Lag0041131 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041131
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUDP-3-O-acyl-N-acetylglucosamine deacetylase
Locationchr13: 12537293 .. 12537936 (-)
RNA-Seq ExpressionLag0041131
SyntenyLag0041131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCATTCCCGCCGCATTCAACGCCCTCAAATCCTCAAGGTCAATATCTTGGTTGCCGGTACTCTCTCTCTCTCTCTCTCTCGCCATTGAAATGGTGCTTATTTGAGAACAAAAAAACTGCCGAAAACAATTGAATGGAAGGTGGTTTTGTACGGGAATGTTCATTACCCAATTTGTAGTTTTGGTATTCACTGGTGCAATCATTATTGGTTGCCGCTTTGCTTCCTTTTTTTTTTTGTTGTGTAGACGGGTAGGCTTCAGCAAACCTTGGCGGGATGTCTGGAGCTGAGTGGGATATCTCTGCACTCGGGGAAGGTTTCGAAAGTGAAGTTATGTCCGGAATTTGCAGGCAGAGGGAGGTATTTTGATTTTAGGTCCAACTTCATTCCTGTGTCGATTGATTATGCCGAGGAGTCGCCTCTGTGTACCACGCTCTCTAAGGATGGGTTTAAAGTTCGAACGGTTGAGCATTTGCTTTCTGCACTGGAGGCTATGGGGGTTGACAATTGCAGGATCGAGATAGAAAATGTAGATGCTAAAGATAGTGAAGTCGAGGTATTTCGTGACCAGGACCTTGAATTCATTTTTCTCATTGTTTGCGAAGGTCTAGTTTATGTCGTATTGATTACTCTGTACGCCTGA

mRNA sequence

ATGTTCATTCCCGCCGCATTCAACGCCCTCAAATCCTCAAGGTCAATATCTTGGTTGCCGACGGGTAGGCTTCAGCAAACCTTGGCGGGATGTCTGGAGCTGAGTGGGATATCTCTGCACTCGGGGAAGGTTTCGAAAGTGAAGTTATGTCCGGAATTTGCAGGCAGAGGGAGGTATTTTGATTTTAGGTCCAACTTCATTCCTGTGTCGATTGATTATGCCGAGGAGTCGCCTCTGTGTACCACGCTCTCTAAGGATGGGTTTAAAGTTCGAACGGTTGAGCATTTGCTTTCTGCACTGGAGGCTATGGGGGTTGACAATTGCAGGATCGAGATAGAAAATGTAGATGCTAAAGATAGTGAAGTCGAGGTATTTCGTGACCAGGACCTTGAATTCATTTTTCTCATTGTTTGCGAAGGTCTAGTTTATGTCGTATTGATTACTCTGTACGCCTGA

Coding sequence (CDS)

ATGTTCATTCCCGCCGCATTCAACGCCCTCAAATCCTCAAGGTCAATATCTTGGTTGCCGACGGGTAGGCTTCAGCAAACCTTGGCGGGATGTCTGGAGCTGAGTGGGATATCTCTGCACTCGGGGAAGGTTTCGAAAGTGAAGTTATGTCCGGAATTTGCAGGCAGAGGGAGGTATTTTGATTTTAGGTCCAACTTCATTCCTGTGTCGATTGATTATGCCGAGGAGTCGCCTCTGTGTACCACGCTCTCTAAGGATGGGTTTAAAGTTCGAACGGTTGAGCATTTGCTTTCTGCACTGGAGGCTATGGGGGTTGACAATTGCAGGATCGAGATAGAAAATGTAGATGCTAAAGATAGTGAAGTCGAGGTATTTCGTGACCAGGACCTTGAATTCATTTTTCTCATTGTTTGCGAAGGTCTAGTTTATGTCGTATTGATTACTCTGTACGCCTGA

Protein sequence

MFIPAAFNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFRSNFIPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDSEVEVFRDQDLEFIFLIVCEGLVYVVLITLYA
Homology
[Close]
BLAST of Lag0041131 vs. NCBI nr
Match: XP_008452403.1 (PREDICTED: probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X3 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 9.8e-58
Identity = 113/124 (91.13%), Postives = 118/124 (95.16%), Query Frame = 0 

Query: 1   MFIPAAFNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF 60
           M IP AF+ALKSSRSISW PTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF
Sbjct: 1   MIIPTAFHALKSSRSISWSPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF 60

Query: 61  DFRSNFIPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDS 120
           DF+SNFIP SIDYAE+SPLCTTLSKDGFK+RTVEHLLSA+EAMGVDNCRIEI N DAKDS
Sbjct: 61  DFKSNFIPASIDYAEDSPLCTTLSKDGFKIRTVEHLLSAMEAMGVDNCRIEITNEDAKDS 120

Query: 121 EVEV 125
           EVEV
Sbjct: 121 EVEV 124

[Close]
BLAST of Lag0041131 vs. NCBI nr
Match: XP_008452401.1 (PREDICTED: probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X1 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 9.8e-58
Identity = 113/124 (91.13%), Postives = 118/124 (95.16%), Query Frame = 0 

Query: 1   MFIPAAFNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF 60
           M IP AF+ALKSSRSISW PTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF
Sbjct: 1   MIIPTAFHALKSSRSISWSPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF 60

Query: 61  DFRSNFIPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDS 120
           DF+SNFIP SIDYAE+SPLCTTLSKDGFK+RTVEHLLSA+EAMGVDNCRIEI N DAKDS
Sbjct: 61  DFKSNFIPASIDYAEDSPLCTTLSKDGFKIRTVEHLLSAMEAMGVDNCRIEITNEDAKDS 120

Query: 121 EVEV 125
           EVEV
Sbjct: 121 EVEV 124

[Close]
BLAST of Lag0041131 vs. NCBI nr
Match: XP_008452402.1 (PREDICTED: probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X2 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 9.8e-58
Identity = 113/124 (91.13%), Postives = 118/124 (95.16%), Query Frame = 0 

Query: 1   MFIPAAFNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF 60
           M IP AF+ALKSSRSISW PTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF
Sbjct: 1   MIIPTAFHALKSSRSISWSPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF 60

Query: 61  DFRSNFIPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDS 120
           DF+SNFIP SIDYAE+SPLCTTLSKDGFK+RTVEHLLSA+EAMGVDNCRIEI N DAKDS
Sbjct: 61  DFKSNFIPASIDYAEDSPLCTTLSKDGFKIRTVEHLLSAMEAMGVDNCRIEITNEDAKDS 120

Query: 121 EVEV 125
           EVEV
Sbjct: 121 EVEV 124

[Close]
BLAST of Lag0041131 vs. NCBI nr
Match: XP_031741868.1 (probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial isoform X4 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 4.8e-57
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 0 

Query: 1   MFIPAAFNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF 60
           M +P AFNALKSSRSISW PTGRLQQTLAGCLELSGISLHSGKV+KVKLCPEFAGRGRYF
Sbjct: 1   MLVPTAFNALKSSRSISWSPTGRLQQTLAGCLELSGISLHSGKVAKVKLCPEFAGRGRYF 60

Query: 61  DFRSNFIPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDS 120
           DF+SNFIP SIDYAE+SPLCTTLSKDGFK+RTVEHLLSA+EAMGVDNCRI I N DAKDS
Sbjct: 61  DFKSNFIPASIDYAEDSPLCTTLSKDGFKIRTVEHLLSAMEAMGVDNCRIVITNEDAKDS 120

Query: 121 EVEV 125
           EVEV
Sbjct: 121 EVEV 124

[Close]
BLAST of Lag0041131 vs. NCBI nr
Match: XP_031741866.1 (probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial isoform X2 [Cucumis sativus] >KAE8648248.1 hypothetical protein Csa_018507 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 4.8e-57
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 0 

Query: 1   MFIPAAFNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYF 60
           M +P AFNALKSSRSISW PTGRLQQTLAGCLELSGISLHSGKV+KVKLCPEFAGRGRYF
Sbjct: 1   MLVPTAFNALKSSRSISWSPTGRLQQTLAGCLELSGISLHSGKVAKVKLCPEFAGRGRYF 60

Query: 61  DFRSNFIPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDS 120
           DF+SNFIP SIDYAE+SPLCTTLSKDGFK+RTVEHLLSA+EAMGVDNCRI I N DAKDS
Sbjct: 61  DFKSNFIPASIDYAEDSPLCTTLSKDGFKIRTVEHLLSAMEAMGVDNCRIVITNEDAKDS 120

Query: 121 EVEV 125
           EVEV
Sbjct: 121 EVEV 124

[Close]
BLAST of Lag0041131 vs. ExPASy Swiss-Prot
Match: F4IAT8 (Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXC1 PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-38
Identity = 78/118 (66.10%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 7   FNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFRSNF 66
           +++  SS ++S  P+GRLQQTLAG +E+ G SLHSGK S VKL PE AG GR+F+FRS F
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDSEVEV 125
           IP SI++A+ESPLCTTL KD  K+RTVEHLLSALEA GVDNCRI+IE+  + D EVEV
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVEV 138

[Close]
BLAST of Lag0041131 vs. ExPASy Swiss-Prot
Match: P0DKB7 (Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXC2 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-38
Identity = 78/118 (66.10%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 7   FNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFRSNF 66
           +++  SS ++S  P+GRLQQTLAG +E+ G SLHSGK S VKL PE AG GR+F+FRS F
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDSEVEV 125
           IP SI++A+ESPLCTTL KD  K+RTVEHLLSALEA GVDNCRI+IE+  + D EVEV
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVEV 138

[Close]
BLAST of Lag0041131 vs. ExPASy Swiss-Prot
Match: P0DKB8 (Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXC3 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-38
Identity = 78/118 (66.10%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 7   FNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFRSNF 66
           +++  SS ++S  P+GRLQQTLAG +E+ G SLHSGK S VKL PE AG GR+F+FRS F
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDSEVEV 125
           IP SI++A+ESPLCTTL KD  K+RTVEHLLSALEA GVDNCRI+IE+  + D EVEV
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVEV 138

[Close]
BLAST of Lag0041131 vs. ExPASy Swiss-Prot
Match: P0DKB9 (Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXC4 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-38
Identity = 78/118 (66.10%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 7   FNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFRSNF 66
           +++  SS ++S  P+GRLQQTLAG +E+ G SLHSGK S VKL PE AG GR+F+FRS F
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDSEVEV 125
           IP SI++A+ESPLCTTL KD  K+RTVEHLLSALEA GVDNCRI+IE+  + D EVEV
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVEV 138

[Close]
BLAST of Lag0041131 vs. ExPASy Swiss-Prot
Match: F4IAW1 (Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXC5 PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-38
Identity = 78/118 (66.10%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 7   FNALKSSRSISWLPTGRLQQTLAGCLELSGISLHSGKVSKVKLCPEFAGRGRYFDFRSNF 66
           +++  SS ++S  P+GRLQQTLAG +E+ G SLHSGK S VKL PE AG GR+F+FRS F
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPVSIDYAEESPLCTTLSKDGFKVRTVEHLLSALEAMGVDNCRIEIENVDAKDSEVEV 125
           IP SI++A+ESPLCTTL KD  K+RTVEHLLSALEA GVDNCRI+IE+  + D EVEV
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVEV 138

The following BLAST results are available for this feature:
BLAST of Lag0041131 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452403.19.8e-5891.13PREDICTED: probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X3 [C... [more]
XP_008452401.19.8e-5891.13PREDICTED: probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X1 [C... [more]
XP_008452402.19.8e-5891.13PREDICTED: probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X2 [C... [more]
XP_031741868.14.8e-5789.52probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial isoform X... [more]
XP_031741866.14.8e-5789.52probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial isoform X... [more]
BLAST of Lag0041131 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4IAT83.1e-3866.10Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial OS=Arabid... [more]
P0DKB73.1e-3866.10Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial OS=Arabid... [more]
P0DKB83.1e-3866.10Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 3, mitochondrial OS=Arabid... [more]
P0DKB93.1e-3866.10Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 4, mitochondrial OS=Arabid... [more]
F4IAW13.1e-3866.10Probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 5, mitochondrial OS=Arabid... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004463UDP-3-O-acyl N-acetylglucosamine deacetylasePFAMPF03331LpxCcoord: 25..115
e-value: 1.4E-24
score: 87.1
IPR004463UDP-3-O-acyl N-acetylglucosamine deacetylasePANTHERPTHR33694UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATEDcoord: 1..141
IPR015870UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminalGENE3D3.30.230.20lpxc deacetylase, domain 1coord: 23..144
e-value: 4.4E-32
score: 112.5
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 24..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041131.1Lag0041131.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009245 lipid A biosynthetic process
biological_process GO:2001289 lipid X metabolic process
cellular_component GO:0005739 mitochondrion
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
molecular_function GO:0103117 UDP-3-O-acyl-N-acetylglucosamine deacetylase activity