Lag0042181 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042181
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr13: 38038702 .. 38039538 (+)
RNA-Seq ExpressionLag0042181
SyntenyLag0042181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAACATGGAGTCGATGCTCAAGTTAACCCACAGAATCATGGAAGGGAGCAAAATGGTGGGAGAGTGCCACCAGTACCTCCAGTTCCATCGGTGCCACAACAAGAAAATCCAATTTATATTGTTGAAGACCGCAATAGAGCAATAAGGGACTATGCCTTACCTGTTTTTCAGACTTTAAATCCAGGAATTTTGGAGCCACCGATAGATGCTCCATAGTTTGAACTAAAACTAGTGATGTTCCAAATGTGGAATACCATGGGCCAATTCTCTGGACTTCCAAATGAGGATCCACATAAACACATTAAGCTATTTTTTAGAGTTTGCAATTTTTTTAAAGTTACAGGAGTGCCTGAAGATACTTTGAAGCTAAAGCTTTTTCCATTTTCTTTGCAAGGAGATGTTGAAGCTTGGTTGGACTCATTCCCTCCAAACTCCATCACTTCTTGAAACGATTTGGTTGAGAAATTTTTAGAGGAGTTTTTTCCTTCTAATAAGAATGCCAAATATAGAGCTGAAATTATTGCATTTAGAAAATCTTACAATGAACCTTTGGATGGAACCTGGGAGAGATTCCAGAGGCTGGTTTGGAAGTGTCCACATCACGGATTGCCAGCTTGCATCATCTTAGAGCATTTTTATAGCGAATTGGATCAAGCTTCGAAGGCACTAGTCAACGCATCTGCAAACGGATCTTTCTTAAAGAAGTCTGCAAATGAGGCACATGCTATCTTGGACACCATAGCCACAAACAATAGACATTGGGGAGAAAGATCCGTTGACGTAGAGCTTGAAGTCTTGGAGCACAATCTCTCAAGTAGTGTTTTGGTATGA

mRNA sequence

ATGGAACAACATGGAGTCGATGCTCAAGTTAACCCACAGAATCATGGAAGGGAGCAAAATGGTGGGAGAGTGCCACCAGTACCTCCAGTTCCATCGGTGCCACAACAAGAAAATCCAATTTATATTGTTGAAGACCGCAATAGAGCAATAAGGGACTATGCCTTACCTGTTTTTCAGACTTTAAATCCAGGAATTTTGGAGCCACCGATAGATGCTCCATACGAATTGGATCAAGCTTCGAAGGCACTAGTCAACGCATCTGCAAACGGATCTTTCTTAAAGAAGTCTGCAAATGAGGCACATGCTATCTTGGACACCATAGCCACAAACAATAGACATTGGGGAGAAAGATCCGTTGACGTAGAGCTTGAAGTCTTGGAGCACAATCTCTCAAGTAGTGTTTTGGTATGA

Coding sequence (CDS)

ATGGAACAACATGGAGTCGATGCTCAAGTTAACCCACAGAATCATGGAAGGGAGCAAAATGGTGGGAGAGTGCCACCAGTACCTCCAGTTCCATCGGTGCCACAACAAGAAAATCCAATTTATATTGTTGAAGACCGCAATAGAGCAATAAGGGACTATGCCTTACCTGTTTTTCAGACTTTAAATCCAGGAATTTTGGAGCCACCGATAGATGCTCCATACGAATTGGATCAAGCTTCGAAGGCACTAGTCAACGCATCTGCAAACGGATCTTTCTTAAAGAAGTCTGCAAATGAGGCACATGCTATCTTGGACACCATAGCCACAAACAATAGACATTGGGGAGAAAGATCCGTTGACGTAGAGCTTGAAGTCTTGGAGCACAATCTCTCAAGTAGTGTTTTGGTATGA

Protein sequence

MEQHGVDAQVNPQNHGREQNGGRVPPVPPVPSVPQQENPIYIVEDRNRAIRDYALPVFQTLNPGILEPPIDAPYELDQASKALVNASANGSFLKKSANEAHAILDTIATNNRHWGERSVDVELEVLEHNLSSSVLV
Homology
BLAST of Lag0042181 vs. NCBI nr
Match: XP_030505532.1 (uncharacterized protein LOC115720524 [Cannabis sativa])

HSP 1 Score: 74.3 bits (181), Expect = 8.9e-10
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 45  DRNRAIRDYALPVFQTLNPGILEPPIDAPY------ELDQASKALVNASANGSFLKKSAN 104
           DR RAIR+YA P+F  LNPGI+   I AP        L+ AS+ +++ASANG+ L KS N
Sbjct: 66  DRARAIREYAAPMFNELNPGIVRLEIQAPQMETFYNGLNAASRMVLDASANGAILSKSYN 125

Query: 105 EAHAILDTIATNNRHW 115
           EA  IL+TIA+NN  W
Sbjct: 126 EAFEILETIASNNYQW 141

BLAST of Lag0042181 vs. NCBI nr
Match: XP_030477908.1 (uncharacterized protein LOC115694945 [Cannabis sativa])

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-09
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 34  PQQENPIYIVEDRNRAIRDYALPVFQTLNPGILEPPIDAPYELDQASKALVNASANGSFL 93
           PQ  NP+ + +DR RAIR+YA P+F  LNP               AS+ +++ASANG+ L
Sbjct: 12  PQIANPVMLADDRARAIREYAAPMFNELNP---------------ASRMVLDASANGAIL 71

Query: 94  KKSANEAHAILDTIATNNRHW 115
            KS NEA  IL+TIA+NN  W
Sbjct: 72  SKSYNEAFEILETIASNNYQW 77

BLAST of Lag0042181 vs. NCBI nr
Match: XP_015389623.1 (uncharacterized protein LOC107178680 [Citrus sinensis])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 43/122 (35.25%), Postives = 62/122 (50.82%), Query Frame = 0

Query: 1   MEQHGVDAQVNPQNHGREQNGGRVPPVPPVPSVPQQENPIYIVEDRNRAIRDYALPVFQT 60
           +  HG     N Q    E   GR              N IY+ ++R+RAIRDY +   Q 
Sbjct: 44  LNPHGPLQPANIQEEHNEYANGR---------QAGNNNIIYMADNRDRAIRDYVVLTPQV 103

Query: 61  LNPGILEPPIDAP--------YELDQASKALVNASANGSFLKKSANEAHAILDTIATNNR 115
           ++PGI+ P +DA         +++ Q  + +V+ASANG+ L KS  EA+ IL+ IA NN 
Sbjct: 104 VHPGIIRPEVDAANFELKSVMFQILQTVRLMVDASANGAPLSKSYTEAYEILERIANNNY 156

BLAST of Lag0042181 vs. NCBI nr
Match: XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 42/117 (35.90%), Postives = 56/117 (47.86%), Query Frame = 0

Query: 38  NPIYIVEDRNRAIRDYALPVFQTLNPGIL---------------EPPIDA---------- 97
           NPI + +DR RAIR+YA P+F  LNP +                E   DA          
Sbjct: 16  NPIILADDRARAIREYAAPMFNELNPALNAKFEVRSCLFKELEDESTSDAWERFKELLRK 75

Query: 98  -PYE--------------LDQASKALVNASANGSFLKKSANEAHAILDTIATNNRHW 115
            P+               L+ AS+ +++ASANG+ L KS NEA  IL+TIA+NN  W
Sbjct: 76  CPHHGIPHCIQMETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQW 132

BLAST of Lag0042181 vs. NCBI nr
Match: XP_015389226.1 (uncharacterized protein LOC107178482 [Citrus sinensis])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-04
Identity = 36/113 (31.86%), Postives = 55/113 (48.67%), Query Frame = 0

Query: 42  IVEDRNRAIRDYALPVFQTLNPGILEPPIDA--------------------------PY- 101
           + +DR+RAIRDYA+   Q ++PGI+ P ++A                          P+ 
Sbjct: 1   MADDRDRAIRDYAVLTPQVVHPGIVRPEVEAANFELKPMMFQMLQTLGQFNGLPTEDPHL 60

Query: 102 -------------ELDQASKALVNASANGSFLKKSANEAHAILDTIATNNRHW 115
                        EL+ +++ +V+ASANG+ L KS  EA+ IL+ IA NN  W
Sbjct: 61  HLKLFLELETFYNELNPSTRLMVDASANGALLSKSYTEAYEILERIANNNYQW 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030505532.18.9e-1052.63uncharacterized protein LOC115720524 [Cannabis sativa][more]
XP_030477908.14.4e-0946.91uncharacterized protein LOC115694945 [Cannabis sativa][more]
XP_015389623.11.1e-0735.25uncharacterized protein LOC107178680 [Citrus sinensis][more]
XP_030509265.11.3e-0535.90uncharacterized protein LOC115723943 [Cannabis sativa][more]
XP_015389226.12.5e-0431.86uncharacterized protein LOC107178482 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042181.1Lag0042181.1mRNA