[Close]

BLAST of Lcy01g008620 vs. ExPASy TrEMBL
Match: A0A5A7V0I6 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001110 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-20
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 3   RTTSSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQM 62
           R TSS +VA+DAISKV  PDRG+IR  GF VT+SK S  S++D  Y KLEEK +KME +M
Sbjct: 6   RNTSSKDVANDAISKVPIPDRGYIRAFGFRVTTSKFSLLSKKDGHYAKLEEKCEKMEVEM 65

Query: 63  FEMRSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSP 105
             MRS++SH+LKSQ   S+Q SNA N  +V+ V TN  E SP
Sbjct: 66  SRMRSLISHVLKSQDNGSKQHSNAINNQLVNNVATNPIETSP 107

[Close]

BLAST of Lcy01g008620 vs. NCBI nr
Match: TYK21965.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 6   SSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEM 65
           SS +VA+DAISKVLGPDRGHIR  GFGVT+S  S  SQ+D+ Y KLEEK +KME +M +M
Sbjct: 259 SSKDVANDAISKVLGPDRGHIRAFGFGVTTSNFSFLSQKDDHYAKLEEKCEKMEVEMTQM 318

Query: 66  RSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSP 105
           RS++SHLLKSQG  S+Q SNATN+ +V+ V TN    SP
Sbjct: 319 RSLISHLLKSQGNGSDQLSNATNDQVVNNVATNPIGTSP 357

[Close]

BLAST of Lcy01g008620 vs. NCBI nr
Match: KAA0051313.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-22
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 6   SSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEM 65
           SS +VA+  ISKVLGPDRGHIR  GFGVT+S  S  SQ+D+ Y KLEEK +KME +M +M
Sbjct: 132 SSKDVANYVISKVLGPDRGHIRAFGFGVTTSNFSLLSQKDDHYAKLEEKCEKMEVEMTQM 191

Query: 66  RSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSPL 106
           R ++SHLLKSQG  S+Q SNATN+ +V+ V TN    SPL
Sbjct: 192 RYLISHLLKSQGNGSDQLSNATNDQVVNNVATNPIGTSPL 231

[Close]

BLAST of Lcy01g008620 vs. NCBI nr
Match: TYK00394.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 6   SSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEM 65
           SS ++ +DAISKVLGPDR HIR  GFGVT S  S  SQ+D+ Y KLEEK +KME +M +M
Sbjct: 289 SSKDMTNDAISKVLGPDRDHIRAFGFGVTISNFSLLSQKDDHYAKLEEKCEKMEVEMTQM 348

Query: 66  RSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSP 105
           RS++SHLLKSQG  S+Q SNATN+ +V+ V TN    SP
Sbjct: 349 RSLISHLLKSQGNGSDQLSNATNDQVVNNVATNPIGTSP 387

[Close]

BLAST of Lcy01g008620 vs. NCBI nr
Match: KAA0025471.1 (uncharacterized protein E6C27_scaffold417G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 6   SSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQMFEM 65
           SS ++ +DAISKVLGPDR HIR  GFGVT S  S  SQ+D+ Y KLEEK +KME +M +M
Sbjct: 692 SSKDMTNDAISKVLGPDRDHIRAFGFGVTISNFSLLSQKDDHYAKLEEKCEKMEVEMTQM 751

Query: 66  RSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSP 105
           RS++SHLLKSQG  S+Q SNATN+ +V+ V TN    SP
Sbjct: 752 RSLISHLLKSQGNGSDQLSNATNDQVVNNVATNPIGTSP 790

[Close]

BLAST of Lcy01g008620 vs. NCBI nr
Match: KAA0060327.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-19
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 3   RTTSSTNVADDAISKVLGPDRGHIRGLGFGVTSSKLSTFSQRDNEYKKLEEKYKKMEEQM 62
           R TSS +VA+DAISKV  PDRG+IR  GF VT+SK S  S++D  Y KLEEK +KME +M
Sbjct: 6   RNTSSKDVANDAISKVPIPDRGYIRAFGFRVTTSKFSLLSKKDGHYAKLEEKCEKMEVEM 65

Query: 63  FEMRSMVSHLLKSQGQTSEQFSNATNEHMVDKVTTNQTEFSP 105
             MRS++SH+LKSQ   S+Q SNA N  +V+ V TN  E SP
Sbjct: 66  SRMRSLISHVLKSQDNGSKQHSNAINNQLVNNVATNPIETSP 107

The following BLAST results are available for this feature:

BLAST of Lcy01g008620 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g008620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEJ8	7.7e-24	63.64	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold543G00...	[more]
A0A5A7U615	3.2e-22	61.00	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002...	[more]
A0A5D3BM96	5.5e-22	60.61	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G0...	[more]
A0A5A7SMK7	5.5e-22	60.61	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V0I6	6.7e-20	57.84	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001...	[more]

BLAST of Lcy01g008620 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21965.1	1.6e-23	63.64	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0051313.1	6.7e-22	61.00	Plant transposase [Cucumis melo var. makuwa]	[more]
TYK00394.1	1.1e-21	60.61	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0025471.1	1.1e-21	60.61	uncharacterized protein E6C27_scaffold417G00730 [Cucumis melo var. makuwa]	[more]
KAA0060327.1	1.4e-19	57.84	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of Lcy01g008620 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g008620.1	Lcy01g008620.1	mRNA