Lcy01g006920 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGTTCACTTCTCTCACAATGATGTGCTAGTAGTAACAATAGAAGTAGCAAATTATCAAGTCGAACAAATATTTATTAATCAGGTTACTCAACATCAGTCAGCCATTAGGTCGATTAGCTAACTTTTTTGCCTGTGATAGAATGTGATATGTCTCGCGTATGATTTTTACTTTTCGACTCTGCCCAAAATATTAATATCTTGATTTTAAATTTCAAAATTTACAACTTGAATCCCTAAGGCTTTTTTAGTTGATAATCTTTTAGTTTTTTTTTAATATAAATTATAGGTTAAATTAAAAGTTTAATCTCTGAACTTGATGCTTGCATTTATTTGGTCCTAGAACTTTAAAATGTTTCTAATAAGTTGTTGAACTTTTAATTTTGTGTCCAATAGTTCTTGGACCTTAAAAAGTGTTCACTGTGTTTGGATTGAGGAGTTGGGTGGAGTTAGGTTGGGGTGGAGTTAATAACTTCACCCAACTCCTTGTTTGACATATTTTAAACCCGAATGTAGGGTCTACAAACTTATTAACTCTTATTTCAACTTTCCTATTGCAGATTCCACATTTATTAACTTCAACTCCAACTTCAAATTATGGCTCCCCTCACGAGGAGTTCACTCCAAAGAGAGGATTGAGACAGGGAGACCCTTTATCCCTTTACCTTTTTCTTTTATGTGCAGATGGCTTATTGGCTATGCTCAATAAGGAGAAATCCTTGGGGAAGGTAAAAGGCCTAAAGATTAGTAACCATTGTCCATCTCTAACTCATCTCTTTTTTTTTTTTGCAAATGGCGCCTTCATCATGGGTCAAGCCATGGAGAAAGAGTGTGAAACTGTCAAGAGAGTGCTCAAAATTTACGAAGAAGCAACCGGCCAAATGATAAACTATGAAAAATCATCTTTTATGGTCAGCAAAAATATCAACAAAGAGAAAGCCTCAAATCTCAGCAAAGTTCTTGGAATAGCTAATTCTGAGAGTCTTGGGTACTACTTGGGGATATCGTCTCTGAATGGTAGAAACAATAACAGAATCTTCAATAAAGTAAAGGACCGTGTCTGGAAGGCGCTCAAAAAATGGAAGGAATCTCTTTTCTCGACAGGGGGAAAGGAAATCTTGATAAAAGCTATAGTGCAAGCTATCCCCAACTACACCATGAGTTGCTTCAGATTACCTTCCAATCTTTGCTCTGAGATAAAAAAGATGTGTAACTTCTGGTGGGGATCCTCAAAAGAAAAGAAAAGAGCTCATTGGATGAGCTCGGATAAAATGTGTGCTAGTAAGGATCTAGGGGGATTGGGTTTTAGAGACCTAAATCTTTTTAACCAAGCCATGCTAGCAAAGATTAGTTGGCGTATAATTAGATCCCCAAACATCAAAAATTCTGCGGGGAAAGATACTATAAAGGAGGAGATTTCTTTAATACGCAATTGGGTCATAATCCTTCTCTAA ATGAAAGTTCACTTCTCTCACAATGATGTGCTAGTAGTAACAATAGAAGTAGCAAATTATCAAGTCGAACAAATATTTATTAATCAGATTCCACATTTATTAACTTCAACTCCAACTTCAAATTATGGCTCCCCTCACGAGGAGTTCACTCCAAAGAGAGGATTGAGACAGGGAGACCCTTTATCCCTTTACCTTTTTCTTTTATGTGCAGATGGCTTATTGGCTATGCTCAATAAGGAGAAATCCTTGGGGAAGGTAAAAGGCCTAAAGATTAGTAACCATTGTCCATCTCTAACTCATCTCTTTTTTTTTTTTGCAAATGGCGCCTTCATCATGGGTCAAGCCATGGAGAAAGAGTGTGAAACTGTCAAGAGAGTGCTCAAAATTTACGAAGAAGCAACCGGCCAAATGATAAACTATGAAAAATCATCTTTTATGGTCAGCAAAAATATCAACAAAGAGAAAGCCTCAAATCTCAGCAAAGTTCTTGGAATAGCTAATTCTGAGAGTCTTGGGTACTACTTGGGGATATCGTCTCTGAATGGTAGAAACAATAACAGAATCTTCAATAAAGTAAAGGACCGTGTCTGGAAGGCGCTCAAAAAATGGAAGGAATCTCTTTTCTCGACAGGGGGAAAGGAAATCTTGATAAAAGCTATAGTGCAAGCTATCCCCAACTACACCATGAGTTGCTTCAGATTACCTTCCAATCTTTGCTCTGAGATAAAAAAGATGTGTAACTTCTGGTGGGGATCCTCAAAAGAAAAGAAAAGAGCTCATTGGATGAGCTCGGATAAAATGTGTGCTAGTAAGGATCTAGGGGGATTGGGTTTTAGAGACCTAAATCTTTTTAACCAAGCCATGCTAGCAAAGATTAGTTGGCGTATAATTAGATCCCCAAACATCAAAAATTCTGCGGGGAAAGATACTATAAAGGAGGAGATTTCTTTAATACGCAATTGGGTCATAATCCTTCTCTAA ATGAAAGTTCACTTCTCTCACAATGATGTGCTAGTAGTAACAATAGAAGTAGCAAATTATCAAGTCGAACAAATATTTATTAATCAGATTCCACATTTATTAACTTCAACTCCAACTTCAAATTATGGCTCCCCTCACGAGGAGTTCACTCCAAAGAGAGGATTGAGACAGGGAGACCCTTTATCCCTTTACCTTTTTCTTTTATGTGCAGATGGCTTATTGGCTATGCTCAATAAGGAGAAATCCTTGGGGAAGGTAAAAGGCCTAAAGATTAGTAACCATTGTCCATCTCTAACTCATCTCTTTTTTTTTTTTGCAAATGGCGCCTTCATCATGGGTCAAGCCATGGAGAAAGAGTGTGAAACTGTCAAGAGAGTGCTCAAAATTTACGAAGAAGCAACCGGCCAAATGATAAACTATGAAAAATCATCTTTTATGGTCAGCAAAAATATCAACAAAGAGAAAGCCTCAAATCTCAGCAAAGTTCTTGGAATAGCTAATTCTGAGAGTCTTGGGTACTACTTGGGGATATCGTCTCTGAATGGTAGAAACAATAACAGAATCTTCAATAAAGTAAAGGACCGTGTCTGGAAGGCGCTCAAAAAATGGAAGGAATCTCTTTTCTCGACAGGGGGAAAGGAAATCTTGATAAAAGCTATAGTGCAAGCTATCCCCAACTACACCATGAGTTGCTTCAGATTACCTTCCAATCTTTGCTCTGAGATAAAAAAGATGTGTAACTTCTGGTGGGGATCCTCAAAAGAAAAGAAAAGAGCTCATTGGATGAGCTCGGATAAAATGTGTGCTAGTAAGGATCTAGGGGGATTGGGTTTTAGAGACCTAAATCTTTTTAACCAAGCCATGCTAGCAAAGATTAGTTGGCGTATAATTAGATCCCCAAACATCAAAAATTCTGCGGGGAAAGATACTATAAAGGAGGAGATTTCTTTAATACGCAATTGGGTCATAATCCTTCTCTAA MKVHFSHNDVLVVTIEVANYQVEQIFINQIPHLLTSTPTSNYGSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLFFFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMVSKNINKEKASNLSKVLGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQAIPNYTMSCFRLPSNLCSEIKKMCNFWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDLNLFNQAMLAKISWRIIRSPNIKNSAGKDTIKEEISLIRNWVIILL Homology
BLAST of Lcy01g006920 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.9e-16 Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 0
BLAST of Lcy01g006920 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 5.5e-16 Identity = 40/123 (32.52%), Postives = 71/123 (57.72%), Query Frame = 0
BLAST of Lcy01g006920 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2) HSP 1 Score: 69.3 bits (168), Expect = 9.0e-11 Identity = 67/278 (24.10%), Postives = 130/278 (46.76%), Query Frame = 0
BLAST of Lcy01g006920 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 2.6e-10 Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0
BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2N9GTU7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30994 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 3.3e-64 Identity = 125/260 (48.08%), Postives = 171/260 (65.77%), Query Frame = 0
BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2N9HR12 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42075 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 3.3e-64 Identity = 125/260 (48.08%), Postives = 171/260 (65.77%), Query Frame = 0
BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2K3N033 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g019590 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 2.1e-63 Identity = 113/259 (43.63%), Postives = 172/259 (66.41%), Query Frame = 0
BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2N9IMU5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54064 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 6.2e-63 Identity = 122/274 (44.53%), Postives = 176/274 (64.23%), Query Frame = 0
BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2K3PS48 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g014865 PE=4 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62 Identity = 121/294 (41.16%), Postives = 187/294 (63.61%), Query Frame = 0
BLAST of Lcy01g006920 vs. NCBI nr
Match: PNX96384.1 (ribonuclease H, partial [Trifolium pratense]) HSP 1 Score: 252.7 bits (644), Expect = 4.4e-63 Identity = 113/259 (43.63%), Postives = 172/259 (66.41%), Query Frame = 0
BLAST of Lcy01g006920 vs. NCBI nr
Match: XP_023871998.1 (uncharacterized protein LOC111984613 [Quercus suber]) HSP 1 Score: 251.9 bits (642), Expect = 7.5e-63 Identity = 119/260 (45.77%), Postives = 171/260 (65.77%), Query Frame = 0
BLAST of Lcy01g006920 vs. NCBI nr
Match: PNY18108.1 (ribonuclease H, partial [Trifolium pratense]) HSP 1 Score: 250.4 bits (638), Expect = 2.2e-62 Identity = 121/294 (41.16%), Postives = 187/294 (63.61%), Query Frame = 0
BLAST of Lcy01g006920 vs. NCBI nr
Match: XP_028062862.1 (uncharacterized protein LOC114266180 [Camellia sinensis]) HSP 1 Score: 250.0 bits (637), Expect = 2.8e-62 Identity = 125/281 (44.48%), Postives = 176/281 (62.63%), Query Frame = 0
BLAST of Lcy01g006920 vs. NCBI nr
Match: XP_027174193.1 (uncharacterized protein LOC113773779 [Coffea eugenioides]) HSP 1 Score: 249.6 bits (636), Expect = 3.7e-62 Identity = 123/270 (45.56%), Postives = 178/270 (65.93%), Query Frame = 0
BLAST of Lcy01g006920 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 88.2 bits (217), Expect = 1.3e-17 Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 0
BLAST of Lcy01g006920 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 80.1 bits (196), Expect = 3.6e-15 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 0
BLAST of Lcy01g006920 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) ) HSP 1 Score: 67.8 bits (164), Expect = 1.9e-11 Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0
BLAST of Lcy01g006920 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 64.7 bits (156), Expect = 1.6e-10 Identity = 39/122 (31.97%), Postives = 59/122 (48.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
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