Lag0041311 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041311
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposase
Locationchr13: 15431245 .. 15431616 (-)
RNA-Seq ExpressionLag0041311
SyntenyLag0041311
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGTCATGGATGAACAAAGATAGGTTGTCAGATGAATATAGCATAGGTGTAGAGAACTTCATTGAAAATGGATTACGTCATGCAAAAGGGTCGAATTTCATGTGGTGTCCATGCTTAAACTGTGGAAATGCACTCAAACAAGATGCTAACATAGTTAGAGACCACATGTATATCCATGGCATTGATAAGAGTTATAATATATGGATTTGGCATGGTGAAGAATTACCTATAAGAGATAAGGATGAAAACGACCCTACTTGTGGTGGTGAGGACTTTACTGAAAGTGATGATATAAGAAACACCACTAAGTCGTTCAAAAAAGTGACAAAGGAAATCAGAAAGAAAAAACAAAATCGTCGTGCCTGA

mRNA sequence

ATGGATAAGTCATGGATGAACAAAGATAGGTTGTCAGATGAATATAGCATAGGTGTAGAGAACTTCATTGAAAATGGATTACGTCATGCAAAAGGGTCGAATTTCATGTGGTGTCCATGCTTAAACTGTGGAAATGCACTCAAACAAGATGCTAACATAGTTAGAGACCACATGTATATCCATGGCATTGATAAGAGTTATAATATATGGATTTGGCATGGTGAAGAATTACCTATAAGAGATAAGGATGAAAACGACCCTACTTGTGGTGGTGAGGACTTTACTGAAAGTGATGATATAAGAAACACCACTAAGTCGTTCAAAAAAGTGACAAAGGAAATCAGAAAGAAAAAACAAAATCGTCGTGCCTGA

Coding sequence (CDS)

ATGGATAAGTCATGGATGAACAAAGATAGGTTGTCAGATGAATATAGCATAGGTGTAGAGAACTTCATTGAAAATGGATTACGTCATGCAAAAGGGTCGAATTTCATGTGGTGTCCATGCTTAAACTGTGGAAATGCACTCAAACAAGATGCTAACATAGTTAGAGACCACATGTATATCCATGGCATTGATAAGAGTTATAATATATGGATTTGGCATGGTGAAGAATTACCTATAAGAGATAAGGATGAAAACGACCCTACTTGTGGTGGTGAGGACTTTACTGAAAGTGATGATATAAGAAACACCACTAAGTCGTTCAAAAAAGTGACAAAGGAAATCAGAAAGAAAAAACAAAATCGTCGTGCCTGA

Protein sequence

MDKSWMNKDRLSDEYSIGVENFIENGLRHAKGSNFMWCPCLNCGNALKQDANIVRDHMYIHGIDKSYNIWIWHGEELPIRDKDENDPTCGGEDFTESDDIRNTTKSFKKVTKEIRKKKQNRRA
Homology
BLAST of Lag0041311 vs. NCBI nr
Match: XP_022145911.1 (uncharacterized protein LOC111015258 [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 4.4e-32
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 0

Query: 11  LSDEYSIGVENFIENGLRHAKGSNFMWCPCLNCGNALKQDANIVRDHMYIHGIDKSYNIW 70
           +S EY++GVENFIENGLRH+KGSN +WCPCLNC NA+ Q+ NIVR+H+ I+GIDKSY IW
Sbjct: 1   MSVEYNLGVENFIENGLRHSKGSNCIWCPCLNCANAVLQELNIVREHLSIYGIDKSYKIW 60

Query: 71  IWHGEELPIRDKDENDPTCGGEDFTESDDIRNTTKSFKKVTKEIRKKKQN 121
           IWHGE+LP++DKDE+  T G ED+ + D I+NTT  FK        K +N
Sbjct: 61  IWHGEQLPMKDKDESGTTKGKEDY-DDDGIKNTTNMFKAAQDYFSNKSEN 109

BLAST of Lag0041311 vs. NCBI nr
Match: XP_022150919.1 (uncharacterized protein LOC111018955 [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-25
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 0

Query: 2   DKSWMNKDRLSDEYSIGVENFIENGLRHAKGSNFMWCPCLNCGNALKQDANIVRDHMYIH 61
           DKSWM K+R+  EYSIGVE FIENGLRH+K SN + CPCL C NA  Q  N+VRDH++++
Sbjct: 14  DKSWMTKNRMLTEYSIGVEMFIENGLRHSKRSNVICCPCLKCVNAKSQHVNVVRDHLFVY 73

Query: 62  GIDKSYNIWIWHGEELPIRDKDENDPTCGGEDFTESDDIRNTTKSFK 109
           GID+SY  WIWHGE + I+   E+  T   E   E DD  +T   F+
Sbjct: 74  GIDQSYKTWIWHGESISIKRNIESMSTSAQEQ-VEDDDFDDTIGMFE 119

BLAST of Lag0041311 vs. NCBI nr
Match: XP_022148697.1 (uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148699.1 uncharacterized protein LOC111017298 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 0

Query: 1   MDKSWMNKDRLSDEYSIGVENFIENGLRHAKGSNFMWCPCLNCGNALKQDANIVRDHMYI 60
           MDKSWM K RLS EY +GVE FI+ G RHAKGS F+ CPCL CGN + + +  +RDH+YI
Sbjct: 103 MDKSWMGKSRLSKEYDLGVEMFIKFGERHAKGSTFIRCPCLKCGNRVPRSSRDIRDHLYI 162

Query: 61  HGIDKSYNIWIWHGEEL--PIRDKDENDPTCGG-EDFTESDDIRNTTKSFK 109
           HGID+SY  W WHGEEL   +  K+  +      E+ +E D++ N TK  K
Sbjct: 163 HGIDQSYKTWFWHGEELSDELEGKEVGENMDNSLEEESEGDELDNITKMVK 213

BLAST of Lag0041311 vs. NCBI nr
Match: TYK20367.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MDKSWMNKDRLSDEYSIGVENFIENGLRHAKGSNFMWCPCLNCGNALKQDANIVRDHMYI 60
           MDKSWM ++R+S EY +GVE+FI+ GL HAKGSN + CPCL CGN L +D +IVR H+Y 
Sbjct: 1   MDKSWMMENRMSTEYDVGVESFIQFGLSHAKGSNSIRCPCLKCGNRLLKDVSIVRYHLYA 60

Query: 61  HGIDKSYNIWIWHGEELPIRDKDENDPTCGGEDFTESDDIRNT 104
           +GIDKSY IW WHGE+L            G E + E DD+ NT
Sbjct: 61  NGIDKSYKIWFWHGEDLNSETVTSKMENLGDEKY-EHDDLFNT 102

BLAST of Lag0041311 vs. NCBI nr
Match: TYK04159.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 3.4e-24
Identity = 58/113 (51.33%), Postives = 73/113 (64.60%), Query Frame = 0

Query: 1   MDKSWMNKDRLSDEYSIGVENFIENGLRHAKGSNFMWCPCLNCGNALKQDANIVRDHMYI 60
           MDKSWM ++R+S EY +GVE+FI+ GL HAKGSN + CPCL CGN L +D +IVR H+Y 
Sbjct: 1   MDKSWMMENRMSREYDVGVESFIQFGLSHAKGSNSIRCPCLKCGNRLLKDVSIVRYHLYA 60

Query: 61  HGIDKSYNIWIWHGEELPIRDKDENDPTCGGEDFTESDDIRNTTKSFKKVTKE 114
           +GIDKSY IW WHGE+L            G E + E DD+ NT    +    E
Sbjct: 61  NGIDKSYKIWFWHGEDLNSETVTSKMENLGDEKY-EHDDLFNTVNMLQSAHDE 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145911.14.4e-3260.91uncharacterized protein LOC111015258 [Momordica charantia][more]
XP_022150919.14.0e-2554.21uncharacterized protein LOC111018955 [Momordica charantia][more]
XP_022148697.12.0e-2452.25uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncha... [more]
TYK20367.12.0e-2455.34transposase [Cucumis melo var. makuwa][more]
TYK04159.13.4e-2451.33transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..123
NoneNo IPR availablePANTHERPTHR10775:SF149TRANSPOSASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..85
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 1..85
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 3..75
e-value: 2.3E-20
score: 72.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041311.1Lag0041311.1mRNA