Lcy01g006920 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g006920
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr01: 11132741 .. 11134196 (+)
RNA-Seq ExpressionLcy01g006920
SyntenyLcy01g006920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTCACTTCTCTCACAATGATGTGCTAGTAGTAACAATAGAAGTAGCAAATTATCAAGTCGAACAAATATTTATTAATCAGGTTACTCAACATCAGTCAGCCATTAGGTCGATTAGCTAACTTTTTTGCCTGTGATAGAATGTGATATGTCTCGCGTATGATTTTTACTTTTCGACTCTGCCCAAAATATTAATATCTTGATTTTAAATTTCAAAATTTACAACTTGAATCCCTAAGGCTTTTTTAGTTGATAATCTTTTAGTTTTTTTTTAATATAAATTATAGGTTAAATTAAAAGTTTAATCTCTGAACTTGATGCTTGCATTTATTTGGTCCTAGAACTTTAAAATGTTTCTAATAAGTTGTTGAACTTTTAATTTTGTGTCCAATAGTTCTTGGACCTTAAAAAGTGTTCACTGTGTTTGGATTGAGGAGTTGGGTGGAGTTAGGTTGGGGTGGAGTTAATAACTTCACCCAACTCCTTGTTTGACATATTTTAAACCCGAATGTAGGGTCTACAAACTTATTAACTCTTATTTCAACTTTCCTATTGCAGATTCCACATTTATTAACTTCAACTCCAACTTCAAATTATGGCTCCCCTCACGAGGAGTTCACTCCAAAGAGAGGATTGAGACAGGGAGACCCTTTATCCCTTTACCTTTTTCTTTTATGTGCAGATGGCTTATTGGCTATGCTCAATAAGGAGAAATCCTTGGGGAAGGTAAAAGGCCTAAAGATTAGTAACCATTGTCCATCTCTAACTCATCTCTTTTTTTTTTTTGCAAATGGCGCCTTCATCATGGGTCAAGCCATGGAGAAAGAGTGTGAAACTGTCAAGAGAGTGCTCAAAATTTACGAAGAAGCAACCGGCCAAATGATAAACTATGAAAAATCATCTTTTATGGTCAGCAAAAATATCAACAAAGAGAAAGCCTCAAATCTCAGCAAAGTTCTTGGAATAGCTAATTCTGAGAGTCTTGGGTACTACTTGGGGATATCGTCTCTGAATGGTAGAAACAATAACAGAATCTTCAATAAAGTAAAGGACCGTGTCTGGAAGGCGCTCAAAAAATGGAAGGAATCTCTTTTCTCGACAGGGGGAAAGGAAATCTTGATAAAAGCTATAGTGCAAGCTATCCCCAACTACACCATGAGTTGCTTCAGATTACCTTCCAATCTTTGCTCTGAGATAAAAAAGATGTGTAACTTCTGGTGGGGATCCTCAAAAGAAAAGAAAAGAGCTCATTGGATGAGCTCGGATAAAATGTGTGCTAGTAAGGATCTAGGGGGATTGGGTTTTAGAGACCTAAATCTTTTTAACCAAGCCATGCTAGCAAAGATTAGTTGGCGTATAATTAGATCCCCAAACATCAAAAATTCTGCGGGGAAAGATACTATAAAGGAGGAGATTTCTTTAATACGCAATTGGGTCATAATCCTTCTCTAA

mRNA sequence

ATGAAAGTTCACTTCTCTCACAATGATGTGCTAGTAGTAACAATAGAAGTAGCAAATTATCAAGTCGAACAAATATTTATTAATCAGATTCCACATTTATTAACTTCAACTCCAACTTCAAATTATGGCTCCCCTCACGAGGAGTTCACTCCAAAGAGAGGATTGAGACAGGGAGACCCTTTATCCCTTTACCTTTTTCTTTTATGTGCAGATGGCTTATTGGCTATGCTCAATAAGGAGAAATCCTTGGGGAAGGTAAAAGGCCTAAAGATTAGTAACCATTGTCCATCTCTAACTCATCTCTTTTTTTTTTTTGCAAATGGCGCCTTCATCATGGGTCAAGCCATGGAGAAAGAGTGTGAAACTGTCAAGAGAGTGCTCAAAATTTACGAAGAAGCAACCGGCCAAATGATAAACTATGAAAAATCATCTTTTATGGTCAGCAAAAATATCAACAAAGAGAAAGCCTCAAATCTCAGCAAAGTTCTTGGAATAGCTAATTCTGAGAGTCTTGGGTACTACTTGGGGATATCGTCTCTGAATGGTAGAAACAATAACAGAATCTTCAATAAAGTAAAGGACCGTGTCTGGAAGGCGCTCAAAAAATGGAAGGAATCTCTTTTCTCGACAGGGGGAAAGGAAATCTTGATAAAAGCTATAGTGCAAGCTATCCCCAACTACACCATGAGTTGCTTCAGATTACCTTCCAATCTTTGCTCTGAGATAAAAAAGATGTGTAACTTCTGGTGGGGATCCTCAAAAGAAAAGAAAAGAGCTCATTGGATGAGCTCGGATAAAATGTGTGCTAGTAAGGATCTAGGGGGATTGGGTTTTAGAGACCTAAATCTTTTTAACCAAGCCATGCTAGCAAAGATTAGTTGGCGTATAATTAGATCCCCAAACATCAAAAATTCTGCGGGGAAAGATACTATAAAGGAGGAGATTTCTTTAATACGCAATTGGGTCATAATCCTTCTCTAA

Coding sequence (CDS)

ATGAAAGTTCACTTCTCTCACAATGATGTGCTAGTAGTAACAATAGAAGTAGCAAATTATCAAGTCGAACAAATATTTATTAATCAGATTCCACATTTATTAACTTCAACTCCAACTTCAAATTATGGCTCCCCTCACGAGGAGTTCACTCCAAAGAGAGGATTGAGACAGGGAGACCCTTTATCCCTTTACCTTTTTCTTTTATGTGCAGATGGCTTATTGGCTATGCTCAATAAGGAGAAATCCTTGGGGAAGGTAAAAGGCCTAAAGATTAGTAACCATTGTCCATCTCTAACTCATCTCTTTTTTTTTTTTGCAAATGGCGCCTTCATCATGGGTCAAGCCATGGAGAAAGAGTGTGAAACTGTCAAGAGAGTGCTCAAAATTTACGAAGAAGCAACCGGCCAAATGATAAACTATGAAAAATCATCTTTTATGGTCAGCAAAAATATCAACAAAGAGAAAGCCTCAAATCTCAGCAAAGTTCTTGGAATAGCTAATTCTGAGAGTCTTGGGTACTACTTGGGGATATCGTCTCTGAATGGTAGAAACAATAACAGAATCTTCAATAAAGTAAAGGACCGTGTCTGGAAGGCGCTCAAAAAATGGAAGGAATCTCTTTTCTCGACAGGGGGAAAGGAAATCTTGATAAAAGCTATAGTGCAAGCTATCCCCAACTACACCATGAGTTGCTTCAGATTACCTTCCAATCTTTGCTCTGAGATAAAAAAGATGTGTAACTTCTGGTGGGGATCCTCAAAAGAAAAGAAAAGAGCTCATTGGATGAGCTCGGATAAAATGTGTGCTAGTAAGGATCTAGGGGGATTGGGTTTTAGAGACCTAAATCTTTTTAACCAAGCCATGCTAGCAAAGATTAGTTGGCGTATAATTAGATCCCCAAACATCAAAAATTCTGCGGGGAAAGATACTATAAAGGAGGAGATTTCTTTAATACGCAATTGGGTCATAATCCTTCTCTAA

Protein sequence

MKVHFSHNDVLVVTIEVANYQVEQIFINQIPHLLTSTPTSNYGSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLFFFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMVSKNINKEKASNLSKVLGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQAIPNYTMSCFRLPSNLCSEIKKMCNFWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDLNLFNQAMLAKISWRIIRSPNIKNSAGKDTIKEEISLIRNWVIILL
Homology
BLAST of Lcy01g006920 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-16
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 223 AIPNYTMSCFRLPSNLCSEI-KKMCNFWWGSSKEKKRAHWMSSDKMCASK-DLGGLGFRD 282
           A+P Y MSCFRL   LC ++   M  FWW S + K++  W++  K+C SK D GGLGFRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 283 LNLFNQAMLAKISWRIIRSPN 302
           L  FNQA+LAK S+RII  P+
Sbjct: 62  LGWFNQALLAKQSFRIIHQPH 82

BLAST of Lcy01g006920 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.5e-16
Identity = 40/123 (32.52%), Postives = 71/123 (57.72%), Query Frame = 0

Query: 180 LNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQAIPNYTMSCFRLPSNLC 239
           L  R N   F ++ +RV   +  W+E   S  G+  L KA++ ++P ++MS   LP ++ 
Sbjct: 4   LQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSIL 63

Query: 240 SEIKKMC-NFWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDLNLFNQAMLAKISWRIIR 299
           + + ++   F WGS+ EKK+ H +   K+C+ K  GGLG R     N+A+++K+ WR+++
Sbjct: 64  NRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQ 123

Query: 300 SPN 302
             N
Sbjct: 124 EKN 126

BLAST of Lcy01g006920 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 9.0e-11
Identity = 67/278 (24.10%), Postives = 130/278 (46.76%), Query Frame = 0

Query: 26  FINQIPHLLTSTPTSNY---GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKS 85
           ++N I   + S P +N    G   E    K G RQG PLS YLF +  + L   + ++K 
Sbjct: 633 YLNMI-KAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQK- 692

Query: 86  LGKVKGLKISNHCPSLTHLFFFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEK 145
             ++KG++I      ++ L    A+   +     +     +  ++  + E  G  IN  K
Sbjct: 693 --EIKGIQIGKEEVKISLL----ADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNK 752

Query: 146 S-SFMVSKNINKEKASNLSKVLGIANSESLGYYLGISSLNGRNN--NRIFNKVKDRVWKA 205
           S +F+ +KN   EK    +    I  +     YLG++      +  ++ F  +K  + + 
Sbjct: 753 SMAFLYTKNKQAEKEIRETTPFSIVTNNI--KYLGVTLTKEVKDLYDKNFKSLKKEIKED 812

Query: 206 LKKWKESLFSTGGKEILIKAIV--QAIPNYTMSCFRLPSNLCSEIK-KMCNFWWGSSKEK 265
           L++WK+   S  G+  ++K  +  +AI  +     ++P+   +E++  +C F W ++K+ 
Sbjct: 813 LRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVW-NNKKP 872

Query: 266 KRAHWMSSDKMCASKDLGGLGFRDLNLFNQAMLAKISW 295
           + A  +  DK    +  GG+   DL L+ +A++ K +W
Sbjct: 873 RIAKSLLKDK----RTSGGITMPDLKLYYRAIVIKTAW 895

BLAST of Lcy01g006920 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-10
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 43  GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLF 102
           G+P    TP RGLRQGDPLS YLF+LC + L  +  + +  G++ G+++SN+ P + HL 
Sbjct: 16  GAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLL 75

Query: 103 F 104
           F
Sbjct: 76  F 76

BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2N9GTU7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30994 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.3e-64
Identity = 125/260 (48.08%), Postives = 171/260 (65.77%), Query Frame = 0

Query: 43  GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLF 102
           GSPH    P RGLRQGDPLS YLFL+CA+GL A+L K +    ++G+ I    P ++HL 
Sbjct: 356 GSPHGYIKPSRGLRQGDPLSPYLFLICAEGLSALLRKMEREKFMRGIAICRGGPRISHL- 415

Query: 103 FFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMVSKNINKEKASNLSKV 162
            FFA+ + I  +A   EC T+  VL +YE A+GQ IN  K++   SKN      S++  +
Sbjct: 416 -FFADDSIIFCRASMHECGTLHHVLALYERASGQQINKAKTALFFSKNTPSSTRSSILTM 475

Query: 163 LGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQ 222
            G ++S     YLG+  + GR+  R FN++KDR+WK L+ WKE L S  G+EILIKA++Q
Sbjct: 476 FGTSSSTQFEKYLGLPPIMGRSKRRAFNEIKDRIWKRLQGWKEKLLSQAGREILIKAVIQ 535

Query: 223 AIPNYTMSCFRLPSNLCSEIKKMCN-FWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDL 282
           AIP+Y M CFR P++LC EI  M N FWWG   + ++ HW++  K+  SK  GG+GFRDL
Sbjct: 536 AIPSYAMCCFRFPASLCDEICSMANRFWWGQRGDARKIHWINKAKLIKSKMDGGMGFRDL 595

Query: 283 NLFNQAMLAKISWRIIRSPN 302
            LFN+A+LAK  WRII+ P+
Sbjct: 596 QLFNKALLAKQGWRIIQEPH 613

BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2N9HR12 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42075 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.3e-64
Identity = 125/260 (48.08%), Postives = 171/260 (65.77%), Query Frame = 0

Query: 43  GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLF 102
           GSPH    P RGLRQGDPLS YLFL+CA+GL A+L K +    ++G+ I    P ++HL 
Sbjct: 578 GSPHGYIKPSRGLRQGDPLSPYLFLICAEGLSALLRKMEREKFMRGIAICRGGPRISHL- 637

Query: 103 FFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMVSKNINKEKASNLSKV 162
            FFA+ + I  +A   EC T+  VL +YE A+GQ IN  K++   SKN      S++  +
Sbjct: 638 -FFADDSIIFCRASMHECGTLHHVLALYERASGQQINKAKTALFFSKNTPSSTRSSILTM 697

Query: 163 LGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQ 222
            G ++S     YLG+  + GR+  R FN++KDR+WK L+ WKE L S  G+EILIKA++Q
Sbjct: 698 FGTSSSTQFEKYLGLPPIMGRSKRRAFNEIKDRIWKRLQGWKEKLLSQAGREILIKAVIQ 757

Query: 223 AIPNYTMSCFRLPSNLCSEIKKMCN-FWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDL 282
           AIP+Y M CFR P++LC EI  M N FWWG   + ++ HW++  K+  SK  GG+GFRDL
Sbjct: 758 AIPSYAMCCFRFPASLCDEICSMANRFWWGQRGDARKIHWINKAKLIKSKMDGGMGFRDL 817

Query: 283 NLFNQAMLAKISWRIIRSPN 302
            LFN+A+LAK  WRII+ P+
Sbjct: 818 QLFNKALLAKQGWRIIQEPH 835

BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2K3N033 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g019590 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.1e-63
Identity = 113/259 (43.63%), Postives = 172/259 (66.41%), Query Frame = 0

Query: 43  GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLF 102
           G P  +F P+RGLRQGDPLS YLF++CAD L  +++K +    + G+KIS   P ++HL 
Sbjct: 628 GYPSRQFYPQRGLRQGDPLSPYLFIICADVLSGLISKAQQENLIHGIKISQGAPEVSHL- 687

Query: 103 FFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMVSKNINKEKASNLSKV 162
            FFA+ + I  +A +KE  T+  ++++Y+ A+GQ++N  KS  + SK +  E   +++ +
Sbjct: 688 -FFADDSLIFCRANKKEVSTINNIIQVYQNASGQLVNLAKSEMVFSKGVTTETKKDVTTI 747

Query: 163 LGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQ 222
           L +   E    YLG+  + GR+  +IFN +K+++W+ LK WKE   S  G+  LIKA+ Q
Sbjct: 748 LPMKTPEHFSKYLGMPIVYGRSKKQIFNHIKEKIWQKLKGWKEKNLSFAGRSTLIKAVAQ 807

Query: 223 AIPNYTMSCFRLPSNLCSEIKKM-CNFWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDL 282
           AIP Y MSCF +P  +C +++KM CNFWWGS+ + ++ HW+    +C  K+ GGLGFRDL
Sbjct: 808 AIPTYLMSCFLIPKGICDQLEKMICNFWWGSTTDHRKMHWVKWSNICTQKNNGGLGFRDL 867

Query: 283 NLFNQAMLAKISWRIIRSP 301
             FN+A+LAK SWR+I +P
Sbjct: 868 RAFNEALLAKQSWRLITNP 884

BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2N9IMU5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54064 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 6.2e-63
Identity = 122/274 (44.53%), Postives = 176/274 (64.23%), Query Frame = 0

Query: 33   LLTSTPTSNY-----GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVK 92
            ++T   T++Y     G+P+    P RGLRQGDPLS YLFLLCA+GL A++ K +    ++
Sbjct: 965  IMTCVSTTSYAVMVNGAPYGYIKPSRGLRQGDPLSPYLFLLCAEGLSALIRKAEREKTIR 1024

Query: 93   GLKISNHCPSLTHLFFFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMV 152
            G+ I    P L+HL  FFA+ + I  +A   + E +  +L +YE A+GQ IN EK++F  
Sbjct: 1025 GIAICRRGPRLSHL--FFADDSIIFCRASRHDGEVIHSILNLYERASGQKINEEKTAFFF 1084

Query: 153  SKNINKEKASNLSKVLGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESL 212
            SKN      S +  +   + S     YLG+  + GR+  R FN++KDR+WK L+ WKE+L
Sbjct: 1085 SKNTPNSVQSEIFTMFRSSPSTQFEKYLGLPPILGRSKKRAFNEIKDRIWKKLQGWKENL 1144

Query: 213  FSTGGKEILIKAIVQAIPNYTMSCFRLPSNLCSEIKKMCN-FWWGSSKEKKRAHWMSSDK 272
             S  G+E+LIKA+VQAIPNY MSCF+LP+ LC +I  M N FWWG    +++ HW++  K
Sbjct: 1145 LSQAGREVLIKAVVQAIPNYAMSCFKLPAGLCDDICSMANRFWWGQRNGERKIHWVNKAK 1204

Query: 273  MCASKDLGGLGFRDLNLFNQAMLAKISWRIIRSP 301
            +   K  GG+GFRDL+LFN+A+LA+  WR++  P
Sbjct: 1205 LLRPKQEGGMGFRDLHLFNKALLARQGWRLLHHP 1236

BLAST of Lcy01g006920 vs. ExPASy TrEMBL
Match: A0A2K3PS48 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g014865 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 121/294 (41.16%), Postives = 187/294 (63.61%), Query Frame = 0

Query: 11   LVVTIEVANYQVEQIFINQIPHLLTSTPTSNY--GSPHEEFTPKRGLRQGDPLSLYLFLL 70
            L  T+E  N+  +   IN I   +T+   S    G P + F PKRGLRQGDPLS YLF++
Sbjct: 986  LYATLEAMNFPKK--LINTILKCVTTVSFSILINGKPSKVFYPKRGLRQGDPLSPYLFII 1045

Query: 71   CADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLFFFFANGAFIMGQAMEKECETVKRVLK 130
            CAD L A+++K +    + G+K++   P +THL  FFA+ + +  +A E+E   +K ++ 
Sbjct: 1046 CADVLSALISKAQQNKLIHGVKVAPRAPEITHL--FFADDSLMFCRATEEETTNMKTLIT 1105

Query: 131  IYEEATGQMINYEKSSFMVSKNINKEKASNLSKVLGIANSESLGYYLGISSLNGRNNNRI 190
             Y++A+GQ++NY KS  + SK + +    N+ ++L +   +    YLG  +  G++  ++
Sbjct: 1106 TYQQASGQLVNYNKSEIVFSKKVQQSTRVNIQQILPMPMVDHFSKYLGQPTFIGKSKTQV 1165

Query: 191  FNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQAIPNYTMSCFRLPSNLCSEIKKM-CN 250
            FN ++D++WK LK WKE   S  G+ +LIKA+ QAIP Y MSCF LP  LC+ ++ M C 
Sbjct: 1166 FNYIQDKIWKKLKGWKERNLSFAGRGVLIKAVAQAIPTYLMSCFLLPKGLCNHMESMICR 1225

Query: 251  FWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDLNLFNQAMLAKISWRIIRSPN 302
            FWWGS+ ++++ HW+S  K+C  K  GG+GFRDL+ FN+A+LAK  WR+I  P+
Sbjct: 1226 FWWGSNVDQRKIHWVSWKKLCKQKKQGGMGFRDLSAFNEALLAKQGWRLITEPD 1275

BLAST of Lcy01g006920 vs. NCBI nr
Match: PNX96384.1 (ribonuclease H, partial [Trifolium pratense])

HSP 1 Score: 252.7 bits (644), Expect = 4.4e-63
Identity = 113/259 (43.63%), Postives = 172/259 (66.41%), Query Frame = 0

Query: 43  GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLF 102
           G P  +F P+RGLRQGDPLS YLF++CAD L  +++K +    + G+KIS   P ++HL 
Sbjct: 628 GYPSRQFYPQRGLRQGDPLSPYLFIICADVLSGLISKAQQENLIHGIKISQGAPEVSHL- 687

Query: 103 FFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMVSKNINKEKASNLSKV 162
            FFA+ + I  +A +KE  T+  ++++Y+ A+GQ++N  KS  + SK +  E   +++ +
Sbjct: 688 -FFADDSLIFCRANKKEVSTINNIIQVYQNASGQLVNLAKSEMVFSKGVTTETKKDVTTI 747

Query: 163 LGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQ 222
           L +   E    YLG+  + GR+  +IFN +K+++W+ LK WKE   S  G+  LIKA+ Q
Sbjct: 748 LPMKTPEHFSKYLGMPIVYGRSKKQIFNHIKEKIWQKLKGWKEKNLSFAGRSTLIKAVAQ 807

Query: 223 AIPNYTMSCFRLPSNLCSEIKKM-CNFWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDL 282
           AIP Y MSCF +P  +C +++KM CNFWWGS+ + ++ HW+    +C  K+ GGLGFRDL
Sbjct: 808 AIPTYLMSCFLIPKGICDQLEKMICNFWWGSTTDHRKMHWVKWSNICTQKNNGGLGFRDL 867

Query: 283 NLFNQAMLAKISWRIIRSP 301
             FN+A+LAK SWR+I +P
Sbjct: 868 RAFNEALLAKQSWRLITNP 884

BLAST of Lcy01g006920 vs. NCBI nr
Match: XP_023871998.1 (uncharacterized protein LOC111984613 [Quercus suber])

HSP 1 Score: 251.9 bits (642), Expect = 7.5e-63
Identity = 119/260 (45.77%), Postives = 171/260 (65.77%), Query Frame = 0

Query: 43  GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLF 102
           G P    TP RGLRQGDPLS YLFL CA+GL AM ++     +++G+  S   P L+HL 
Sbjct: 629 GVPQGHITPSRGLRQGDPLSPYLFLFCAEGLSAMFHQAVQRRRLRGIAASRSGPKLSHL- 688

Query: 103 FFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMVSKNINKEKASNLSKV 162
            FFA+ + I GQA  +EC  ++R+LK+YE+++GQ +N +K+S   S+N  +E    +  +
Sbjct: 689 -FFADDSLIFGQATHEECAEIRRILKVYEDSSGQQLNKQKTSLYFSRNTAREVQEAIKTL 748

Query: 163 LGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQ 222
            G    +    YLG+ SL GR+    F ++K++V K L  WKE L S  GKE+LIKA+ +
Sbjct: 749 FGAQVIKQHETYLGLPSLVGRSKTNSFAQLKEKVAKKLSGWKEKLLSPAGKEVLIKAVAK 808

Query: 223 AIPNYTMSCFRLPSNLCSEIKKMCN-FWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDL 282
           A+P YTMSCF++P+++C E+  M + FWWG  KE+++  W+S DK+C  KD GG+GFRDL
Sbjct: 809 AVPTYTMSCFKIPNSICDELTSMVSQFWWGQKKEERKMAWLSWDKLCLPKDKGGMGFRDL 868

Query: 283 NLFNQAMLAKISWRIIRSPN 302
             FN+A+LAK  WR+   PN
Sbjct: 869 KAFNRALLAKQGWRLQTHPN 886

BLAST of Lcy01g006920 vs. NCBI nr
Match: PNY18108.1 (ribonuclease H, partial [Trifolium pratense])

HSP 1 Score: 250.4 bits (638), Expect = 2.2e-62
Identity = 121/294 (41.16%), Postives = 187/294 (63.61%), Query Frame = 0

Query: 11   LVVTIEVANYQVEQIFINQIPHLLTSTPTSNY--GSPHEEFTPKRGLRQGDPLSLYLFLL 70
            L  T+E  N+  +   IN I   +T+   S    G P + F PKRGLRQGDPLS YLF++
Sbjct: 986  LYATLEAMNFPKK--LINTILKCVTTVSFSILINGKPSKVFYPKRGLRQGDPLSPYLFII 1045

Query: 71   CADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLFFFFANGAFIMGQAMEKECETVKRVLK 130
            CAD L A+++K +    + G+K++   P +THL  FFA+ + +  +A E+E   +K ++ 
Sbjct: 1046 CADVLSALISKAQQNKLIHGVKVAPRAPEITHL--FFADDSLMFCRATEEETTNMKTLIT 1105

Query: 131  IYEEATGQMINYEKSSFMVSKNINKEKASNLSKVLGIANSESLGYYLGISSLNGRNNNRI 190
             Y++A+GQ++NY KS  + SK + +    N+ ++L +   +    YLG  +  G++  ++
Sbjct: 1106 TYQQASGQLVNYNKSEIVFSKKVQQSTRVNIQQILPMPMVDHFSKYLGQPTFIGKSKTQV 1165

Query: 191  FNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQAIPNYTMSCFRLPSNLCSEIKKM-CN 250
            FN ++D++WK LK WKE   S  G+ +LIKA+ QAIP Y MSCF LP  LC+ ++ M C 
Sbjct: 1166 FNYIQDKIWKKLKGWKERNLSFAGRGVLIKAVAQAIPTYLMSCFLLPKGLCNHMESMICR 1225

Query: 251  FWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDLNLFNQAMLAKISWRIIRSPN 302
            FWWGS+ ++++ HW+S  K+C  K  GG+GFRDL+ FN+A+LAK  WR+I  P+
Sbjct: 1226 FWWGSNVDQRKIHWVSWKKLCKQKKQGGMGFRDLSAFNEALLAKQGWRLITEPD 1275

BLAST of Lcy01g006920 vs. NCBI nr
Match: XP_028062862.1 (uncharacterized protein LOC114266180 [Camellia sinensis])

HSP 1 Score: 250.0 bits (637), Expect = 2.8e-62
Identity = 125/281 (44.48%), Postives = 176/281 (62.63%), Query Frame = 0

Query: 24  QIFINQIPHLLTSTPTSNY--GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEK 83
           Q F++ I + ++S   S    G P + F PKRGLRQGDPLS YLF+LCA+GL +++ + +
Sbjct: 163 QYFVDTILYCISSVSYSVLVNGHPTKTFVPKRGLRQGDPLSPYLFVLCAEGLSSLIKRAE 222

Query: 84  SLGKVKGLKISNHCPSLTHLFFFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYE 143
             GK+ G+ +    P ++H+  FFA+ + + G A  +E   VK +L  YE A+GQ IN E
Sbjct: 223 REGKLTGVAVCRGSPRVSHI--FFADDSLLFGAANPRELSMVKDILGKYEIASGQKINLE 282

Query: 144 KSSFMVSKNINKEKASNLSKVLGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALK 203
           KS+   SKN+  +    L   +G+ N    G YLG+  + GR+   IFN VKDRVWK L 
Sbjct: 283 KSAICFSKNVGMDTQVGLRNAMGVGNLVDSGKYLGLPYIVGRSKRGIFNYVKDRVWKWLN 342

Query: 204 KWKESLFSTGGKEILIKAIVQAIPNYTMSCFRLPSNLCSEIKKMC-NFWWGSSKEKKRAH 263
            WKE   S  G+EILIK++ Q+IP Y MSCF+LP  +C EI  M  N+WWG  + K++ H
Sbjct: 343 GWKEKYLSAAGREILIKSVAQSIPTYIMSCFQLPDMICEEIDSMVRNYWWGERESKRKNH 402

Query: 264 WMSSDKMCASKDLGGLGFRDLNLFNQAMLAKISWRIIRSPN 302
           W +   +C  K LGG+GFR L  FN+A+LAK  WR+I +P+
Sbjct: 403 WKNWRALCDPKWLGGMGFRSLKAFNKALLAKQGWRLISAPD 441

BLAST of Lcy01g006920 vs. NCBI nr
Match: XP_027174193.1 (uncharacterized protein LOC113773779 [Coffea eugenioides])

HSP 1 Score: 249.6 bits (636), Expect = 3.7e-62
Identity = 123/270 (45.56%), Postives = 178/270 (65.93%), Query Frame = 0

Query: 35  TSTPTSNYGSPHEEF-TPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISN 94
           T T + N    H+EF TP RG+RQGDPLS YLFLLC++GL ++L K K   ++ G+KI  
Sbjct: 173 TVTYSFNINGEHKEFVTPSRGIRQGDPLSPYLFLLCSEGLSSLLQKAKIDKELTGIKICR 232

Query: 95  HCPSLTHLFFFFANGAFIMGQAMEKECETVKRVLKIYEEATGQMINYEKSSFMVSKNINK 154
             P++THL  FFA+ + +  +A ++E E +KR+LK+YEEATGQ+IN +KSS + SKN   
Sbjct: 233 KAPTITHL--FFADDSLVFCKANKQEAEKLKRILKVYEEATGQLINMDKSSVLFSKNTLP 292

Query: 155 EKASNLSKVLGIANSESLGYYLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGK 214
              S + + +G       G YLG+  +  R+  ++F  V++ + K LK W+  L S  GK
Sbjct: 293 SVKSEVCQAMGSIKQVEQGKYLGLPMVITRSKEQVFGFVRNSIDKKLKGWRNKLLSQAGK 352

Query: 215 EILIKAIVQAIPNYTMSCFRLPSNLCSEI-KKMCNFWWGSSKEKKRAHWMSSDKMCASKD 274
           EI+IKA+  A+P Y MSCFRL + +C EI  KM ++WWG +  KK+ HW+S  K+ A + 
Sbjct: 353 EIMIKAVAMAMPTYIMSCFRLTNKMCKEISSKMADYWWGDADGKKKLHWISWKKLTAKRS 412

Query: 275 LGGLGFRDLNLFNQAMLAKISWRIIRSPNI 303
            GG+GF+DL LFN+A+LAK  W++I  PN+
Sbjct: 413 NGGMGFKDLKLFNKALLAKQIWKLITQPNL 440

BLAST of Lcy01g006920 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-17
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 223 AIPNYTMSCFRLPSNLCSEI-KKMCNFWWGSSKEKKRAHWMSSDKMCASK-DLGGLGFRD 282
           A+P Y MSCFRL   LC ++   M  FWW S + K++  W++  K+C SK D GGLGFRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 283 LNLFNQAMLAKISWRIIRSPN 302
           L  FNQA+LAK S+RII  P+
Sbjct: 62  LGWFNQALLAKQSFRIIHQPH 82

BLAST of Lcy01g006920 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 3.6e-15
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 223 AIPNYTMSCFRLPSNLCSE-IKKMCNFWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDL 282
           A+P YTM+CF LP  +C + I  + +FWW + +E K  HW + D +   K  GG+GF+D+
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 283 NLFNQAMLAKISWRIIRSP 301
             FN A+L K  WR++  P
Sbjct: 62  EAFNLALLGKQMWRMLSRP 80

BLAST of Lcy01g006920 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-11
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 43  GSPHEEFTPKRGLRQGDPLSLYLFLLCADGLLAMLNKEKSLGKVKGLKISNHCPSLTHLF 102
           G+P    TP RGLRQGDPLS YLF+LC + L  +  + +  G++ G+++SN+ P + HL 
Sbjct: 16  GAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLL 75

Query: 103 F 104
           F
Sbjct: 76  F 76

BLAST of Lcy01g006920 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-10
Identity = 39/122 (31.97%), Postives = 59/122 (48.36%), Query Frame = 0

Query: 174 YLGISSLNGRNNNRIFNKVKDRVWKALKKWKESLFSTGGKEILIKAIVQAIPNYTMSCFR 233
           YLG+  L  +     +  + +++   + KW     S  G+  LI +++ ++ N+ MS FR
Sbjct: 27  YLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 86

Query: 234 LPSNLCSEIKKMCN--FWWGSSKEKKRAHWMSSDKMCASKDLGGLGFRDLNLFNQAMLAK 293
           LPS    EI  +C+   W G     K+A    SD +C  KD GGLG R L   N+     
Sbjct: 87  LPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD-VCTPKDEGGLGIRSLKEANKGSFWS 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P932951.9e-1653.09Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
P0C2F65.5e-1632.52Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
P113699.0e-1124.10LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... [more]
P925552.6e-1045.90Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A2N9GTU73.3e-6448.08Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9HR123.3e-6448.08Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2K3N0332.1e-6343.63Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g019590 PE=4 SV... [more]
A0A2N9IMU56.2e-6344.53Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54064 PE=4 SV=1[more]
A0A2K3PS481.1e-6241.16Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g014865 PE=4 SV... [more]
Match NameE-valueIdentityDescription
PNX96384.14.4e-6343.63ribonuclease H, partial [Trifolium pratense][more]
XP_023871998.17.5e-6345.77uncharacterized protein LOC111984613 [Quercus suber][more]
PNY18108.12.2e-6241.16ribonuclease H, partial [Trifolium pratense][more]
XP_028062862.12.8e-6244.48uncharacterized protein LOC114266180 [Camellia sinensis][more]
XP_027174193.13.7e-6245.56uncharacterized protein LOC113773779 [Coffea eugenioides][more]
Match NameE-valueIdentityDescription
ATMG00310.11.3e-1753.09RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.13.6e-1541.77Ribonuclease H-like superfamily protein [more]
ATMG01250.11.9e-1145.90RNA-directed DNA polymerase (reverse transcriptase) [more]
AT3G24255.11.6e-1031.97RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 17..154
e-value: 7.6E-8
score: 32.1
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 24..303
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 24..303

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g006920.1Lcy01g006920.1mRNA