Lcy01g006550 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g006550
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr01: 10147374 .. 10147604 (-)
RNA-Seq ExpressionLcy01g006550
SyntenyLcy01g006550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTCAGATTTTTGGTAACTCGAATGGTGGCAAATGGCTTCAGAACGGCAAATAAAAGCCCTAAAACATACGCTACGGCGACGGCGCCGAGGATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAGCAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGGTAA

mRNA sequence

ATGGCGCTCAGATTTTTGGTAACTCGAATGGTGGCAAATGGCTTCAGAACGGCAAATAAAAGCCCTAAAACATACGCTACGGCGACGGCGCCGAGGATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAGCAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGGTAA

Coding sequence (CDS)

ATGGCGCTCAGATTTTTGGTAACTCGAATGGTGGCAAATGGCTTCAGAACGGCAAATAAAAGCCCTAAAACATACGCTACGGCGACGGCGCCGAGGATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAGCAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGGTAA

Protein sequence

MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASRVGDFFPVYVAFVILEW
Homology
BLAST of Lcy01g006550 vs. ExPASy TrEMBL
Match: A0A6J1G139 (uncharacterized protein LOC111449717 OS=Cucurbita moschata OX=3662 GN=LOC111449717 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.4e-23
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MA RFL TR+ AN FRT NKSPK+YATAT  RMKSYA AADFSRFDH+YQQQQSKPKASR
Sbjct: 1  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASR 60

Query: 61 VGDFFPVYVAFVIL 75
           GDF PVYVA  ++
Sbjct: 61 AGDFVPVYVAIGLI 74

BLAST of Lcy01g006550 vs. ExPASy TrEMBL
Match: A0A6J1HUK3 (uncharacterized protein LOC111467595 OS=Cucurbita maxima OX=3661 GN=LOC111467595 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MA R+L  R+ AN FRT NKSPK+YATAT  RMKSYA AADFSRFDH YQQQQSK KASR
Sbjct: 1  MAFRYLAARVAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHDYQQQQSKLKASR 60

Query: 61 VGDFFPVYVAFVIL 75
           GDF PVYVA  ++
Sbjct: 61 AGDFVPVYVAIGLI 74

BLAST of Lcy01g006550 vs. ExPASy TrEMBL
Match: A0A5D3DHE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00890 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-19
Identity = 53/70 (75.71%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MALR+LV+RM ANGFRT+NKS +TYATAT PRMKSYA  ADFS FDH     QSKPKASR
Sbjct: 1  MALRYLVSRMAANGFRTSNKSTRTYATATTPRMKSYAPTADFSHFDH-----QSKPKASR 60

Query: 61 VGDFFPVYVA 71
           GDF PVYVA
Sbjct: 61 AGDFVPVYVA 65

BLAST of Lcy01g006550 vs. ExPASy TrEMBL
Match: A0A1S3AZ27 (uncharacterized protein LOC103484107 OS=Cucumis melo OX=3656 GN=LOC103484107 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-19
Identity = 53/70 (75.71%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MALR+LV+RM ANGFRT+NKS +TYATAT PRMKSYA  ADFS FDH     QSKPKASR
Sbjct: 1  MALRYLVSRMAANGFRTSNKSTRTYATATTPRMKSYAPTADFSHFDH-----QSKPKASR 60

Query: 61 VGDFFPVYVA 71
           GDF PVYVA
Sbjct: 61 AGDFVPVYVA 65

BLAST of Lcy01g006550 vs. ExPASy TrEMBL
Match: A0A0A0L610 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183970 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-16
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MALR+LV+RM ANGF+T+  S +TYATAT PRMKSYA  ADFS F H     QSKPKASR
Sbjct: 1  MALRYLVSRMAANGFKTSYGSTRTYATATTPRMKSYAPTADFSHFHH-----QSKPKASR 60

Query: 61 VGDFFPVYVA 71
           GDF PVYVA
Sbjct: 61 AGDFVPVYVA 65

BLAST of Lcy01g006550 vs. NCBI nr
Match: XP_038877441.1 (uncharacterized protein LOC120069725 [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MALR+LVTR  ANGFRTANKSP+TY TATAP MKSYA AADFSRFDHH++QQQSKPKASR
Sbjct: 1  MALRYLVTRTAANGFRTANKSPRTYTTATAPWMKSYAPAADFSRFDHHHRQQQSKPKASR 60

Query: 61 VGDFFPVYVA 71
           GDF PVYVA
Sbjct: 61 AGDFVPVYVA 70

BLAST of Lcy01g006550 vs. NCBI nr
Match: XP_022945500.1 (uncharacterized protein LOC111449717 [Cucurbita moschata] >KAG6574202.1 hypothetical protein SDJN03_28089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013263.1 hypothetical protein SDJN02_26021, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MA RFL TR+ AN FRT NKSPK+YATAT  RMKSYA AADFSRFDH+YQQQQSKPKASR
Sbjct: 1  MAFRFLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHNYQQQQSKPKASR 60

Query: 61 VGDFFPVYVAFVIL 75
           GDF PVYVA  ++
Sbjct: 61 AGDFVPVYVAIGLI 74

BLAST of Lcy01g006550 vs. NCBI nr
Match: XP_023542210.1 (uncharacterized protein LOC111802176 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MA R+L TR+ AN FRT NKSPK+YATAT  RMKSYA AADFSRFD +YQQQQSKPKASR
Sbjct: 1  MAFRYLATRLAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDQNYQQQQSKPKASR 60

Query: 61 VGDFFPVYVAFVIL 75
           GDF PVYVA  ++
Sbjct: 61 AGDFVPVYVAIGLI 74

BLAST of Lcy01g006550 vs. NCBI nr
Match: XP_022968331.1 (uncharacterized protein LOC111467595 [Cucurbita maxima])

HSP 1 Score: 107.5 bits (267), Expect = 5.3e-20
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MA R+L  R+ AN FRT NKSPK+YATAT  RMKSYA AADFSRFDH YQQQQSK KASR
Sbjct: 1  MAFRYLAARVAANSFRTVNKSPKSYATATEARMKSYAPAADFSRFDHDYQQQQSKLKASR 60

Query: 61 VGDFFPVYVAFVIL 75
           GDF PVYVA  ++
Sbjct: 61 AGDFVPVYVAIGLI 74

BLAST of Lcy01g006550 vs. NCBI nr
Match: XP_008439275.1 (PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo] >KAA0033690.1 uncharacterized protein E6C27_scaffold239G001600 [Cucumis melo var. makuwa] >TYK22983.1 uncharacterized protein E5676_scaffold386G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 53/70 (75.71%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 1  MALRFLVTRMVANGFRTANKSPKTYATATAPRMKSYASAADFSRFDHHYQQQQSKPKASR 60
          MALR+LV+RM ANGFRT+NKS +TYATAT PRMKSYA  ADFS FDH     QSKPKASR
Sbjct: 1  MALRYLVSRMAANGFRTSNKSTRTYATATTPRMKSYAPTADFSHFDH-----QSKPKASR 60

Query: 61 VGDFFPVYVA 71
           GDF PVYVA
Sbjct: 61 AGDFVPVYVA 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G1399.4e-2377.03uncharacterized protein LOC111449717 OS=Cucurbita moschata OX=3662 GN=LOC1114497... [more]
A0A6J1HUK32.6e-2072.97uncharacterized protein LOC111467595 OS=Cucurbita maxima OX=3661 GN=LOC111467595... [more]
A0A5D3DHE38.3e-1975.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AZ278.3e-1975.71uncharacterized protein LOC103484107 OS=Cucumis melo OX=3656 GN=LOC103484107 PE=... [more]
A0A0A0L6106.5e-1670.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183970 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038877441.11.0e-2384.29uncharacterized protein LOC120069725 [Benincasa hispida][more]
XP_022945500.11.9e-2277.03uncharacterized protein LOC111449717 [Cucurbita moschata] >KAG6574202.1 hypothet... [more]
XP_023542210.13.7e-2174.32uncharacterized protein LOC111802176 [Cucurbita pepo subsp. pepo][more]
XP_022968331.15.3e-2072.97uncharacterized protein LOC111467595 [Cucurbita maxima][more]
XP_008439275.11.7e-1875.71PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo] >KAA0033690.1 unc... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g006550.1Lcy01g006550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane