Lag0042129 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042129
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr13: 36888682 .. 36889146 (+)
RNA-Seq ExpressionLag0042129
SyntenyLag0042129
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCGGAGTGGGAGGGGGTGCTGCAGAATATTCAGGCAAACTCTATGCTGAATCTTCTTAGGGATGTGAAGGATAGGGTCGACTGGGCTAAGTTTGAAGAGCTTGTGGTGGTGTTGTGGGCGGTGTGGTGTTGTCGAAACCAACAGAAGTTTAGGGGGCGGGCTCCCTCAGCAGGGCTTGTGGATTGGGCGGCGAACTATCTGGCTGTTTTCCGAGGGGCCTCCCAGACGTATGGTGGGGGAGGTGGAGGGGTGCTTCGGAGTGCAGCTAAATGGTCCCCACCGGAGGAAGGATGGTATAAGGCAAACGTGGATGCTGCTACTGTGGGGACCTGTCTCGAGCGGGTGTTGGAGTTGTTGTTCGGGATGAGGCGGGGCGAGTCATGCTGTCAGCTTCTGTTAGTCATGACCATGTGGGGAGTTCAGATTTGGCAGAGGGTCAAGCGGTGGTGGACGGAATGA

mRNA sequence

ATGGGATCGGAGTGGGAGGGGGTGCTGCAGAATATTCAGGCAAACTCTATGCTGAATCTTCTTAGGGATGTGAAGGATAGGGTCGACTGGGCTAAGTTTGAAGAGCTTGTGGTGGTGTTGTGGGCGGTGTGGTGTTGTCGAAACCAACAGAAGTTTAGGGGGCGGGCTCCCTCAGCAGGGCTTGTGGATTGGGCGGCGAACTATCTGGCTGTTTTCCGAGGGGCCTCCCAGACGTATGGTGGGGGAGGTGGAGGGGTGCTTCGGAGTGCAGCTAAATGGTCCCCACCGGAGGAAGGATGGTATAAGGCAAACGTGGATGCTGCTACTGTGGGGACCTGTCTCGAGCGGGTGTTGGAGTTGTTGTTCGGGATGAGGCGGGGCGAGTCATGCTGTCAGCTTCTGTTAGTCATGACCATGTGGGGAGTTCAGATTTGGCAGAGGGTCAAGCGGTGGTGGACGGAATGA

Coding sequence (CDS)

ATGGGATCGGAGTGGGAGGGGGTGCTGCAGAATATTCAGGCAAACTCTATGCTGAATCTTCTTAGGGATGTGAAGGATAGGGTCGACTGGGCTAAGTTTGAAGAGCTTGTGGTGGTGTTGTGGGCGGTGTGGTGTTGTCGAAACCAACAGAAGTTTAGGGGGCGGGCTCCCTCAGCAGGGCTTGTGGATTGGGCGGCGAACTATCTGGCTGTTTTCCGAGGGGCCTCCCAGACGTATGGTGGGGGAGGTGGAGGGGTGCTTCGGAGTGCAGCTAAATGGTCCCCACCGGAGGAAGGATGGTATAAGGCAAACGTGGATGCTGCTACTGTGGGGACCTGTCTCGAGCGGGTGTTGGAGTTGTTGTTCGGGATGAGGCGGGGCGAGTCATGCTGTCAGCTTCTGTTAGTCATGACCATGTGGGGAGTTCAGATTTGGCAGAGGGTCAAGCGGTGGTGGACGGAATGA

Protein sequence

MGSEWEGVLQNIQANSMLNLLRDVKDRVDWAKFEELVVVLWAVWCCRNQQKFRGRAPSAGLVDWAANYLAVFRGASQTYGGGGGGVLRSAAKWSPPEEGWYKANVDAATVGTCLERVLELLFGMRRGESCCQLLLVMTMWGVQIWQRVKRWWTE
Homology
BLAST of Lag0042129 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-07
Identity = 35/105 (33.33%), Postives = 52/105 (49.52%), Query Frame = 0

Query: 17  MLNLLRDVKDRVDWAKFEELVVVLWAVWCCRNQQKF-RGRAPSAGLVDWAANYLAVFRGA 76
           M+N+LRD +D ++W  FEELVV LW++W  RN   F + R     L  W + Y+A F+  
Sbjct: 1   MINILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKAT 60

Query: 77  SQTYGGGGGGVLRSAAK------------WSPPEEGWYKANVDAA 109
           +  +      V +S  +            W P EEG +K   DA+
Sbjct: 61  NTNHATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDAS 105

BLAST of Lag0042129 vs. NCBI nr
Match: XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-06
Identity = 36/91 (39.56%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 26  DRVDWAKFEELVVVLWAVWCCRNQQKFRGRAP--SAGLVDWAANYLAVFRGASQ------ 85
           DR+ W   EEL V LWA+W  RNQ  F          +VDW A+YL V++ A +      
Sbjct: 2   DRIKWTGLEELSVFLWAIWNARNQSMFTNGHGFLLVNMVDWVADYLQVYQSAQEGPSLPL 61

Query: 86  TYGGGGGGVLRSAAKWSPPEEGWYKANVDAA 109
              G GG V    + W PP   ++K NVDAA
Sbjct: 62  LLDGRGGRV----SAWCPPLAPFFKVNVDAA 88

BLAST of Lag0042129 vs. NCBI nr
Match: XP_023875178.1 (uncharacterized protein LOC111987686 [Quercus suber])

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-06
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 0

Query: 35  ELVVVLWAVWCCRNQQKFRG-RAPSAGLVDWAANYLAVFRGASQTYGGGGGGVLRSAAKW 94
           + V + WA+W  RN+ ++ G R     L+ WA++YL  +  A       G  V R AA W
Sbjct: 200 QAVSIAWALWHNRNELRYGGVRKSGQQLIRWASDYLREYTSA-VAQNAPGVLVPRQAAFW 259

Query: 95  SPPEEGWYKANVDAATVGTCLERVLELLFGMRRG 128
           SPP+ G +K NVD A  G      L LLFGM +G
Sbjct: 260 SPPQNGHFKINVDGAVFGHRERWELGLLFGMIKG 292

BLAST of Lag0042129 vs. NCBI nr
Match: XP_022135916.1 (uncharacterized protein LOC111007754 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-05
Identity = 34/108 (31.48%), Postives = 54/108 (50.00%), Query Frame = 0

Query: 14  ANSMLNLLRDVKDRVDWAKFEELVVVLWAVWCCRNQQKFRGRAPS--AGLVDWAANYLAV 73
           +++ML+ +R  K  + WA  E L+V+LW++WC RN+      A     G+  W+ NYL++
Sbjct: 22  SSAMLDFIRGWKVLIPWADLELLLVMLWSIWCARNRSISVSHAGGLLEGIRAWSDNYLSI 81

Query: 74  FRGAS-----------QTYGGGGGGVLRSAAKWSPPEEGWYKANVDAA 109
           ++ A            Q + GG          W+PP   + K NVDAA
Sbjct: 82  YKQAQGVSLHEVDQPRQLWAGG----------WNPPLNPFLKVNVDAA 119

BLAST of Lag0042129 vs. NCBI nr
Match: XP_030941604.1 (uncharacterized protein LOC115966525 [Quercus lobata])

HSP 1 Score: 57.8 bits (138), Expect = 9.8e-05
Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 36  LVVVLWAVWCCRNQQKFRG-RAPSAGLVDWAANYLAVFRGASQTYGGGGGGVLRSAAKWS 95
           ++ + WA+W  RN+ +  G R    GLV  A  YLA + GA+       G V+    KW+
Sbjct: 54  VITIAWALWNNRNEMQNGGERKSGQGLVQLAMEYLAKY-GAAMELTDSVGPVVELPVKWT 113

Query: 96  PPEEGWYKANVDAA 109
           PP EGW+K NVD A
Sbjct: 114 PPREGWFKINVDGA 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139684.18.0e-0733.33uncharacterized protein LOC111010533 [Momordica charantia][more]
XP_022135942.13.0e-0639.56uncharacterized protein LOC111007775 [Momordica charantia][more]
XP_023875178.15.2e-0639.36uncharacterized protein LOC111987686 [Quercus suber][more]
XP_022135916.12.6e-0531.48uncharacterized protein LOC111007754 [Momordica charantia][more]
XP_030941604.19.8e-0540.54uncharacterized protein LOC115966525 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042129.1Lag0042129.1mRNA