Lcy01g006030 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g006030
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LysM domain-containing protein
Location	Chr01: 8615162 .. 8615657 (-)
RNA-Seq Expression	Lcy01g006030
Synteny	Lcy01g006030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCGAAATCCTGCTACTCTGTTTTCCTCTTCATGGCGCTCATACTCCTCGCCTCTGCAGAATCCGGCGACGACCAGCATCAGCCTTGCGACGAGATCTACGTCGTCGGAGAAGGCGAGACGCTGCACACGATCAGCGCCAAGTGCGACGATCCGTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTGTCATTAAAATTACGCCAACGGTGATCTCCAGGAAGCTGTTGTTGAGGTCAGGTAGCTAGCCGGAATCCGGTTTGTTTTTTGGCTGGATTCTTCTTCGTCTTTCGTTCGTTTTGTAAATTTATGAATCGCTTCTGTAAATTCATTGAGAATTAGACGATGTTTGTTGTTGGCTCTGGCTGGATTCTTCGTCTTCTCTGTTTGTAAATTTACGAATTGTTTTTGTAAATTGATTGAGGAGATCGGATGATGTTTGTGTAATTATTATACGTATGAAAT

mRNA sequence

ATGGCTTCCTCGAAATCCTGCTACTCTGTTTTCCTCTTCATGGCGCTCATACTCCTCGCCTCTGCAGAATCCGGCGACGACCAGCATCAGCCTTGCGACGAGATCTACGTCGTCGGAGAAGGCGAGACGCTGCACACGATCAGCGCCAAGTGCGACGATCCGTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTGTCATTAAAATTACGCCAACGGTGATCTCCAGGAAGCTGTTGTTGAGGTCAGGTAGCTAGCCGGAATCCGGTTTGTTTTTTGGCTGGATTCTTCTTCGTCTTTCGTTCGTTTTGTAAATTTATGAATCGCTTCTGTAAATTCATTGAGAATTAGACGATGTTTGTTGTTGGCTCTGGCTGGATTCTTCGTCTTCTCTGTTTGTAAATTTACGAATTGTTTTTGTAAATTGATTGAGGAGATCGGATGATGTTTGTGTAATTATTATACGTATGAAAT

Coding sequence (CDS)

ATGGCTTCCTCGAAATCCTGCTACTCTGTTTTCCTCTTCATGGCGCTCATACTCCTCGCCTCTGCAGAATCCGGCGACGACCAGCATCAGCCTTGCGACGAGATCTACGTCGTCGGAGAAGGCGAGACGCTGCACACGATCAGCGCCAAGTGCGACGATCCGTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTGTCATTAAAATTACGCCAACGGTGATCTCCAGGAAGCTGTTGTTGAGGTCAGGTAGCTAG

Protein sequence

MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLRSGS

Homology

[Close]

BLAST of Lcy01g006030 vs. ExPASy TrEMBL
Match: A0A6J1KYG6 (uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDEN 60
           MASS SCYSVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D N
Sbjct: 41  MASSISCYSVFIFMALMLLASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDYN 100

Query: 61  PQIQDSDDVFPGLVIKITPTVISRKLLLR 90
           PQIQDSDDVFPGL+IKITP++ SRKL  R
Sbjct: 101 PQIQDSDDVFPGLLIKITPSLNSRKLFFR 124

[Close]

BLAST of Lcy01g006030 vs. ExPASy TrEMBL
Match: A0A6J1H7L7 (uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC111460313 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.0e-28
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDEN 60
           MASS SC SVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D N
Sbjct: 41  MASSTSCCSVFIFMALMLLASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDYN 100

Query: 61  PQIQDSDDVFPGLVIKITPTVISRKLLLR 90
           PQIQDSDDVFPGL+IKITP++ SRKLL R
Sbjct: 101 PQIQDSDDVFPGLLIKITPSLNSRKLLFR 124

[Close]

BLAST of Lcy01g006030 vs. ExPASy TrEMBL
Match: A0A0A0K9P3 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 6  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQI 65
          S +SVF+  MALI+ +ASAES     +PCD+IYVV EGETLHTISAKC DPFI+D NP I
Sbjct: 3  SYFSVFVTVMALIIVVASAES-----RPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHI 62

Query: 66 QDSDDVFPGLVIKITPTVI-SRKLLL 89
          QDSDDVFPGL+I+ITPT+I SRKLLL
Sbjct: 63 QDSDDVFPGLLIQITPTLINSRKLLL 83

[Close]

BLAST of Lcy01g006030 vs. ExPASy TrEMBL
Match: A0A5D3DLK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00150 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.3e-20
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 6  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQI 65
          S +SVF+  MALI+ +ASAES     +PC++IYVV EGETLHTISAKC DPFI+D NP I
Sbjct: 3  SYFSVFITVMALIMVVASAES-----KPCNDIYVVKEGETLHTISAKCRDPFIVDNNPHI 62

Query: 66 QDSDDVFPGLVIKITPTVI-SRKLLL 89
          QDSDDVFPGL+I+ITPT+I SRKLLL
Sbjct: 63 QDSDDVFPGLLIQITPTLINSRKLLL 83

[Close]

BLAST of Lcy01g006030 vs. ExPASy TrEMBL
Match: F6HP74 (LysM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_16s0100g00270 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.5e-19
Identity = 57/99 (57.58%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 1   MASSKSCYSVFLFMALILLAS--------AESGDDQHQ----PCDEIYVVGEGETLHTIS 60
           +A + SCY   + +ALILLAS         +     HQ    PCDEIYVVGEGETLHTIS
Sbjct: 15  VADAASCYCAVILVALILLASVREYSSLPTDESVKGHQLLARPCDEIYVVGEGETLHTIS 74

Query: 61  AKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLL 88
            KC DP+I+++NP I D DDVFPGLVIKITP+   RKLL
Sbjct: 75  DKCGDPYIVEQNPHIHDPDDVFPGLVIKITPSK-QRKLL 112

[Close]

BLAST of Lcy01g006030 vs. NCBI nr
Match: XP_023006696.1 (uncharacterized protein LOC111499354 [Cucurbita maxima])

HSP 1 Score: 133.7 bits (335), Expect = 8.4e-28
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDEN 60
           MASS SCYSVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D N
Sbjct: 41  MASSISCYSVFIFMALMLLASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDYN 100

Query: 61  PQIQDSDDVFPGLVIKITPTVISRKLLLR 90
           PQIQDSDDVFPGL+IKITP++ SRKL  R
Sbjct: 101 PQIQDSDDVFPGLLIKITPSLNSRKLFFR 124

[Close]

BLAST of Lcy01g006030 vs. NCBI nr
Match: XP_022959284.1 (uncharacterized protein LOC111460313 [Cucurbita moschata])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDEN 60
           MASS SC SVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D N
Sbjct: 41  MASSTSCCSVFIFMALMLLASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDYN 100

Query: 61  PQIQDSDDVFPGLVIKITPTVISRKLLLR 90
           PQIQDSDDVFPGL+IKITP++ SRKLL R
Sbjct: 101 PQIQDSDDVFPGLLIKITPSLNSRKLLFR 124

[Close]

BLAST of Lcy01g006030 vs. NCBI nr
Match: KAG7013356.1 (hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDEN 60
          MASS SC SVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D N
Sbjct: 1  MASSTSCCSVFIFMALMLLASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDYN 60

Query: 61 PQIQDSDDVFPGLVIKITPTVISRKLLLR 90
          PQIQDSDDVFPGL+IKITP++ SRKLL R
Sbjct: 61 PQIQDSDDVFPGLLIKITPSLNSRKLLFR 84

[Close]

BLAST of Lcy01g006030 vs. NCBI nr
Match: KAG6574776.1 (hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 9.3e-27
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDEN 60
           MASS SC SVF+ MAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D N
Sbjct: 41  MASSTSCCSVFILMALMLLASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDYN 100

Query: 61  PQIQDSDDVFPGLVIKITPTVISRKLLLR 90
           PQIQDSDDVFPGL+IKITP++ SRKLL R
Sbjct: 101 PQIQDSDDVFPGLLIKITPSLNSRKLLFR 124

[Close]

BLAST of Lcy01g006030 vs. NCBI nr
Match: KGN46208.1 (hypothetical protein Csa_005039 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-20
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 6  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQI 65
          S +SVF+  MALI+ +ASAES     +PCD+IYVV EGETLHTISAKC DPFI+D NP I
Sbjct: 3  SYFSVFVTVMALIIVVASAES-----RPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHI 62

Query: 66 QDSDDVFPGLVIKITPTVI-SRKLLL 89
          QDSDDVFPGL+I+ITPT+I SRKLLL
Sbjct: 63 QDSDDVFPGLLIQITPTLINSRKLLL 83

[Close]

BLAST of Lcy01g006030 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-19
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 7   CYSVFLFMALILLASAESGDDQH--------QPCDEIYVVGEGETLHTISAKCDDPFIID 66
           C +V L   ++LL+  E+             +PC+EIY+VGEGETLHTI  KC DPFI++
Sbjct: 15  CSAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHTIGDKCGDPFIVE 74

Query: 67  ENPQIQDSDDVFPGLVIKITPTVISRKL 87
            NP I D DDVFPGLV+KI P   +RKL
Sbjct: 75  RNPHIHDPDDVFPGLVLKIAPFYFNRKL 102

[Close]

BLAST of Lcy01g006030 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 81.3 bits (199), Expect = 4.6e-16
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 30  QPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKI 78
           +PC+E+YVVGEG+TLH+IS KC DPFI++ NP I D DDVFPGL+IK+
Sbjct: 57  RPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Lcy01g006030 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 32  CDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTV 82
           CDEIY V EGETL TIS KC DP+I++ NP I D DD+FPGL+I+ITP++
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPSL 109

The following BLAST results are available for this feature:

BLAST of Lcy01g006030 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g006030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYG6	4.1e-28	75.28	uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354...	[more]
A0A6J1H7L7	9.0e-28	75.28	uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]
A0A0A0K9P3	1.4e-20	72.09	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 S...	[more]
A0A5D3DLK6	5.3e-20	70.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
F6HP74	4.5e-19	57.58	LysM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_16s0100g00270 P...	[more]

BLAST of Lcy01g006030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006696.1	8.4e-28	75.28	uncharacterized protein LOC111499354 [Cucurbita maxima]	[more]
XP_022959284.1	1.9e-27	75.28	uncharacterized protein LOC111460313 [Cucurbita moschata]	[more]
KAG7013356.1	1.9e-27	75.28	hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6574776.1	9.3e-27	74.16	hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN46208.1	2.9e-20	72.09	hypothetical protein Csa_005039 [Cucumis sativus]	[more]

BLAST of Lcy01g006030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	1.2e-19	51.14	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	4.6e-16	68.75	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	1.5e-14	66.00	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 25..84 e-value: 8.4E-7 score: 30.4
None	No IPR available	PANTHER	PTHR33648:SF23	LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 2..87
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 2..87
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 35..77 e-value: 9.37034E-5 score: 34.7685

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g006030.1	Lcy01g006030.1	mRNA