Lag0042071 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042071
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLeucine-rich repeat extensin-like protein 2
Locationchr13: 35921913 .. 35922350 (-)
RNA-Seq ExpressionLag0042071
SyntenyLag0042071
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAAGAACAAGAAGCGAAAGAAAATCCACAATCACAATCCCTACCTTTTCCCTCCACCGCCGTGCCACTGCTGCAGTTGCCCCTGCTCCTCCGCAACCGCAATCCAGCCCTCTGCTCCGCCACTTCCGCCATGGCTAGACGATCGGACATTTCCGCCATCTTCAACGCAATCGGAACATCCTGAGGAAGCCGAAATCGCAGCGCCGCTCGTGGCCGATCCGTCGTACCAGCAATACATGGCTCCGAATCCGGTCTACGGAGTTCCGATGATCGTGCAAAGCGGTTGCAGAAGAGAGAGATCGTTCGCTAGTTTCGGATGTGTTGGTGATTTGGGAATTAGGTTAATCCGATGCTTCTGTCCCTGTTTTCGCATTCGAGAAGCTTATTACATACGCCAGTAA

mRNA sequence

ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAAGAACAAGAAGCGAAAGAAAATCCACAATCACAATCCCTACCTTTTCCCTCCACCGCCGTGCCACTGCTGCAGTTGCCCCTGCTCCTCCGCAACCGCAATCCAGCCCTCTGCTCCGCCACTTCCGCCATGGCTAGACGATCGGACATTTCCGCCATCTTCAACGCAATCGGAACATCCTGAGGAAGCCGAAATCGCAGCGCCGCTCGTGGCCGATCCGTCGTACCAGCAATACATGGCTCCGAATCCGGTCTACGGAGTTCCGATGATCGTGCAAAGCGGTTGCAGAAGAGAGAGATCGTTCGCTAGTTTCGGATGTGTTGGTGATTTGGGAATTAGGTTAATCCGATGCTTCTGTCCCTGTTTTCGCATTCGAGAAGCTTATTACATACGCCAGTAA

Coding sequence (CDS)

ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAAGAACAAGAAGCGAAAGAAAATCCACAATCACAATCCCTACCTTTTCCCTCCACCGCCGTGCCACTGCTGCAGTTGCCCCTGCTCCTCCGCAACCGCAATCCAGCCCTCTGCTCCGCCACTTCCGCCATGGCTAGACGATCGGACATTTCCGCCATCTTCAACGCAATCGGAACATCCTGAGGAAGCCGAAATCGCAGCGCCGCTCGTGGCCGATCCGTCGTACCAGCAATACATGGCTCCGAATCCGGTCTACGGAGTTCCGATGATCGTGCAAAGCGGTTGCAGAAGAGAGAGATCGTTCGCTAGTTTCGGATGTGTTGGTGATTTGGGAATTAGGTTAATCCGATGCTTCTGTCCCTGTTTTCGCATTCGAGAAGCTTATTACATACGCCAGTAA

Protein sequence

MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPCHCCSCPCSSATAIQPSAPPLPPWLDDRTFPPSSTQSEHPEEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGCRRERSFASFGCVGDLGIRLIRCFCPCFRIREAYYIRQ
Homology
BLAST of Lag0042071 vs. NCBI nr
Match: XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 9.7e-47
Identity = 104/144 (72.22%), Postives = 114/144 (79.17%), Query Frame = 0

Query: 1   MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPCHCCSCPCSSATAIQPSAPPLPPWLDD 60
           MLKAAKKKLKFWS++KKRKKI N N +   PPPCHCC+C CSS  AIQPSAPPLPPWLDD
Sbjct: 1   MLKAAKKKLKFWSRSKKRKKIPNPNDF---PPPCHCCTCHCSS--AIQPSAPPLPPWLDD 60

Query: 61  RTFPPSSTQSEHPEEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGCRRE----RSFAS 120
           R FPP    SEHPEEAEIAAPLVA P YQ YM P+PVYGVP+IVQ+  RR+    R FA 
Sbjct: 61  RIFPP----SEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAV 120

Query: 121 FGCVGDLGIRLIRCFCPCFRIREA 141
            GCVG+LGIR+I CFCPCFR  EA
Sbjct: 121 SGCVGELGIRIIGCFCPCFRTPEA 135

BLAST of Lag0042071 vs. NCBI nr
Match: KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.2 bits (500), Expect = 9.7e-47
Identity = 104/145 (71.72%), Postives = 115/145 (79.31%), Query Frame = 0

Query: 1   MLKAAKKKLKFWSKNKKRKKIHNHNPYL-FPPPPCHCCSCPCSSATAIQPSAPPLPPWLD 60
           MLKAAKKKLKFWS++KKRKKI + N +   PPPPCHCC+C CSS  AIQPSAPPLPPWLD
Sbjct: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSS--AIQPSAPPLPPWLD 60

Query: 61  DRTFPPSSTQSEHPEEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGCRRE----RSFA 120
           DR FPP     EHPEEAEIAAPLVA P YQQYM P+PVYGVP+IVQ+  RR+    R FA
Sbjct: 61  DRIFPP----PEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFA 120

Query: 121 SFGCVGDLGIRLIRCFCPCFRIREA 141
             GCVGDLGIR+I CFCPCFR  +A
Sbjct: 121 VSGCVGDLGIRIIGCFCPCFRTPKA 139

BLAST of Lag0042071 vs. NCBI nr
Match: XP_022155153.1 (uncharacterized protein LOC111022295 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 5.4e-29
Identity = 85/144 (59.03%), Postives = 99/144 (68.75%), Query Frame = 0

Query: 1   MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPCHCCSCPCSSATAIQPSAPPLPPWLDD 60
           MLKAA KKLKFWSK+KKR+K  + + YL PPPP + CSC C S +AI+PSAPPLPPWLDD
Sbjct: 1   MLKAA-KKLKFWSKDKKRRKTRD-SSYLPPPPPPY-CSCSC-SYSAIRPSAPPLPPWLDD 60

Query: 61  RTFPPSSTQSEHPEEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGCR-RERSFASFGC 120
           RT      QSE P     A  + A  SYQQY APNPVYG+P++     R RERS  +   
Sbjct: 61  RTL---LLQSEPP----AATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFT--- 120

Query: 121 VGDLGIRLIRCFCPCFRIREAYYI 144
             DLG RLIRCFCPC  +REAYY+
Sbjct: 121 --DLGARLIRCFCPCLHVREAYYL 128

BLAST of Lag0042071 vs. NCBI nr
Match: XP_021639535.1 (uncharacterized protein LOC110634721 [Hevea brasiliensis])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 81/162 (50.00%), Postives = 94/162 (58.02%), Query Frame = 0

Query: 1   MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPCHCCSCPCSSATAIQPSAPPLPPWL-D 60
           M+KA KK  KFW + K+RKK H   PY  PPPPCHCC   CS +T +QPSAPPLPPWL  
Sbjct: 1   MIKAVKKLKKFWPRKKRRKKTH-QEPYYLPPPPCHCC---CSYSTPVQPSAPPLPPWLVP 60

Query: 61  DRTFPPSST-------------QSEHPEEAEIAAPLVADP---------SYQQYMAPNPV 120
           D+T    +              Q + P +  +     A P         SYQQY  PNPV
Sbjct: 61  DQTNETITAPGVQHLPEVGYQGQIQFPSQEIVVETNPACPTLPIETTQLSYQQYTVPNPV 120

Query: 121 YGVPMIVQSGCRRERSFASFGCVGDLGIRLIRCFCPCFRIRE 140
           YGVP +VQ+  RRERS   FGCV   G+ LIRCFCPCFRIRE
Sbjct: 121 YGVP-VVQTP-RRERSAGFFGCVISFGVNLIRCFCPCFRIRE 156

BLAST of Lag0042071 vs. NCBI nr
Match: KAE8007888.1 (hypothetical protein FH972_004447 [Carpinus fangiana])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27
Identity = 78/166 (46.99%), Postives = 96/166 (57.83%), Query Frame = 0

Query: 1   MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPCHCCSCPCSSATAIQPSAPPLPPWLD- 60
           M+KA  KKLKFWS+ K++KK    +PY  PPPPCHC      S  + QPSAPPLPPWLD 
Sbjct: 3   MMKAV-KKLKFWSRKKRKKK--TQDPYYLPPPPCHC----YHSCYSTQPSAPPLPPWLDL 62

Query: 61  ----DRTFPPSSTQS----EHPEEAEI---------AAPL---------VADPSYQQYMA 120
               D+  P  + Q      +P +A +          +P+         V+ PSYQQYMA
Sbjct: 63  EQTHDQAIPEPALQPVPDLSYPNQARVPSIQEVVTETSPIMYPTLPDAAVSTPSYQQYMA 122

Query: 121 PNPVYGVPMIVQSGCRRERSFASFGCVGDLGIRLIRCFCPCFRIRE 140
           PNPVYG+P++V    RRER    FGCV + GI L RCFCPC  IRE
Sbjct: 123 PNPVYGIPVVVGETARRERRAGFFGCVVNFGIHLFRCFCPCLSIRE 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022933064.19.7e-4772.22uncharacterized protein LOC111439771 [Cucurbita moschata][more]
KAG6601672.19.7e-4771.72hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022155153.15.4e-2959.03uncharacterized protein LOC111022295 [Momordica charantia][more]
XP_021639535.11.0e-2750.00uncharacterized protein LOC110634721 [Hevea brasiliensis][more]
KAE8007888.11.3e-2746.99hypothetical protein FH972_004447 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042071.1Lag0042071.1mRNA