Lcy01g001690 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g001690
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLow-density receptor-like protein
LocationChr01: 1932800 .. 1933781 (+)
RNA-Seq ExpressionLcy01g001690
SyntenyLcy01g001690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACGAACCATTTCAACTGCATCGCGGGAATCTCTGAGCTCTGATAGATCACAGTCTCTGTTTCTCTCTGCAAGACAAAGCCACCGGAAACAATGGCGTCGTTGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGATCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGTCAGAACAAACAGACCGTGAAAGAAGGTGCGTTAATTTGATGTTAAATTTGTTTGCTTGTGCTCGTCTGAGCTTCGTATGGACTTTGAATTCGTCGTTCTGGACCTGCATTTCAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCCCGATGGAAAGAAGGCCGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGAAAATCTCAGTTATTTGAATTGTGATTAGTCCTGGAGAATTGAATGGTTTCACATGCATTAGTAAAGTTCAATCAGCGGATCTGGATTTTTTTTTTTCGTAATAACTTGTTATAATGACTGAAATAGCAACTATTGAATCAATTTAGTTAAAAGAAGATAAAGTAAGGTAAAGAAATCGTAATGCTTCAGCATTCCGCCTTCAGTTGCCATTATGTATTGTTAGTCACTCGGATATTGTGTATAGTGGTATTTGTACCTGAGACGTGGTAAACTACTACTTCCGAAAGACTTACTCTGACAAAAAATTAGATATTGCTAGTTTTTAATTTTCGCCTTCCTTCTGAACAAAACCAGATATGTATCTTAAATGAGCGAAGTTGACTGATATTGTGAACGAGAATTTATAGTTTAAGACTGAATATCTGGTAGAGGTGGAAATGCGTACATAAGATGATAAGAACTAGAGATGGCAGCAGTCGTCTGTGATGGTTTTTGTTACTGTGACTTGTAAATCGGGGATTC

mRNA sequence

GAACGAACCATTTCAACTGCATCGCGGGAATCTCTGAGCTCTGATAGATCACAGTCTCTGTTTCTCTCTGCAAGACAAAGCCACCGGAAACAATGGCGTCGTTGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGATCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGTCAGAACAAACAGACCGTGAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCCCGATGGAAAGAAGGCCGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGAAAATCTCAGTTATTTGAATTGTGATTAGTCCTGGAGAATTGAATGGTTTCACATGCATTAGTAAAGTTCAATCAGCGGATCTGGATTTTTTTTTTTCGTAATAACTTGTTATAATGACTGAAATAGCAACTATTGAATCAATTTAGTTAAAAGAAGATAAAGTAAGGTAAAGAAATCGTAATGCTTCAGCATTCCGCCTTCAGTTGCCATTATGTATTGTTAGTCACTCGGATATTGTGTATAGTGGTATTTGTACCTGAGACGTGGTAAACTACTACTTCCGAAAGACTTACTCTGACAAAAAATTAGATATTGCTAGTTTTTAATTTTCGCCTTCCTTCTGAACAAAACCAGATATGTATCTTAAATGAGCGAAGTTGACTGATATTGTGAACGAGAATTTATAGTTTAAGACTGAATATCTGGTAGAGGTGGAAATGCGTACATAAGATGATAAGAACTAGAGATGGCAGCAGTCGTCTGTGATGGTTTTTGTTACTGTGACTTGTAAATCGGGGATTC

Coding sequence (CDS)

ATGGCGTCGTTGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGATCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGTCAGAACAAACAGACCGTGAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCCCGATGGAAAGAAGGCCGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGA

Protein sequence

MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVPDGKKAGSVAARRLLHQVS
Homology
[Close]
BLAST of Lcy01g001690 vs. ExPASy TrEMBL
Match: A0A1S3C994 (uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS TA+ITFRV+MVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVP---DGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]
BLAST of Lcy01g001690 vs. ExPASy TrEMBL
Match: A0A1S3C7I8 (uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS TA+ITFRV+MVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVP---DGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVA RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQM 94

[Close]
BLAST of Lcy01g001690 vs. ExPASy TrEMBL
Match: A0A6J1EUV5 (uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.3e-36
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS  ARITFRVVMVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGV---PDGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]
BLAST of Lcy01g001690 vs. ExPASy TrEMBL
Match: A0A6J1CA23 (uncharacterized protein LOC111009689 OS=Momordica charantia OX=3673 GN=LOC111009689 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.9e-36
Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS T RITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTGRITFRVLMVVLLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVPDGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV D KK GSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVHDEKKVGSVATRRLLHQV 91

[Close]
BLAST of Lcy01g001690 vs. ExPASy TrEMBL
Match: A0A6J1EWN5 (uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.9e-36
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS  ARITFRVVMVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGV---PDGKKAGSVAARRLLHQVS 93
          SVGWYHDESDSGV    DGKKAGSVAARRLLHQ++
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQMA 95

[Close]
BLAST of Lcy01g001690 vs. NCBI nr
Match: KAG6593936.1 (hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-36
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS  ARITFRVVMVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGV---PDGKKAGSVAARRLLHQVS 93
          SVGWYHDESDSGV    DGKKAGSVAARRLLHQVS
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQVS 95

[Close]
BLAST of Lcy01g001690 vs. NCBI nr
Match: XP_008458514.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS TA+ITFRV+MVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVP---DGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]
BLAST of Lcy01g001690 vs. NCBI nr
Match: XP_008458516.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 8.4e-36
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS TA+ITFRV+MVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVP---DGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVA RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQM 94

[Close]
BLAST of Lcy01g001690 vs. NCBI nr
Match: XP_022930338.1 (uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS  ARITFRVVMVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGV---PDGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]
BLAST of Lcy01g001690 vs. NCBI nr
Match: XP_022138556.1 (uncharacterized protein LOC111009689 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = 0 

Query: 1  MASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MAS T RITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTGRITFRVLMVVLLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVPDGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV D KK GSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVHDEKKVGSVATRRLLHQV 91

[Close]
BLAST of Lcy01g001690 vs. TAIR 10
Match: AT5G18850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-28
Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 0 

Query: 2  ASLTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T RI FR V+++ L++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVPDG--KKAGSVAARRLL 89
          VGWYHDESDSG  +G  KK+G   +RRLL
Sbjct: 66 VGWYHDESDSGFREGHNKKSGIAVSRRLL 94

The following BLAST results are available for this feature:
BLAST of Lcy01g001690 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g001690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C9941.8e-3691.49uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C7I84.0e-3690.43uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1EUV55.3e-3689.36uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1CA236.9e-3690.11uncharacterized protein LOC111009689 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1EWN56.9e-3688.42uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Lcy01g001690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593936.12.9e-3690.53hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008458514.13.7e-3691.49PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo][more]
XP_008458516.18.4e-3690.43PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo][more]
XP_022930338.11.1e-3589.36uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata][more]
XP_022138556.11.4e-3590.11uncharacterized protein LOC111009689 [Momordica charantia][more]
BLAST of Lcy01g001690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G18850.13.1e-2868.54unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g001690.1Lcy01g001690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane