Lag0041117 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATCAACTCGTATTATTATTGCTCGGACTCTTATTCTTCGTTGTGTCCCGGCCAACGAACGCAAGCGATGATGTAAGTCGACCAAATGAATCTCTCATTCAGGTGAGCAAATATCGCGTAGAAATTCACAATGAATTGATATATACATTGGATAGTCATTGCTTCTCAAAGGATGACGATTTGGGATTGCATATACTTTCTCCAAATCAGCAACAAGATTGGTCTTTCAGTATTAATTATTTTGGAACAACTTTGTTCCATTGTAGATTGGAATGGCAAAGAGGGTTTATAGAGTTTGATGCATTTTTTGTTGATCAAGATTTCGTTCGTGAATTTTGTCCCAACTTTTTGTGTGTTTGGTTGGCCAAACATGATGGGCTTTACATGGTGAATGCAACTGGTCAGCAAGTTCTTAACCAGTATTGGGAACTGCTTCGTCGGTGGCCCTAA ATGCATCAACTCGTATTATTATTGCTCGGACTCTTATTCTTCGTTGTGTCCCGGCCAACGAACGCAAGCGATGATGTAAGTCGACCAAATGAATCTCTCATTCAGGTGAGCAAATATCGCGTAGAAATTCACAATGAATTGATATATACATTGGATAGTCATTGCTTCTCAAAGGATGACGATTTGGGATTGCATATACTTTCTCCAAATCAGCAACAAGATTGGTCTTTCAGTATTAATTATTTTGGAACAACTTTGTTCCATTGTAGATTGGAATGGCAAAGAGGGTTTATAGAGTTTGATGCATTTTTTGTTGATCAAGATTTCGTTCGTGAATTTTGTCCCAACTTTTTGTGTGTTTGGTTGGCCAAACATGATGGGCTTTACATGGTGAATGCAACTGGTCAGCAAGTTCTTAACCAGTATTGGGAACTGCTTCGTCGGTGGCCCTAA ATGCATCAACTCGTATTATTATTGCTCGGACTCTTATTCTTCGTTGTGTCCCGGCCAACGAACGCAAGCGATGATGTAAGTCGACCAAATGAATCTCTCATTCAGGTGAGCAAATATCGCGTAGAAATTCACAATGAATTGATATATACATTGGATAGTCATTGCTTCTCAAAGGATGACGATTTGGGATTGCATATACTTTCTCCAAATCAGCAACAAGATTGGTCTTTCAGTATTAATTATTTTGGAACAACTTTGTTCCATTGTAGATTGGAATGGCAAAGAGGGTTTATAGAGTTTGATGCATTTTTTGTTGATCAAGATTTCGTTCGTGAATTTTGTCCCAACTTTTTGTGTGTTTGGTTGGCCAAACATGATGGGCTTTACATGGTGAATGCAACTGGTCAGCAAGTTCTTAACCAGTATTGGGAACTGCTTCGTCGGTGGCCCTAA MHQLVLLLLGLLFFVVSRPTNASDDVSRPNESLIQVSKYRVEIHNELIYTLDSHCFSKDDDLGLHILSPNQQQDWSFSINYFGTTLFHCRLEWQRGFIEFDAFFVDQDFVREFCPNFLCVWLAKHDGLYMVNATGQQVLNQYWELLRRWP Homology
BLAST of Lag0041117 vs. NCBI nr
Match: KAG7031483.1 (S-protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 184.1 bits (466), Expect = 8.8e-43 Identity = 87/150 (58.00%), Postives = 109/150 (72.67%), Query Frame = 0
BLAST of Lag0041117 vs. NCBI nr
Match: XP_023546939.1 (S-protein homolog 74-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 178.7 bits (452), Expect = 3.7e-41 Identity = 80/129 (62.02%), Postives = 97/129 (75.19%), Query Frame = 0
BLAST of Lag0041117 vs. NCBI nr
Match: KAG6600849.1 (S-protein-like 74, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 176.8 bits (447), Expect = 1.4e-40 Identity = 78/129 (60.47%), Postives = 96/129 (74.42%), Query Frame = 0
BLAST of Lag0041117 vs. NCBI nr
Match: KAE8648168.1 (hypothetical protein Csa_018354 [Cucumis sativus]) HSP 1 Score: 160.6 bits (405), Expect = 1.0e-35 Identity = 66/97 (68.04%), Postives = 81/97 (83.51%), Query Frame = 0
BLAST of Lag0041117 vs. NCBI nr
Match: KAE8648167.1 (hypothetical protein Csa_018435 [Cucumis sativus]) HSP 1 Score: 157.9 bits (398), Expect = 6.8e-35 Identity = 72/149 (48.32%), Postives = 103/149 (69.13%), Query Frame = 0
BLAST of Lag0041117 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.1e-11 Identity = 45/132 (34.09%), Postives = 66/132 (50.00%), Query Frame = 0
BLAST of Lag0041117 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 9.2e-11 Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 0
BLAST of Lag0041117 vs. ExPASy Swiss-Prot
Match: P0DN92 (S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 9.2e-11 Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 0
BLAST of Lag0041117 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.5e-10 Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 0
BLAST of Lag0041117 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 7.8e-10 Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|