Lcy01g005260 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g005260
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGATA transcription factor 16-like
LocationChr01: 7273410 .. 7279449 (-)
RNA-Seq ExpressionLcy01g005260
SyntenyLcy01g005260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGATCGGAGTTCAAGGACGCCGGAAAGTCGTCGTCGCCGGCGGAAAGTGAGCAGAATAAAAAGACCTGCGCCGATTGCGGCACGACGAAGACTCCTCTCTGGCGCGGAGGTCCGGCCGGCCCTAAGGTGATTTTTCATCTCCATCTCTCAACCTCGATCGAATATTCTGTTTTGTTCTCCATTTCTGTTGCTCGATTATAACGATCATAGCATTTTCCCCCCTCAGTCTCTTTGCAATGCGTGTGGAATCAGAGGCAGGAAAAAGAGAAGATCACTTCTAGGGTTAAACAGATCTTAAATCGTGAGGGACTCGTCGCCGACGCCGCTCCCTCTCCCTCTTCTTTATTTAAAAAAAAAAAAGGAGAAGAAAGGGAAGAGAAGAGAGAAGCAGAGAGAGAAAGAAAGAGGAAAAAAAATTCTGGTCGGCGACCGACGGCTGCCGGCCGGCCACCGGAGTTGGAGAAGAAGATGGTTGAGAAGAAGATGAGGGGAGAGGATGAATAAGAGAGAGAGGGGATAAAGAATTAAAAAAGAAAAGATAAAATAATAATATTTTATTATTTTTTATTTAAAAAAGTTAAAAAAAAATCATTTTTTTTATTAAAATAATAGTGCCACGTCAGCAACTGTTAAGATTTAACAGAAAAATAAACGGCAGGGACCAAAGTGTTACTTATCTCAAACCTCAGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAACTATAACTTAACCCAAACCTCAGGGACCAAAAATGTATTTTTCCCTAGTTTCAATTAGGTCTCTTTAATTTTAAAAGTTTCAATTTAGTTCCTAAAATTTAAGCTTAGTTTCACTTTAATCCCTATGATTTTAAAATTTTCAATTTGGTTCCTATGATTTTTGGTTAAATCTCATAAATCATTTCTAAATAGTTTTAACCCACCCAAAAAACCCATAAAAACTAAATTTGAATATTTAAGCTCATAAGGATCAAATTTGCAATTACAGTTTTTTCTCGGTTGGAAAAAACTTTTAGTCCCTAAACTTTGAAGAAAATAACAATTTAAGTCCATAAATTTTAGGTTGTAATAATTTAGTCCTTGTACTTTAAAATTTGTAATAGTTTTATCCGTACCATGAAAAATCTCATAAAAAATGTGCATAAATTTTTATTTTTTAACAACTTAGTTTTGGTAATTTATAATAAACACATTTGGTCTCTAATCGGTTCATCAATTTACATCGGTAAAAAATTCCATTAAATCTTAACAATATCTTTCACGATAGAGACTAAATTGTAACAATTTTTTTTTTTTTGAGTACATCAATATTTGGGGTGGAGGGATTGTAACAAAATTTTAAGTACATGAACTAAATTGTTAAATATTAAAGTTTGGGTTAAAAATTACTTTTAGTCCATAAACTTTCATGAAAATAACAATTTAATCAGTCAACTTTAGTTTGTAACTATTTAGTTTTTGTGCTTCTAATTTTGTAACAATTTAATCCTAACTTTAGTACGTAACAATTTAATCATTGTACAATAAAATTTGTAACGATTTAGTCTCTAACGTGAAAATTATTATTAAGATTTAATGAAATTTCTTACCTATGTAAATCGATGAACTAATTAAGAACCAAATGTGTCTATAAGCTACAAAAACTAAATCATAAAATAATAAAAATCAACATTTTAATTTTGATTGAATTCATCACATTAAAGACTAAAGTGTTACAAATTTGAAAGAGGACTAAACTATTACATACAAAACAAATACAAAGACGCCAACATAAGCATAGCTCAACTGGCACAAAAAACTTGTATTAAGGACCAAAGGTCTGTGGTTTAAATTCTCCACCACAATATGTCATAAAAAAATGACTAAATTGTCACTAAATAACAAAACTAAAAAACTTATATATTATTTCAGACTAAAGTTCTTTTTTTTTAGTTCATCAATATTTGGGGTGGGAGATTTGAATTTCTAAGGCCCCGTTTGATAACCATTTGGTTTTTGAAAATTAAACTTATACACACATACTTTCACCTATAAGTTTCTTGGTTTTAGTATCAATGTTTACCTTGTTTTCAAAAACAAAGTCCAATTTTGAAAAAAAAAAAAAAGGAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAAGTTACACTTTGATCCCTGAGTTTTCAAACTCAACAAAAATACCCCTGAGGTTTGAGATAAGGAGCAATTTGGTCCCTGTTATCCATTTTGCCGTTAAATCCTAACGGCAGCTGACGTGGCACTATTACTTTAATTAAAAAAATAATTTTTAAAATTTAAATAAAAATATTTTAAAATAATAAAAATCTTATTGTTTTATTATTTTTTTAAAATTCTTTCTCTCTCTTTCTTTCTTTTCCATCTTCTTTCTCCTTTCCATCTTCCCTCTCCATCTTCTTCTCTCCTTATCTCTTTCTTCTTTAGCTTCGATGGCCGGAATTTTTTTTCTTCTTTCTTATTCTTCCCTTCTTCTCCTTTATTTTCTTTCTTCTGTTTTTTTTTTTAAAACAGAGTTTCGGGGAGGAGGAGCTCTTCCTCCTCGATTCAGCGCCGGAATCGGGGGGAGGAGTTCCTCCTCCCCGAATCTCCCTTGTTGTTTTTTTTTTAAACAGAAGAAAGAAAAGAAAGGAGAAGAAGAGAAGGAGGGAAGAAGAGAAGGAAGGAAAAAAAAATTTTGGCCACCGCCGTTCGCCGGCGGCCGGCCGACCGGAGCTGAAGAAGAAGGAGATGAGGGAAGAAGATGGAAAGGAGGGAAGATAGAGATGAAAGTAAGAGAGGGAAAGAATTAAAAAAAATAAAATAATAATATTTATATTATTTTAATATATTTTTATTTAGAAAATTTAAAAAATATATTTTTTATTAAAATAATGATTCCACGTCACCAAATCTGTTAGGTTTTAACAGAAAAATGGGCTGCAGGGAACAAAGTGCTCCTTATTTCAAACCTCAGAGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAAGTGTAACTTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTCCAAAAAAAAAATAGTTTTCAAAAACTTGTTTTTGTTTTTAAAATTTGGCTAGAAATTTAAATGCAACCTCAACTAGGATGAAAGCCATGATAGGTAATTTTAGGAGAAAACAAATATAATTTTCAAAAACCAAAAACCAAAAATCAAATGGTTATCAAACGGAGGCTAACTTTTGATTGAAGATACATGTCAGTTATAGTTGAGATATGCTCGCTGTGGCAGATTAAAGTTTTGTAACATATTTTTTTTTCTATCATAAAAAAAAATACAAGGAAATGATAAATGCAAGAGTGGCATTTGGGTTGAGAACAGTTGATAAGATGAAGTCAGGCACATGTATTTTGGATAGCGATCCCAATCTTTTTCTTTCCCATTTCTCAATCTCTCTCTCTCTCTCTCTCTTTTTTAATTACAATATTCTTTTTTTCTTCATAATTTAATGATTTATGAACGAACAAACAACAACAACAATATGCTCTTCTCTCATAATCCAATTGGTTACAGCTGTTTCCACGATTTCTCTCTCTCTCTCTCTATCGGTTTTCCTTCCACTGCCCACTATTCCTCTCTTCTTTCCAACCCAACAGGGACCTTCATACTTGAAATCAGAGTAAAAATCCAACAAAATTTTACCTCAAATTCATCGCTTCCTTCCCTTTTTGCTCTTGTTTCTTCTGTAAATCAAAGGGTTATTACAATTTGTAGTGTCTACATACTACCCATCTCTTTCTTCTTTATTAGATTTAATCCATTCCACTGTTTGGTTTTGTGAGCAAAATTAAACAAAACCCCCCTTCCCCTTAAATTTCTCCGTCTATTTCGTGACAAATAATGCTGATTTCAGAGAGAGAAAAGGGTATTTTATAAACTTCTCTTACCGATTTGAGTGAGAGAGAGAGAGAATTAGGGAATTTCCTTTTCTGGGTTGGGTTTATTTTGGGGTTTGTGAGACGGCCTCGTGATCTGTGAACTCTCTGCGTGACATTCAAGACTTCTGTTCATATGGGGATTGGGTTCGGATTCAGGTTTTTTTAAGCTCCTTATTGGATCTGTGTTTGTTTGTTGGATGAACCCTTCTCGCAAAAACATTCATCCTTTCACATTTAGACAGAATTTTACACTTGGGATTTGATTTTGGGGGAAATGTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCAAGGATTCTGGCTGCTCTGCTTTCTGTGGAGCACTGCAGTACTGTTTCTACTTGGCTACTAATCACAAGGTGAGTATCACTCAAGTAATTGCTGTTTGGTATTTTTCTTGGGATTGGTTTATCTTTGTTGCCTTTGGGCTTTCTTTTGTGATGAATCTTCTTTCCTCTTGAATACTTTTTGTGGGTTGGTTGCTTTTTGTTAACTTTGCTTGTTGGAAATATTTGGTGGGTTTGTGTTGATGATTGTGAACTTGGCTTTGTTGAGTTGTTTTTGCTTCAATGAGTCCTTTAAGTGGATGAAAATGGATGGATTCACTCATATGTTTGCTTTGCTTGTTGTTTTTCCCAGTTGAATTTGTTTGTGTTTCATGCTTCTTCATTGTCTATCTTCAAATTCTCTATAGTTGTTTTAAGTGGCAGTAAATTTATGAGTAGTTTAGTTTCTGAGACTCAGTTCTTGGGAAATTTAAAAGCTATGCCTAGGCTTTGTTTGATAACAGTTCTGTTTTTTGTTTTATGTTTTTTAAAAAGTAGACTTATTTACTTTAAAGTTTCTTTGTTTTGTTTTTCAACTTTTCTAAAACACTTTTGAATATTTTAGTTTTTTTTTTTTTTTTTTTTTTTGGCTAGGTTTTTTGTCAATAAAACGTTTCTTAAAAGTGGACTACAAAATGAAGGAATTGTGAGTAATAAGCTTGAAGTAAAAAACTGGAAAATTGAATAGTTTTTAAGCATTCTTATTAAGTAAACTAAAATTTGAAGATTGGACATAGCTGTATGTAGCTCCCTACATTTCCTTTCCCATCTGCAATGTTAAATGCTTTTTGAAGTATTGAATAATTACTCATTTCATTCTTGAACTTTATCCTTAGGGTACAGTGAAGCAAAAAGAAAAAAGTGGACAAATCAATGTCAATTCTTAAGGACTAGCTACATTATGAAACACAAATATTTTTGTACTTGTTTAAAAAATCTGATGAAGCAGAGGAATGTTGGATATTTTTATTTGACATCGCCCCGAGTGCATATATTTGCCAAACGGAGAAACTTAGGGCTACTAGGATATTTCTTTTCTTGATTTTGTGTTATTGAGTTTACAAACAGTATTCTACGTGTTTTCTTGGCAATCAAATGTAGTAGGGTCAGACAATTGTGCCGTGAGATTAGTTGTGGTATGCTCTAGCTGGCTTGGAAACTCATGAATATTAAAAAAAGAAAAAGAAAAAGAAGAGTTTACAAACAGTATCTTAGAAACAGCAGAAATGGAAGAAAGTGTAAAACTCAATACATCTCACAAAGGGATGAGTTGATTACTAAAAGGCAAAGTAGCTTTAACCAAAACCAATTTTGGACTTGGTTCATTTTGATCTTAATATAGAAGTCAACTCAATATGCCTTTTTTCCTTCTACAAGTGTTCTCATTCTCATTGAGGTTTGGACTCAAGAATCTCCATGCTAAACAGGCTGTTTAATGCTCCAAAGATGATTTTTTATGGGTTAAGAATCTCACTTTCCTAGTGTTAAAGCATTTCTTATTCTCTACTATCATTGTTATGCCATGATATAAAACTTTATTCGGGATTCAGCTCATCGTCGTTTCTAAACTAGTTTCATTTGTCCATCAAATGGATCATGTTCAAGTCTTTTAACAAATTTATTTAATGTCCAAGTTATTGTCTTCCTATGTCATCTAAAGTCCAGATAGACCTAACGACATTACAGAAAGAAGGATTATCAAGCAATATGTAAGTTATTTTTGTTTCTGATGATTTTTTTTTTGTTGGTTCAGGATACTTGA

mRNA sequence

ATGTGGGGATCGGAGTTCAAGGACGCCGGAAAGTCGTCGTCGCCGGCGGAAAGTGAGCAGAATAAAAAGACCTGCGCCGATTGCGGCACGACGAAGACTCCTCTCTGGCGCGGAGGTCCGGCCGGCCCTAAGGATTCTGGCTGCTCTGCTTTCTGTGGAGCACTGCAGTACTGTTTCTACTTGGCTACTAATCACAAGGATACTTGA

Coding sequence (CDS)

ATGTGGGGATCGGAGTTCAAGGACGCCGGAAAGTCGTCGTCGCCGGCGGAAAGTGAGCAGAATAAAAAGACCTGCGCCGATTGCGGCACGACGAAGACTCCTCTCTGGCGCGGAGGTCCGGCCGGCCCTAAGGATTCTGGCTGCTCTGCTTTCTGTGGAGCACTGCAGTACTGTTTCTACTTGGCTACTAATCACAAGGATACTTGA

Protein sequence

MWGSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCGALQYCFYLATNHKDT
Homology
[Close]
BLAST of Lcy01g005260 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-07
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 22 KKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          KKTCADCGT+KTPLWRGGP GPK S C+A CG
Sbjct: 35 KKTCADCGTSKTPLWRGGPVGPK-SLCNA-CG 64

[Close]
BLAST of Lcy01g005260 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-06
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 12 SSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          S   + S   K+TC DCGT +TPLWRGGPAGPK S C+A CG
Sbjct: 31 SGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPK-SLCNA-CG 70

[Close]
BLAST of Lcy01g005260 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-06
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 7  KDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          ++   SSS       KK+CA CGT+KTPLWRGGPAGPK S C+A CG
Sbjct: 25 EEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPK-SLCNA-CG 69

[Close]
BLAST of Lcy01g005260 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 0 

Query: 23  KTCADCGTTKTPLWRGGPAGPKDSGCSAFCGALQ 57
           + C+DC TTKTPLWR GP GPK S C+A CG  Q
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPK-SLCNA-CGIRQ 207

[Close]
BLAST of Lcy01g005260 vs. ExPASy Swiss-Prot
Match: Q5HZ36 (GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 0 

Query: 23  KTCADCGTTKTPLWRGGPAGPKDSGCSAFCGALQ 57
           + C+DC TTKTPLWR GP GPK S C+A CG  Q
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPK-SLCNA-CGIRQ 261

[Close]
BLAST of Lcy01g005260 vs. ExPASy TrEMBL
Match: A0A5D3BXI1 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00160 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 3  GSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDAGK +SP ESEQNKKTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAGK-TSPMESEQNKKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 55

[Close]
BLAST of Lcy01g005260 vs. ExPASy TrEMBL
Match: A0A0A0KG76 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 3  GSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDAGK +SP ESEQNKKTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAGK-TSPMESEQNKKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 55

[Close]
BLAST of Lcy01g005260 vs. ExPASy TrEMBL
Match: A0A6J1CD73 (GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0 

Query: 3  GSEFKDAGKS---SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDAG+S   +SPAESEQN+KTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 59

[Close]
BLAST of Lcy01g005260 vs. ExPASy TrEMBL
Match: A0A1S3C8C2 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497809 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 3  GSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDAGK +SP ESEQNKKTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAGK-TSPMESEQNKKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 55

[Close]
BLAST of Lcy01g005260 vs. ExPASy TrEMBL
Match: A0A6J1KXU7 (GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111499182 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 3  GSEFKDAGKS---SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDA  S   SSPAESEQNKKTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAENSSRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 59

[Close]
BLAST of Lcy01g005260 vs. NCBI nr
Match: XP_038875288.1 (GATA transcription factor 16-like [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 3  GSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDAGK SSPAESEQNKKTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAGK-SSPAESEQNKKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 55

[Close]
BLAST of Lcy01g005260 vs. NCBI nr
Match: XP_008458384.1 (PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936.1 GATA transcription factor 16-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 3  GSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDAGK +SP ESEQNKKTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAGK-TSPMESEQNKKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 55

[Close]
BLAST of Lcy01g005260 vs. NCBI nr
Match: XP_022138518.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0 

Query: 3  GSEFKDAGKS---SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDAG+S   +SPAESEQN+KTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 59

[Close]
BLAST of Lcy01g005260 vs. NCBI nr
Match: XP_004150081.1 (GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein Csa_022928 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 3  GSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDAGK +SP ESEQNKKTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAGK-TSPMESEQNKKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 55

[Close]
BLAST of Lcy01g005260 vs. NCBI nr
Match: XP_023548663.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 3  GSEFKDAGKS---SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          GSEFKDA  S   SSPAESEQNKKTCADCGTTKTPLWRGGPAGPK S C+A CG
Sbjct: 8  GSEFKDAENSPRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPK-SLCNA-CG 59

[Close]
BLAST of Lcy01g005260 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 57.0 bits (136), Expect = 6.9e-09
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 8  DAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          D G  SS       KKTC DCGT++TPLWRGGPAGPK S C+A CG
Sbjct: 22 DNGNCSSSGSGGDTKKTCVDCGTSRTPLWRGGPAGPK-SLCNA-CG 65

[Close]
BLAST of Lcy01g005260 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-08
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 22 KKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          KKTCADCGT+KTPLWRGGP GPK S C+A CG
Sbjct: 35 KKTCADCGTSKTPLWRGGPVGPK-SLCNA-CG 64

[Close]
BLAST of Lcy01g005260 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 52.0 bits (123), Expect = 2.2e-07
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 12 SSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          S   + S   K+TC DCGT +TPLWRGGPAGPK S C+A CG
Sbjct: 31 SGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPK-SLCNA-CG 70

[Close]
BLAST of Lcy01g005260 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 7  KDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKDSGCSAFCG 54
          ++   SSS       KK+CA CGT+KTPLWRGGPAGPK S C+A CG
Sbjct: 25 EEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPK-SLCNA-CG 69

[Close]
BLAST of Lcy01g005260 vs. TAIR 10
Match: AT5G56860.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 0 

Query: 23  KTCADCGTTKTPLWRGGPAGPKDSGCSAFCGALQ 57
           + C+DC TTKTPLWR GP GPK S C+A CG  Q
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPK-SLCNA-CGIRQ 261

The following BLAST results are available for this feature:
BLAST of Lcy01g005260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJ104.8e-0781.25GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1[more]
Q9LIB53.1e-0661.90GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1[more]
Q8LG104.1e-0659.57GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2[more]
Q6YW481.3e-0464.71Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ... [more]
Q5HZ361.7e-0464.71GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2[more]
BLAST of Lcy01g005260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BXI16.1e-1386.27GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0KG766.1e-1386.27GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 P... [more]
A0A6J1CD736.1e-1381.48GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666... [more]
A0A1S3C8C26.1e-1386.27GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A6J1KXU71.8e-1283.33GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111499182 PE... [more]
BLAST of Lcy01g005260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875288.11.5e-1390.20GATA transcription factor 16-like [Benincasa hispida][more]
XP_008458384.11.3e-1286.27PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936... [more]
XP_022138518.11.3e-1281.48GATA transcription factor 16-like [Momordica charantia][more]
XP_004150081.11.3e-1286.27GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein ... [more]
XP_023548663.13.6e-1283.33GATA transcription factor 16-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lcy01g005260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16141.16.9e-0963.04GATA type zinc finger transcription factor family protein [more]
AT5G49300.13.4e-0881.25GATA transcription factor 16 [more]
AT3G16870.12.2e-0761.90GATA transcription factor 17 [more]
AT3G06740.12.9e-0759.57GATA transcription factor 15 [more]
AT5G56860.11.2e-0564.71GATA type zinc finger transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 16..61
e-value: 2.3E-9
score: 38.7
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 25..44
e-value: 8.1E-8
score: 31.7
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 19..42
score: 9.512443
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..28
NoneNo IPR availablePANTHERPTHR47172:SF13GATA TRANSCRIPTION FACTOR 15-LIKEcoord: 12..53
NoneNo IPR availablePANTHERPTHR47172OS01G0976800 PROTEINcoord: 12..53
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 21..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g005260.1Lcy01g005260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding