Lcy01g008610 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g008610
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Enzymatic polyprotein
Location	Chr01: 20747709 .. 20747993 (-)
RNA-Seq Expression	Lcy01g008610
Synteny	Lcy01g008610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCAAAAGCATTGGTCCAATCCCCAAAAGGAAAAACCATGTTGATTGAAACAAACATCAACAAATCCTCTGTAAGTGTCCCAAAGATGCTTTCATGGGATAACCTCACAAGAAACCCAAGATGGACAATCGAAAATGCTTTTGTCCCTCAAAAGAAAGAAAATGAACTTTCCCATATCATCGAACATCCAGATGGGAGAGTAGAAATCAAATTTGAGGATGAAACCTCAATTTCCAATGGTCAAAGAAAACATGAACAAAAAAGAATTCATGAGTTCTAG

mRNA sequence

ATGGAACCAAAAGCATTGGTCCAATCCCCAAAAGGAAAAACCATGTTGATTGAAACAAACATCAACAAATCCTCTGTAAGTGTCCCAAAGATGCTTTCATGGGATAACCTCACAAGAAACCCAAGATGGACAATCGAAAATGCTTTTGTCCCTCAAAAGAAAGAAAATGAACTTTCCCATATCATCGAACATCCAGATGGGAGAGTAGAAATCAAATTTGAGGATGAAACCTCAATTTCCAATGGTCAAAGAAAACATGAACAAAAAAGAATTCATGAGTTCTAG

Coding sequence (CDS)

ATGGAACCAAAAGCATTGGTCCAATCCCCAAAAGGAAAAACCATGTTGATTGAAACAAACATCAACAAATCCTCTGTAAGTGTCCCAAAGATGCTTTCATGGGATAACCTCACAAGAAACCCAAGATGGACAATCGAAAATGCTTTTGTCCCTCAAAAGAAAGAAAATGAACTTTCCCATATCATCGAACATCCAGATGGGAGAGTAGAAATCAAATTTGAGGATGAAACCTCAATTTCCAATGGTCAAAGAAAACATGAACAAAAAAGAATTCATGAGTTCTAG

Protein sequence

MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSHIIEHPDGRVEIKFEDETSISNGQRKHEQKRIHEF

Homology

[Close]

BLAST of Lcy01g008610 vs. ExPASy TrEMBL
Match: A0A5A7URX9 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00980 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.2e-12
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E N+ KSS+++P+ L WD LT+NP W ++    P K+ +  + 
Sbjct: 130 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 189

Query: 61  IIEHPDGRVEIKF 74
           IIE PDG VE++F
Sbjct: 190 IIEFPDGNVEVQF 202

[Close]

BLAST of Lcy01g008610 vs. ExPASy TrEMBL
Match: A0A5A7UA27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00510 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-12
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E NI KSS+++P+ L+WD LT+NP W ++    P K+ +  + 
Sbjct: 130 LSPKALGVSPKGYTMLMEVNIEKSSMTIPRNLNWDELTKNPVWKLQGETAPIKRSSTEAS 189

Query: 61  IIEHPDGRVEIKF 74
           I E PDG VE++F
Sbjct: 190 ITEFPDGNVEVQF 202

[Close]

BLAST of Lcy01g008610 vs. ExPASy TrEMBL
Match: A0A5D3BG41 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00200 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.3e-12
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E N+ KSS+++P+ L WD LT+NP W ++    P K+ +  + 
Sbjct: 224 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGEIAPIKRSSTEAS 283

Query: 61  IIEHPDGRVEIKF 74
           I E PDG VE++F
Sbjct: 284 ITEFPDGNVEVQF 296

[Close]

BLAST of Lcy01g008610 vs. ExPASy TrEMBL
Match: A0A5A7UF59 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00970 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.3e-12
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E N+ KSS+++P+ L WD LT+NP W ++    P K+ +  + 
Sbjct: 224 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGEIAPIKRSSTEAS 283

Query: 61  IIEHPDGRVEIKF 74
           I E PDG VE++F
Sbjct: 284 ITEFPDGNVEVQF 296

[Close]

BLAST of Lcy01g008610 vs. ExPASy TrEMBL
Match: A0A5D3C4I7 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00050 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E N+ KSS+++P+ L WD LT+NP W ++    P K+ +  + 
Sbjct: 224 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 61  IIEHPDGRVEIKF 74
           I E PDG VE++F
Sbjct: 284 ITEFPDGNVEVQF 296

[Close]

BLAST of Lcy01g008610 vs. NCBI nr
Match: KAA0057417.1 (Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 8.6e-12
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E N+ KSS+++P+ L WD LT+NP W ++    P K+ +  + 
Sbjct: 130 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 189

Query: 61  IIEHPDGRVEIKF 74
           IIE PDG VE++F
Sbjct: 190 IIEFPDGNVEVQF 202

[Close]

BLAST of Lcy01g008610 vs. NCBI nr
Match: KAA0050445.1 (hypothetical protein E6C27_scaffold175G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E NI KSS+++P+ L+WD LT+NP W ++    P K+ +  + 
Sbjct: 130 LSPKALGVSPKGYTMLMEVNIEKSSMTIPRNLNWDELTKNPVWKLQGETAPIKRSSTEAS 189

Query: 61  IIEHPDGRVEIKF 74
           I E PDG VE++F
Sbjct: 190 ITEFPDGNVEVQF 202

[Close]

BLAST of Lcy01g008610 vs. NCBI nr
Match: TYJ98087.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E N+ KSS+++P+ L WD LT+NP W ++    P K+ +  + 
Sbjct: 224 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGEIAPIKRSSTEAS 283

Query: 61  IIEHPDGRVEIKF 74
           I E PDG VE++F
Sbjct: 284 ITEFPDGNVEVQF 296

[Close]

BLAST of Lcy01g008610 vs. NCBI nr
Match: KAA0052109.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E N+ KSS+++P+ L WD LT+NP W ++    P K+ +  + 
Sbjct: 224 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGEIAPIKRSSTEAS 283

Query: 61  IIEHPDGRVEIKF 74
           I E PDG VE++F
Sbjct: 284 ITEFPDGNVEVQF 296

[Close]

BLAST of Lcy01g008610 vs. NCBI nr
Match: KAA0041674.1 (movement protein [Cucumis melo var. makuwa] >TYK06295.1 movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-11
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1   MEPKALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPQKKENELSH 60
           + PKAL  SPKG TML+E N+ KSS+++P+ L WD LT+NP W ++    P K+ +  + 
Sbjct: 224 LSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGETTPIKRSSTEAS 283

Query: 61  IIEHPDGRVEIKF 74
           I E PDG VE++F
Sbjct: 284 ITEFPDGNVEVQF 296

The following BLAST results are available for this feature:

BLAST of Lcy01g008610 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g008610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URX9	4.2e-12	49.32	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21...	[more]
A0A5A7UA27	7.1e-12	49.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BG41	9.3e-12	47.95	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold56...	[more]
A0A5A7UF59	9.3e-12	47.95	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57...	[more]
A0A5D3C4I7	1.6e-11	47.95	Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G000...	[more]

BLAST of Lcy01g008610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057417.1	8.6e-12	49.32	Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprote...	[more]
KAA0050445.1	1.5e-11	49.32	hypothetical protein E6C27_scaffold175G00510 [Cucumis melo var. makuwa]	[more]
TYJ98087.1	1.9e-11	47.95	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0052109.1	1.9e-11	47.95	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0041674.1	3.3e-11	47.95	movement protein [Cucumis melo var. makuwa] >TYK06295.1 movement protein [Cucumi...	[more]

BLAST of Lcy01g008610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g008610.1	Lcy01g008610.1	mRNA