Lcy01g006060 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g006060
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Flap endonuclease GEN-like 1
Location	Chr01: 8648051 .. 8649403 (+)
RNA-Seq Expression	Lcy01g006060
Synteny	Lcy01g006060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCAAATTTTCCCAGTAGTGAACTTGTTCAAATATACCTGGGCGACAATCATAGTTATTTTAGTGGTATGAGTCCACATTTGCATTTTAAGTAGCAAAAATTGTTACCGATGTTTTCTATTTGATGAACAAATCTCTGGTGCTGCTATGACCCCGTGACTGATTAATTGAAACGCATCCATTCGGGCAGCAAATGGGCGTTATTTTCAAATTTTGCTGTGTTTTGGAACAAACACCTCCTATTTTAAATGAAACGATGCTTACATGCTTGTTTAAGGAGGCCTTTTCAATCTTTAAATTAGTTAGTGTCTAAGATTGTTTTGAATAACTTTTTTGCACATGTTAAGCTTTTATCTCATTTGGTCCCTTTCCACTGCAGATGATGACCTTATATTATCTTGGGGAAGCCCGAGAACCGAAATGCTGATTGATTTTTTAGTTTTTCATCTACGGTGGGAGCCATCTTACATTCGTCAAAGGATGCTTCCCATGCTATCCACCATTTTTCTCAGAGAAAAGGCTAATAATCCAATTCAAACTTTGTTATACGGCCAGTACGAGTTTGATTCCATACTTAGAGAAAAAATAAGATATGGACATCCGTTTTATGTTGTCAAATGGAAAAAGGCCACCCCTACACTCGGCAATGTTGTAAACGAAGGCTCTTCCGGGGGATTTGGCACTGGACCAGAAGATGCCATTGACGTCGATGAACCAGTGGATTTAACGGATGAATCTGATTCCCCAGAAATTCATATTCAAGACGGGTGCTCCTTTTTGTTGACCGACGAGAATATGGACCTTGTACGTGCTGCATATCCTGAACAGGCTGCCAAATTTTTGCAGGAAATGGTAATCATCCTTTGTTTTTAGTTCTATGCCTCATTTCTTCCCTGTCTTTGATCTTTGTACTGTAGCTTTGCTTTTGTTCTAACTATACTATTGAAGTGGGAATGGCTGAGCTCTAAAGACAGTTCATTTTTTCAATGTTTACAAACTAGCTTTAGTTGATGCTTGGGATTGTATGTGAATCTACTGATGTTGATGTCTTAAGCTGCAATGAATAAATTTCATTCATGTTTGAAAATTTCTTGGAACTAAAGGAAGTGAAAAGGCAAAAGACACCAGCCACTCCACCTTGCGGCGGGACTAGCGGAAAGTCTGATTCATCGAAGGCGAAAGGTGTCCAGTTAAGTATAACCGAGTTCTATCGTGCAACCAAAACACAACAAGCAACGGATGCAGGAGATTCGACAAATGAGGGCGAGGAGACAAGTACTGGAAAGAGGAAATCATCAAGTTCTACTCTTTCAAAGTCGGTAAGACGTCGCCTTTTGTTCGAGGACTAG

mRNA sequence

ATGGAGCCAAATTTTCCCAGTAGTGAACTTGTTCAAATATACCTGGGCGACAATCATAGTTATTTTAGTGATGATGACCTTATATTATCTTGGGGAAGCCCGAGAACCGAAATGCTGATTGATTTTTTAGTTTTTCATCTACGGTGGGAGCCATCTTACATTCGTCAAAGGATGCTTCCCATGCTATCCACCATTTTTCTCAGAGAAAAGGCTAATAATCCAATTCAAACTTTGTTATACGGCCAGTACGAGTTTGATTCCATACTTAGAGAAAAAATAAGATATGGACATCCGTTTTATGTTGTCAAATGGAAAAAGGCCACCCCTACACTCGGCAATGTTGTAAACGAAGGCTCTTCCGGGGGATTTGGCACTGGACCAGAAGATGCCATTGACGTCGATGAACCAGTGGATTTAACGGATGAATCTGATTCCCCAGAAATTCATATTCAAGACGGGTGCTCCTTTTTGTTGACCGACGAGAATATGGACCTTGTACGTGCTGCATATCCTGAACAGGCTGCCAAATTTTTGCAGGAAATGGAAGTGAAAAGGCAAAAGACACCAGCCACTCCACCTTGCGGCGGGACTAGCGGAAAGTCTGATTCATCGAAGGCGAAAGGTGTCCAGTTAAGTATAACCGAGTTCTATCGTGCAACCAAAACACAACAAGCAACGGATGCAGGAGATTCGACAAATGAGGGCGAGGAGACAAGTACTGGAAAGAGGAAATCATCAAGTTCTACTCTTTCAAAGTCGGTAAGACGTCGCCTTTTGTTCGAGGACTAG

Coding sequence (CDS)

ATGGAGCCAAATTTTCCCAGTAGTGAACTTGTTCAAATATACCTGGGCGACAATCATAGTTATTTTAGTGATGATGACCTTATATTATCTTGGGGAAGCCCGAGAACCGAAATGCTGATTGATTTTTTAGTTTTTCATCTACGGTGGGAGCCATCTTACATTCGTCAAAGGATGCTTCCCATGCTATCCACCATTTTTCTCAGAGAAAAGGCTAATAATCCAATTCAAACTTTGTTATACGGCCAGTACGAGTTTGATTCCATACTTAGAGAAAAAATAAGATATGGACATCCGTTTTATGTTGTCAAATGGAAAAAGGCCACCCCTACACTCGGCAATGTTGTAAACGAAGGCTCTTCCGGGGGATTTGGCACTGGACCAGAAGATGCCATTGACGTCGATGAACCAGTGGATTTAACGGATGAATCTGATTCCCCAGAAATTCATATTCAAGACGGGTGCTCCTTTTTGTTGACCGACGAGAATATGGACCTTGTACGTGCTGCATATCCTGAACAGGCTGCCAAATTTTTGCAGGAAATGGAAGTGAAAAGGCAAAAGACACCAGCCACTCCACCTTGCGGCGGGACTAGCGGAAAGTCTGATTCATCGAAGGCGAAAGGTGTCCAGTTAAGTATAACCGAGTTCTATCGTGCAACCAAAACACAACAAGCAACGGATGCAGGAGATTCGACAAATGAGGGCGAGGAGACAAGTACTGGAAAGAGGAAATCATCAAGTTCTACTCTTTCAAAGTCGGTAAGACGTCGCCTTTTGTTCGAGGACTAG

Protein sequence

MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPMLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSSGGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQATDAGDSTNEGEETSTGKRKSSSSTLSKSVRRRLLFED

Homology

[Close]

BLAST of Lcy01g006060 vs. ExPASy Swiss-Prot
Match: Q64MA3 (Flap endonuclease GEN-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.6e-45
Identity = 119/284 (41.90%), Postives = 165/284 (58.10%), Query Frame = 0


Query: 2   EPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLPM 61
           E NFP+ E++ +YL D++    +   +L+W  P  E+L+DFL F   WEP+YIRQRMLPM
Sbjct: 356 ETNFPNEEIINLYLNDDNLDNENGVPLLTWNKPDMEILVDFLSFKQNWEPAYIRQRMLPM 415

Query: 62  LSTIFLREKANNPIQT-LLYGQYEFDSILREKIRYGHPFYVVKWKKAT-------PTLGN 121
           LSTI+LRE A++  ++ LLY QY+F SI R KIRYGHP+Y+VKWK+ T       P    
Sbjct: 416 LSTIYLREMASSQSKSFLLYDQYKFHSIQRIKIRYGHPYYLVKWKRVTRSMISNDPPSKQ 475

Query: 122 VVNEGSSGGFGT--GPEDAID--------VDEPVDLTDESDSPEIHIQDGCSFLLTDENM 181
              EG +       G ++ +D        + E  +L DE D P++   D   FLLTDE++
Sbjct: 476 TELEGKNDKVEVLDGDDEVVDEEEEEPTMISETTELLDEPDVPQVLDDDKDCFLLTDEDI 535

Query: 182 DLVRAAYPEQAAKFLQEMEVKRQKTPATPPCGGTSG--KSDSSKAKGVQLSITEFYRATK 241
           +LV AA+P++A +F +E  +K  K+ A       +G       +  GVQLSI EFYR+ K
Sbjct: 536 ELVNAAFPDEAQRFQEEQRLKEAKSIARKSKLNVAGFETPKGPRPSGVQLSIKEFYRSKK 595

Query: 242 TQQATDAGDSTNEGEETSTGKRKSS----SSTLSKSVRRRLLFE 262
                  G S + G++   G RKSS    S  L KSVRRRLLF+
Sbjct: 596 -------GLSGDSGKD---GSRKSSDVDLSKNLPKSVRRRLLFD 629

[Close]

BLAST of Lcy01g006060 vs. ExPASy Swiss-Prot
Match: Q9LPD2 (Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana OX=3702 GN=GEN1 PE=1 SV=3)

HSP 1 Score: 169.1 bits (427), Expect = 6.7e-41
Identity = 106/268 (39.55%), Postives = 153/268 (57.09%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           + P FP+ +++++YL D     + D   +SWG+P T ML+D +VF L W+PSY+R+ +LP
Sbjct: 343 LAPEFPNRKIIELYLSD--GLMTGDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLP 402

Query: 61  MLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGS 120
           MLSTI+LREKA NN    LL  QYEF SI   K RYGH  +V++W+K   T G   +   
Sbjct: 403 MLSTIYLREKARNNTGYALLCDQYEFHSIKCIKTRYGHQSFVIRWRKPKSTSGYSHSHSE 462

Query: 121 SGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAA 180
                  PE++I V    +E VD  D  + P++   +G  FLLTDE + LV++A+P++  
Sbjct: 463 -------PEESIVVLEEEEESVDPLDGLNEPQVQNDNGDCFLLTDECIGLVQSAFPDETE 522

Query: 181 KFLQEMEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDST 240
            FL E +++  K             +  +   GVQ SIT+FYR+ K     Q+ + G S+
Sbjct: 523 HFLHEKKLRESKKKNV---SEEETATPRATTMGVQRSITDFYRSAKKAAAGQSIETGGSS 582

Query: 241 NEGEETSTGKRKSSSSTLSKSVRRRLLF 261
               E       +SSS L+KSVRRRLLF
Sbjct: 583 KASAEKKRQATSTSSSNLTKSVRRRLLF 598

[Close]

BLAST of Lcy01g006060 vs. ExPASy TrEMBL
Match: A0A6J1HHW8 (flap endonuclease GEN-like 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464485 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.9e-118
Identity = 227/264 (85.98%), Postives = 237/264 (89.77%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+YL DNHSYFSDDDLILSW SP+TE+LIDFLVFHLRWEPSYIRQR+LP
Sbjct: 339 MEPNFPSSELIQMYLCDNHSYFSDDDLILSWESPKTEILIDFLVFHLRWEPSYIRQRLLP 398

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLLY QYEFDSILREKIRYGHPFYVVKWK+A P L NVV EGSS
Sbjct: 399 MLSTIFLREMANNPIQTLLYDQYEFDSILREKIRYGHPFYVVKWKRAIPVLDNVVYEGSS 458

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
            G GTGPEDAIDVDEPVDLTDESDSP+IHIQ+GCSFLLTDENMDLVRAAYPEQ AKFLQE
Sbjct: 459 EGLGTGPEDAIDVDEPVDLTDESDSPKIHIQEGCSFLLTDENMDLVRAAYPEQTAKFLQE 518

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            EVKRQKTP T P   TSGKSDS KAKG QLSITEFYRATKTQQ T +  D TNEGEETS
Sbjct: 519 KEVKRQKTPTTTPPSETSGKSDSLKAKGAQLSITEFYRATKTQQQTAETTDLTNEGEETS 578

Query: 241 TGKRK--SSSSTLSKSVRRRLLFE 262
           T KRK  SSSSTLSKSVRRRLLF+
Sbjct: 579 TEKRKASSSSSTLSKSVRRRLLFD 602

[Close]

BLAST of Lcy01g006060 vs. ExPASy TrEMBL
Match: A0A6J1HKX7 (flap endonuclease GEN-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464485 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.9e-118
Identity = 227/264 (85.98%), Postives = 237/264 (89.77%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+YL DNHSYFSDDDLILSW SP+TE+LIDFLVFHLRWEPSYIRQR+LP
Sbjct: 289 MEPNFPSSELIQMYLCDNHSYFSDDDLILSWESPKTEILIDFLVFHLRWEPSYIRQRLLP 348

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLLY QYEFDSILREKIRYGHPFYVVKWK+A P L NVV EGSS
Sbjct: 349 MLSTIFLREMANNPIQTLLYDQYEFDSILREKIRYGHPFYVVKWKRAIPVLDNVVYEGSS 408

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
            G GTGPEDAIDVDEPVDLTDESDSP+IHIQ+GCSFLLTDENMDLVRAAYPEQ AKFLQE
Sbjct: 409 EGLGTGPEDAIDVDEPVDLTDESDSPKIHIQEGCSFLLTDENMDLVRAAYPEQTAKFLQE 468

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            EVKRQKTP T P   TSGKSDS KAKG QLSITEFYRATKTQQ T +  D TNEGEETS
Sbjct: 469 KEVKRQKTPTTTPPSETSGKSDSLKAKGAQLSITEFYRATKTQQQTAETTDLTNEGEETS 528

Query: 241 TGKRK--SSSSTLSKSVRRRLLFE 262
           T KRK  SSSSTLSKSVRRRLLF+
Sbjct: 529 TEKRKASSSSSTLSKSVRRRLLFD 552

[Close]

BLAST of Lcy01g006060 vs. ExPASy TrEMBL
Match: A0A5D3DLF9 (Flap endonuclease GEN-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00140 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.2e-118
Identity = 225/263 (85.55%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTE+L+DFLVFHL+WEPSYIRQRMLP
Sbjct: 347 MEPNFPSSELIQMYQCDNHSYFSDDDLVLSWGSPRTELLVDFLVFHLQWEPSYIRQRMLP 406

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLL+GQYEFDSILREKIR+GH FYVVKWKKA P + NV+ E S 
Sbjct: 407 MLSTIFLREMANNPIQTLLFGQYEFDSILREKIRFGHSFYVVKWKKAVPAISNVMYEDSL 466

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
           G FGTGPEDAIDVDE VDLTDE DSP+IHIQDGCSFLLTDENM+LV AAYPEQAAKFLQE
Sbjct: 467 GEFGTGPEDAIDVDEAVDLTDEFDSPKIHIQDGCSFLLTDENMELVGAAYPEQAAKFLQE 526

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            E+KRQKTP+TP C GTSGKSDSSKAKGVQLSITEFYRATKTQQ T D  DSTNE EETS
Sbjct: 527 KEMKRQKTPSTPAC-GTSGKSDSSKAKGVQLSITEFYRATKTQQQTADTTDSTNEDEETS 586

Query: 241 TGKRK-SSSSTLSKSVRRRLLFE 262
           TGKRK SSSSTLSKSVRRRLLF+
Sbjct: 587 TGKRKASSSSTLSKSVRRRLLFD 608

[Close]

BLAST of Lcy01g006060 vs. ExPASy TrEMBL
Match: A0A5A7TAP1 (Flap endonuclease GEN-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G003140 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.2e-118
Identity = 225/263 (85.55%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTE+L+DFLVFHL+WEPSYIRQRMLP
Sbjct: 375 MEPNFPSSELIQMYQCDNHSYFSDDDLVLSWGSPRTELLVDFLVFHLQWEPSYIRQRMLP 434

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLL+GQYEFDSILREKIR+GH FYVVKWKKA P + NV+ E S 
Sbjct: 435 MLSTIFLREMANNPIQTLLFGQYEFDSILREKIRFGHSFYVVKWKKAVPAISNVMYEDSL 494

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
           G FGTGPEDAIDVDE VDLTDE DSP+IHIQDGCSFLLTDENM+LV AAYPEQAAKFLQE
Sbjct: 495 GEFGTGPEDAIDVDEAVDLTDEFDSPKIHIQDGCSFLLTDENMELVGAAYPEQAAKFLQE 554

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            E+KRQKTP+TP C GTSGKSDSSKAKGVQLSITEFYRATKTQQ T D  DSTNE EETS
Sbjct: 555 KEMKRQKTPSTPAC-GTSGKSDSSKAKGVQLSITEFYRATKTQQQTADTTDSTNEDEETS 614

Query: 241 TGKRK-SSSSTLSKSVRRRLLFE 262
           TGKRK SSSSTLSKSVRRRLLF+
Sbjct: 615 TGKRKASSSSTLSKSVRRRLLFD 636

[Close]

BLAST of Lcy01g006060 vs. ExPASy TrEMBL
Match: A0A6J1DSI1 (flap endonuclease GEN-like 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023108 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 7.0e-118
Identity = 220/261 (84.29%), Postives = 235/261 (90.04%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           +EP FPSSEL+++YL DNHS+FSDDDLILSWGSPRTEML+DFLVFHLRWEPSYIRQRMLP
Sbjct: 347 VEPKFPSSELIKMYLCDNHSHFSDDDLILSWGSPRTEMLVDFLVFHLRWEPSYIRQRMLP 406

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPI TLLYGQYEFDSILREKIRYGH FYVVKWKKA P L NV+ EGSS
Sbjct: 407 MLSTIFLREMANNPIGTLLYGQYEFDSILREKIRYGHQFYVVKWKKAVPALSNVIYEGSS 466

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
            G GTGPED IDVDEPVDLTDESDSP+IHIQDGCSFLLTDENMDLVRAAYPEQAAKFL E
Sbjct: 467 EGSGTGPEDGIDVDEPVDLTDESDSPKIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLHE 526

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQATDAGDSTNEGEETST 240
            E+K+QK   + PC GTS KSDSSK KGVQLSITEFYR+TK QQA +  DSTNEGEETST
Sbjct: 527 KELKKQKKSTSTPC-GTSEKSDSSKVKGVQLSITEFYRSTKAQQAAERVDSTNEGEETST 586

Query: 241 GKRKSSSSTLSKSVRRRLLFE 262
           GKRK SS+TLSKSVRRRLLF+
Sbjct: 587 GKRKESSTTLSKSVRRRLLFD 606

[Close]

BLAST of Lcy01g006060 vs. NCBI nr
Match: XP_038876411.1 (flap endonuclease GEN-like 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 228/263 (86.69%), Postives = 241/263 (91.63%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTEML+DFLVFHLRWEPSYIRQRMLP
Sbjct: 374 MEPNFPSSELIQMYQCDNHSYFSDDDLVLSWGSPRTEMLVDFLVFHLRWEPSYIRQRMLP 433

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKA PTL NV+ EGSS
Sbjct: 434 MLSTIFLREMANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKAVPTLSNVIYEGSS 493

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
            GFGTGP+DAID+DE VDLTDESDSP+IHIQDGCSFLLTDEN+DLV AAYPEQAA FLQE
Sbjct: 494 EGFGTGPDDAIDIDETVDLTDESDSPKIHIQDGCSFLLTDENIDLVGAAYPEQAANFLQE 553

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            E+KRQKTP TP C GTSGKSDSSK KGVQLSITEFYRATKTQQ T +  D TNE EETS
Sbjct: 554 KEMKRQKTPTTPAC-GTSGKSDSSKGKGVQLSITEFYRATKTQQQTSETTDLTNEDEETS 613

Query: 241 TGKRK-SSSSTLSKSVRRRLLFE 262
           TGKRK S+SSTLSKSVRRRLLF+
Sbjct: 614 TGKRKASTSSTLSKSVRRRLLFD 635

[Close]

BLAST of Lcy01g006060 vs. NCBI nr
Match: XP_038876412.1 (flap endonuclease GEN-like 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 228/263 (86.69%), Postives = 241/263 (91.63%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTEML+DFLVFHLRWEPSYIRQRMLP
Sbjct: 347 MEPNFPSSELIQMYQCDNHSYFSDDDLVLSWGSPRTEMLVDFLVFHLRWEPSYIRQRMLP 406

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKA PTL NV+ EGSS
Sbjct: 407 MLSTIFLREMANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKAVPTLSNVIYEGSS 466

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
            GFGTGP+DAID+DE VDLTDESDSP+IHIQDGCSFLLTDEN+DLV AAYPEQAA FLQE
Sbjct: 467 EGFGTGPDDAIDIDETVDLTDESDSPKIHIQDGCSFLLTDENIDLVGAAYPEQAANFLQE 526

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            E+KRQKTP TP C GTSGKSDSSK KGVQLSITEFYRATKTQQ T +  D TNE EETS
Sbjct: 527 KEMKRQKTPTTPAC-GTSGKSDSSKGKGVQLSITEFYRATKTQQQTSETTDLTNEDEETS 586

Query: 241 TGKRK-SSSSTLSKSVRRRLLFE 262
           TGKRK S+SSTLSKSVRRRLLF+
Sbjct: 587 TGKRKASTSSTLSKSVRRRLLFD 608

[Close]

BLAST of Lcy01g006060 vs. NCBI nr
Match: XP_022964473.1 (flap endonuclease GEN-like 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 435.3 bits (1118), Expect = 3.8e-118
Identity = 227/264 (85.98%), Postives = 237/264 (89.77%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+YL DNHSYFSDDDLILSW SP+TE+LIDFLVFHLRWEPSYIRQR+LP
Sbjct: 289 MEPNFPSSELIQMYLCDNHSYFSDDDLILSWESPKTEILIDFLVFHLRWEPSYIRQRLLP 348

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLLY QYEFDSILREKIRYGHPFYVVKWK+A P L NVV EGSS
Sbjct: 349 MLSTIFLREMANNPIQTLLYDQYEFDSILREKIRYGHPFYVVKWKRAIPVLDNVVYEGSS 408

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
            G GTGPEDAIDVDEPVDLTDESDSP+IHIQ+GCSFLLTDENMDLVRAAYPEQ AKFLQE
Sbjct: 409 EGLGTGPEDAIDVDEPVDLTDESDSPKIHIQEGCSFLLTDENMDLVRAAYPEQTAKFLQE 468

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            EVKRQKTP T P   TSGKSDS KAKG QLSITEFYRATKTQQ T +  D TNEGEETS
Sbjct: 469 KEVKRQKTPTTTPPSETSGKSDSLKAKGAQLSITEFYRATKTQQQTAETTDLTNEGEETS 528

Query: 241 TGKRK--SSSSTLSKSVRRRLLFE 262
           T KRK  SSSSTLSKSVRRRLLF+
Sbjct: 529 TEKRKASSSSSTLSKSVRRRLLFD 552

[Close]

BLAST of Lcy01g006060 vs. NCBI nr
Match: XP_022964472.1 (flap endonuclease GEN-like 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 435.3 bits (1118), Expect = 3.8e-118
Identity = 227/264 (85.98%), Postives = 237/264 (89.77%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+YL DNHSYFSDDDLILSW SP+TE+LIDFLVFHLRWEPSYIRQR+LP
Sbjct: 339 MEPNFPSSELIQMYLCDNHSYFSDDDLILSWESPKTEILIDFLVFHLRWEPSYIRQRLLP 398

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLLY QYEFDSILREKIRYGHPFYVVKWK+A P L NVV EGSS
Sbjct: 399 MLSTIFLREMANNPIQTLLYDQYEFDSILREKIRYGHPFYVVKWKRAIPVLDNVVYEGSS 458

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
            G GTGPEDAIDVDEPVDLTDESDSP+IHIQ+GCSFLLTDENMDLVRAAYPEQ AKFLQE
Sbjct: 459 EGLGTGPEDAIDVDEPVDLTDESDSPKIHIQEGCSFLLTDENMDLVRAAYPEQTAKFLQE 518

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            EVKRQKTP T P   TSGKSDS KAKG QLSITEFYRATKTQQ T +  D TNEGEETS
Sbjct: 519 KEVKRQKTPTTTPPSETSGKSDSLKAKGAQLSITEFYRATKTQQQTAETTDLTNEGEETS 578

Query: 241 TGKRK--SSSSTLSKSVRRRLLFE 262
           T KRK  SSSSTLSKSVRRRLLF+
Sbjct: 579 TEKRKASSSSSTLSKSVRRRLLFD 602

[Close]

BLAST of Lcy01g006060 vs. NCBI nr
Match: TYK24473.1 (flap endonuclease GEN-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 434.5 bits (1116), Expect = 6.5e-118
Identity = 225/263 (85.55%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           MEPNFPSSEL+Q+Y  DNHSYFSDDDL+LSWGSPRTE+L+DFLVFHL+WEPSYIRQRMLP
Sbjct: 347 MEPNFPSSELIQMYQCDNHSYFSDDDLVLSWGSPRTELLVDFLVFHLQWEPSYIRQRMLP 406

Query: 61  MLSTIFLREKANNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGSS 120
           MLSTIFLRE ANNPIQTLL+GQYEFDSILREKIR+GH FYVVKWKKA P + NV+ E S 
Sbjct: 407 MLSTIFLREMANNPIQTLLFGQYEFDSILREKIRFGHSFYVVKWKKAVPAISNVMYEDSL 466

Query: 121 GGFGTGPEDAIDVDEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAAKFLQE 180
           G FGTGPEDAIDVDE VDLTDE DSP+IHIQDGCSFLLTDENM+LV AAYPEQAAKFLQE
Sbjct: 467 GEFGTGPEDAIDVDEAVDLTDEFDSPKIHIQDGCSFLLTDENMELVGAAYPEQAAKFLQE 526

Query: 181 MEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATKTQQAT-DAGDSTNEGEETS 240
            E+KRQKTP+TP C GTSGKSDSSKAKGVQLSITEFYRATKTQQ T D  DSTNE EETS
Sbjct: 527 KEMKRQKTPSTPAC-GTSGKSDSSKAKGVQLSITEFYRATKTQQQTADTTDSTNEDEETS 586

Query: 241 TGKRK-SSSSTLSKSVRRRLLFE 262
           TGKRK SSSSTLSKSVRRRLLF+
Sbjct: 587 TGKRKASSSSTLSKSVRRRLLFD 608

[Close]

BLAST of Lcy01g006060 vs. TAIR 10
Match: AT1G01880.1 (5'-3' exonuclease family protein )

HSP 1 Score: 169.1 bits (427), Expect = 4.8e-42
Identity = 106/268 (39.55%), Postives = 153/268 (57.09%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           + P FP+ +++++YL D     + D   +SWG+P T ML+D +VF L W+PSY+R+ +LP
Sbjct: 343 LAPEFPNRKIIELYLSD--GLMTGDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLP 402

Query: 61  MLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGS 120
           MLSTI+LREKA NN    LL  QYEF SI   K RYGH  +V++W+K   T G   +   
Sbjct: 403 MLSTIYLREKARNNTGYALLCDQYEFHSIKCIKTRYGHQSFVIRWRKPKSTSGYSHSHSE 462

Query: 121 SGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAA 180
                  PE++I V    +E VD  D  + P++   +G  FLLTDE + LV++A+P++  
Sbjct: 463 -------PEESIVVLEEEEESVDPLDGLNEPQVQNDNGDCFLLTDECIGLVQSAFPDETE 522

Query: 181 KFLQEMEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDST 240
            FL E +++  K             +  +   GVQ SIT+FYR+ K     Q+ + G S+
Sbjct: 523 HFLHEKKLRESKKKNV---SEEETATPRATTMGVQRSITDFYRSAKKAAAGQSIETGGSS 582

Query: 241 NEGEETSTGKRKSSSSTLSKSVRRRLLF 261
               E       +SSS L+KSVRRRLLF
Sbjct: 583 KASAEKKRQATSTSSSNLTKSVRRRLLF 598

[Close]

BLAST of Lcy01g006060 vs. TAIR 10
Match: AT1G01880.2 (5'-3' exonuclease family protein )

HSP 1 Score: 169.1 bits (427), Expect = 4.8e-42
Identity = 106/268 (39.55%), Postives = 153/268 (57.09%), Query Frame = 0


Query: 1   MEPNFPSSELVQIYLGDNHSYFSDDDLILSWGSPRTEMLIDFLVFHLRWEPSYIRQRMLP 60
           + P FP+ +++++YL D     + D   +SWG+P T ML+D +VF L W+PSY+R+ +LP
Sbjct: 342 LAPEFPNRKIIELYLSD--GLMTGDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLP 401

Query: 61  MLSTIFLREKA-NNPIQTLLYGQYEFDSILREKIRYGHPFYVVKWKKATPTLGNVVNEGS 120
           MLSTI+LREKA NN    LL  QYEF SI   K RYGH  +V++W+K   T G   +   
Sbjct: 402 MLSTIYLREKARNNTGYALLCDQYEFHSIKCIKTRYGHQSFVIRWRKPKSTSGYSHSHSE 461

Query: 121 SGGFGTGPEDAIDV----DEPVDLTDESDSPEIHIQDGCSFLLTDENMDLVRAAYPEQAA 180
                  PE++I V    +E VD  D  + P++   +G  FLLTDE + LV++A+P++  
Sbjct: 462 -------PEESIVVLEEEEESVDPLDGLNEPQVQNDNGDCFLLTDECIGLVQSAFPDETE 521

Query: 181 KFLQEMEVKRQKTPATPPCGGTSGKSDSSKAKGVQLSITEFYRATK---TQQATDAGDST 240
            FL E +++  K             +  +   GVQ SIT+FYR+ K     Q+ + G S+
Sbjct: 522 HFLHEKKLRESKKKNV---SEEETATPRATTMGVQRSITDFYRSAKKAAAGQSIETGGSS 581

Query: 241 NEGEETSTGKRKSSSSTLSKSVRRRLLF 261
               E       +SSS L+KSVRRRLLF
Sbjct: 582 KASAEKKRQATSTSSSNLTKSVRRRLLF 597

The following BLAST results are available for this feature:

BLAST of Lcy01g006060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q64MA3	2.6e-45	41.90	Flap endonuclease GEN-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD PE=...	[more]
Q9LPD2	6.7e-41	39.55	Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana OX=3702 GN=GEN1 PE=1 SV=3	[more]

BLAST of Lcy01g006060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHW8	1.9e-118	85.98	flap endonuclease GEN-like 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HKX7	1.9e-118	85.98	flap endonuclease GEN-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5D3DLF9	3.2e-118	85.55	Flap endonuclease GEN-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7TAP1	3.2e-118	85.55	Flap endonuclease GEN-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1DSI1	7.0e-118	84.29	flap endonuclease GEN-like 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Lcy01g006060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876411.1	1.1e-120	86.69	flap endonuclease GEN-like 1 isoform X1 [Benincasa hispida]	[more]
XP_038876412.1	1.1e-120	86.69	flap endonuclease GEN-like 1 isoform X2 [Benincasa hispida]	[more]
XP_022964473.1	3.8e-118	85.98	flap endonuclease GEN-like 1 isoform X2 [Cucurbita moschata]	[more]
XP_022964472.1	3.8e-118	85.98	flap endonuclease GEN-like 1 isoform X1 [Cucurbita moschata]	[more]
TYK24473.1	6.5e-118	85.55	flap endonuclease GEN-like 1 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy01g006060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01880.1	4.8e-42	39.55	5'-3' exonuclease family protein	[more]
AT1G01880.2	4.8e-42	39.55	5'-3' exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..235
None	No IPR available	PANTHER	PTHR11081:SF59	FLAP ENDONUCLEASE GEN-LIKE 1	coord: 1..250
IPR006084	XPG/Rad2 endonuclease	PANTHER	PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	coord: 1..250
IPR036279	5'-3' exonuclease, C-terminal domain superfamily	SUPERFAMILY	47807	5' to 3' exonuclease, C-terminal subdomain	coord: 3..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g006060.1	Lcy01g006060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009555	pollen development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003697	single-stranded DNA binding