Lag0042144 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0042144
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription initiation factor TFIID subunit 5
Location	chr13: 37259634 .. 37260657 (-)
RNA-Seq Expression	Lag0042144
Synteny	Lag0042144

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCTTACAAGCGCTCGATGCTCAAGTTCTCATTGGTTTAGCAGCGACCCTGCTAGCCATTGTTGCTGGTGTTGTTGTCCTCTTTTCCTCCAGAAAATCCGCCTCTCGAGGTATCATCCCCACTTCTGATTTGATTCTTGGAAAAGAAAATATAGGTTCTCTATTTGCTGGTTTTGGTTTATTGGGTGTTTTGAACTCTCTGCCCAGTTTGAAGTTGTGATGGTCTGATGTTTTGGTTCATGGGTTGTAATGATTTTGGACTGTGATTTATTCTCCCTTAATGTTTTTATGAATGTATGGCATGTTGAAGTGTTAATATGGTATAAGGCAGGAAGTCTTCTGCTCGACCTTTGGCCATTTTTCTCTCCAATTAATATTCATCGTTCAAATTTCTGACCTCACAAGTGGAGGAGAGTGTTAAAGTATAAATATAAAATTGCAGTTTTCCCTGGTCAGCCTAGCTCAATATCTGATGATGCTGAACTTGTGACACTCACGGGAAACACCCAGGACACTGCAAGTCAGATAAATCAAAAAGAAGTCCAATGGGGTGTGTGTTGGCAAAGCTACCAACTTACTTAGCCTATAAGTTCTATCTTTCTGGATGATTATTATATTGCTTGGTTGTTGCCTTTTCTATTATTATTTTGTTGATAGGGTGTGACATCTATGCTCTTTTTATTGATTTGAAACATCGAAAGATGTTTTTCAATTTTCTCTGAAAGTTGAAAAAATTATGTCAAAATGCAACGTTCTCTATGTGTTGTTTATGGGTTTTCTTGTATCCCTTATTCTTCCTTTCTTTCATTTGAATTCTTGCTGATTTGATATCTTCTTCAATTTCAAATCCTTGACTGTTATATTTAAAATTATGCTGGTAATAGTTACTTGAAGATTCTTTAGAAGAACGCTTGGAGAAAGCCGCTGGTTTGCTCTCAGATTCTGAAAAGGCTGAGGGAGAAACGAAGGATGGTGATGTAGATGAGAATAAGGTACCTGTGCTGATCCAGTGCTTCTGA

mRNA sequence

ATGGAGATCTTACAAGCGCTCGATGCTCAAGTTCTCATTGGTTTAGCAGCGACCCTGCTAGCCATTGTTGCTGGTGTTGTTGTCCTCTTTTCCTCCAGAAAATCCGCCTCTCGAGTTTTCCCTGGTCAGCCTAGCTCAATATCTGATGATGCTGAACTTGTGACACTCACGGGAAACACCCAGGACACTGCAAGTCAGATAAATCAAAAAGAAGTCCAATGGGGTTTACTTGAAGATTCTTTAGAAGAACGCTTGGAGAAAGCCGCTGGTTTGCTCTCAGATTCTGAAAAGGCTGAGGGAGAAACGAAGGATGGTGATGTAGATGAGAATAAGGTACCTGTGCTGATCCAGTGCTTCTGA

Coding sequence (CDS)

ATGGAGATCTTACAAGCGCTCGATGCTCAAGTTCTCATTGGTTTAGCAGCGACCCTGCTAGCCATTGTTGCTGGTGTTGTTGTCCTCTTTTCCTCCAGAAAATCCGCCTCTCGAGTTTTCCCTGGTCAGCCTAGCTCAATATCTGATGATGCTGAACTTGTGACACTCACGGGAAACACCCAGGACACTGCAAGTCAGATAAATCAAAAAGAAGTCCAATGGGGTTTACTTGAAGATTCTTTAGAAGAACGCTTGGAGAAAGCCGCTGGTTTGCTCTCAGATTCTGAAAAGGCTGAGGGAGAAACGAAGGATGGTGATGTAGATGAGAATAAGGTACCTGTGCTGATCCAGTGCTTCTGA

Protein sequence

MEILQALDAQVLIGLAATLLAIVAGVVVLFSSRKSASRVFPGQPSSISDDAELVTLTGNTQDTASQINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENKVPVLIQCF

Homology

[Close]

BLAST of Lag0042144 vs. NCBI nr
Match: XP_022133497.1 (transcription initiation factor TFIID subunit 5 [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 2.4e-27
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MEILQALDAQVLIGLAATLLAIVAGVVVLFSSRKSASRVFPGQPSSISDDAELVTLTGNT 60
           ++I Q     +L  L  T   ++ G++    + +   +VFPGQPSSISDDAE+VTLTG T
Sbjct: 158 IKICQYSYEMLLQYLHKTQTTVILGII----NERINFQVFPGQPSSISDDAEIVTLTGGT 217

Query: 61  QDTASQINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 112
           QDTA+QINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGD+DENK
Sbjct: 218 QDTANQINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDIDENK 264

[Close]

BLAST of Lag0042144 vs. NCBI nr
Match: XP_004145505.1 (transcription initiation factor TFIID subunit 5 isoform X1 [Cucumis sativus] >KGN55438.1 hypothetical protein Csa_011930 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 9.2e-27
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MEILQALDAQVLIGLAATLLAIVAGVVVLFSSRKSASRVFPGQPSSISDDAELVTLTGNT 60
           ++I Q     +L  L  T   ++ G++    + +   +VFPGQPSSISDDAELVTLTG+T
Sbjct: 158 IKICQYSYEMLLQYLHKTQTTVILGII----NERINFQVFPGQPSSISDDAELVTLTGST 217

Query: 61  QDTASQINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 112
           QDTA+QIN+KEV WGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK
Sbjct: 218 QDTANQINKKEVHWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 264

[Close]

BLAST of Lag0042144 vs. NCBI nr
Match: KAA0064589.1 (transcription initiation factor TFIID subunit 5 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 9.2e-27
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MEILQALDAQVLIGLAATLLAIVAGVVVLFSSRKSASRVFPGQPSSISDDAELVTLTGNT 60
           ++I Q     +L  L  T   ++ G++    + +   +VFPGQPSSISDDAELVTLTG+T
Sbjct: 163 IKICQYSYEMLLQYLHKTQTTVILGII----NERINFQVFPGQPSSISDDAELVTLTGST 222

Query: 61  QDTASQINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 112
           QDTA+QIN+KEV WGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK
Sbjct: 223 QDTANQINKKEVHWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 269

[Close]

BLAST of Lag0042144 vs. NCBI nr
Match: TYK20000.1 (transcription initiation factor TFIID subunit 5 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 9.2e-27
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MEILQALDAQVLIGLAATLLAIVAGVVVLFSSRKSASRVFPGQPSSISDDAELVTLTGNT 60
           ++I Q     +L  L  T   ++ G++    + +   +VFPGQPSSISDDAELVTLTG+T
Sbjct: 158 IKICQYSYEMLLQYLHKTQTTVILGII----NERINFQVFPGQPSSISDDAELVTLTGST 217

Query: 61  QDTASQINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 112
           QDTA+QIN+KEV WGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK
Sbjct: 218 QDTANQINKKEVHWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 264

[Close]

BLAST of Lag0042144 vs. NCBI nr
Match: XP_031740017.1 (transcription initiation factor TFIID subunit 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 9.2e-27
Identity = 75/111 (67.57%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MEILQALDAQVLIGLAATLLAIVAGVVVLFSSRKSASRVFPGQPSSISDDAELVTLTGNT 60
           ++I Q     +L  L  T   ++ G++    + +   +VFPGQPSSISDDAELVTLTG+T
Sbjct: 59  IKICQYSYEMLLQYLHKTQTTVILGII----NERINFQVFPGQPSSISDDAELVTLTGST 118

Query: 61  QDTASQINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 112
           QDTA+QIN+KEV WGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK
Sbjct: 119 QDTANQINKKEVHWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDVDENK 165

[Close]

BLAST of Lag0042144 vs. ExPASy Swiss-Prot
Match: Q6S7B0 (Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana OX=3702 GN=TAF5 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-22
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 38  RVFPGQPSSISDDAELVTLTGNTQDTASQINQKEVQWGLLEDSLEERLEKAAGLLSDSEK 97
           +V+ GQP+S SDD E VT+ G+ QDTA+ INQKE+QWGLLEDSLE+RLEK  GLLSDSEK
Sbjct: 193 QVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRLEKTGGLLSDSEK 252

Query: 98  AEGETKDGDVDENK 112
            +GE+KDGD D++K
Sbjct: 253 GQGESKDGDADDSK 266

The following BLAST results are available for this feature:

BLAST of Lag0042144 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133497.1	2.4e-27	67.57	transcription initiation factor TFIID subunit 5 [Momordica charantia]	[more]
XP_004145505.1	9.2e-27	67.57	transcription initiation factor TFIID subunit 5 isoform X1 [Cucumis sativus] >KG...	[more]
KAA0064589.1	9.2e-27	67.57	transcription initiation factor TFIID subunit 5 [Cucumis melo var. makuwa]	[more]
TYK20000.1	9.2e-27	67.57	transcription initiation factor TFIID subunit 5 [Cucumis melo var. makuwa]	[more]
XP_031740017.1	9.2e-27	67.57	transcription initiation factor TFIID subunit 5 isoform X2 [Cucumis sativus]	[more]

BLAST of Lag0042144 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6S7B0	2.4e-22	68.92	Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana OX=3702 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0042144.1	Lag0042144.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003743	translation initiation factor activity