Lag0040971 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040971
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOB domain-containing protein
Locationchr13: 10408470 .. 10409854 (+)
RNA-Seq ExpressionLag0040971
SyntenyLag0040971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGTATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGTTCTTCTTCTTCTTCCCTTCCTTAATTCGGTATTTTTCGGGTTTCGGGTTTTGGGTTTCGAGTATTTTTCCTGTTGTTTCATTGAAGAATTGTGATACTTAGGATATGACAGAACTTCAAACAAGTTAGAGTTTTCGTCAACATCTTTATTGATATAAAACTTTTAATCCATCGGAGCTTAATTAATATGGAATTTTCAAAATGTCATTCAAACCTAAAACAATGGATTTGTTTCTCTAGTGTTCTTGTTCTTGTCAACATCTTTGTTGGTACAAAGTTTTTTAAAACATGTAAATACAACGAATAAAACATCACAAGTCTAAAACTCGAGTTTTATTTCTGATTTCTTACCAAAGTGAACATAACTCAACAATAATTGATAAATACTTTCGAGCAAGAAGTCAGAGGTTTGAATCTCTCAATCCCAAAAGGCTGAACTCAAAAAAAAAAAGTGTTCTGATTTCCCTTCAACATCTTTATTGGTTCAAAACCTTGGACAAAATTAAAAAATACATCACGAAAAACTAAAAATACAAACTTTTTCTACTATTCTTCTCATTCTCGTTTTAACACAAATTTTCAAAACTTGAAAAAGAACAAAAAAAAAAAAAAGAAAGAAAATCACAAGTTTGTACACAAGATTTTCTCTTATATTCTATCAGCATCTCCATTGATATGAAACTTTGACGACACATTAAAAACACACACATCACAACGAACTCTTCTCTCCATCATATCAATCGCCACAAAACTTTTCAAGACATATCACAATCCTTAAACACGAGTTTTCTCTACTAATTCAACCCGGTTTTCGAGTGGATTAAAGAAGGAAAAAACAAATAAATTTGCATTTTTATGAACATTTAATTTCTTGAAACAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGATCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAACCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCGCCGTCGTCTCTCCTACTCCCGCCGCCGTCTCCGCCGCCCTCCCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

mRNA sequence

ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGTATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGATCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAACCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCGCCGTCGTCTCTCCTACTCCCGCCGCCGTCTCCGCCGCCCTCCCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

Coding sequence (CDS)

ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGTATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGATCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAACCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCGCCGTCGTCTCTCCTACTCCCGCCGCCGTCTCCGCCGCCCTCCCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

Protein sequence

MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS
Homology
BLAST of Lag0040971 vs. NCBI nr
Match: XP_038893139.1 (LOB domain-containing protein 12-like [Benincasa hispida])

HSP 1 Score: 335.9 bits (860), Expect = 2.0e-88
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCA+DCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCARDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 168
           CPQIHSDDKPP SLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDKPP-SLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 166

BLAST of Lag0040971 vs. NCBI nr
Match: XP_004148190.1 (LOB domain-containing protein 12 [Cucumis sativus] >KGN50694.1 hypothetical protein Csa_005796 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 2.9e-87
Identity = 166/168 (98.81%), Postives = 166/168 (98.81%), Query Frame = 0

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNF-ASSPNVIYDTIFGHDIVS 168
           CPQIHSDDK PSSLLLPPPSPPPSQCLNF ASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDK-PSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

BLAST of Lag0040971 vs. NCBI nr
Match: XP_023536420.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.9 bits (847), Expect = 6.5e-87
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 168
           CPQIHSDDKPP +LLLPPPS PPSQCLNFASSPNVIYD IFGHDIVS
Sbjct: 121 CPQIHSDDKPP-TLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

BLAST of Lag0040971 vs. NCBI nr
Match: XP_022957028.1 (LOB domain-containing protein 12-like [Cucurbita moschata] >KAG6600910.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031545.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.3 bits (843), Expect = 1.9e-86
Identity = 162/167 (97.01%), Postives = 164/167 (98.20%), Query Frame = 0

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 168
           CPQIHSD+KPP +LLLPPPS PPSQCLNFASSPNVIYD IFGHDIVS
Sbjct: 121 CPQIHSDEKPP-TLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

BLAST of Lag0040971 vs. NCBI nr
Match: KAA0035899.1 (LOB domain-containing protein 12-like [Cucumis melo var. makuwa] >TYK19054.1 LOB domain-containing protein 12-like [Cucumis melo var. makuwa])

HSP 1 Score: 328.9 bits (842), Expect = 2.5e-86
Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0

Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNF-ASSPNVIYDTIFGHDIVS 168
           CPQIHSDDK  SSLLLPPPSPPPSQCLNF ASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDK-SSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-54
Identity = 109/134 (81.34%), Postives = 117/134 (87.31%), Query Frame = 0

Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDA 62
           G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCP 122
           V SLV+EA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ + P   +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE-PTLQSHH 124

Query: 123 QIHSDDKPPSSLLL 137
           Q+   D+   +LLL
Sbjct: 125 QVLELDQDHKALLL 137

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.4e-44
Identity = 89/139 (64.03%), Postives = 110/139 (79.14%), Query Frame = 0

Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ--DHPVFP 121
           AV S+VYEA+ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q  + P   
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query: 122 NCPQIHSDDKPPSSLLLPP 139
            CP   S    PSS  + P
Sbjct: 129 LCPDSPSSSGSPSSKQVSP 147

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 0

Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDH 116
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+ +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 4.1e-36
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 0

Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA  C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 114
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.4e-36
Identity = 73/107 (68.22%), Postives = 88/107 (82.24%), Query Frame = 0

Query: 5   SPCASCKLLRRRCAKD-CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAV 64
           SPCA CKLLRR+C KD C+FAPYFP+ +P+KFAIVHK+FGASNV+KMLQEL    R DAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 65  MSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 111
            S+VYEA+AR++DPVYGCVG IS L  Q+  LQ QLA AQAE++ I+
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038893139.12.0e-8898.80LOB domain-containing protein 12-like [Benincasa hispida][more]
XP_004148190.12.9e-8798.81LOB domain-containing protein 12 [Cucumis sativus] >KGN50694.1 hypothetical prot... [more]
XP_023536420.16.5e-8797.60LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo][more]
XP_022957028.11.9e-8697.01LOB domain-containing protein 12-like [Cucurbita moschata] >KAG6600910.1 LOB dom... [more]
KAA0035899.12.5e-8698.21LOB domain-containing protein 12-like [Cucumis melo var. makuwa] >TYK19054.1 LOB... [more]
Match NameE-valueIdentityDescription
Q8LBW34.4e-5481.34LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
Q9SHE95.4e-4464.03LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
Q9LQR01.1e-3665.77LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=... [more]
Q9SK084.1e-3666.06LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S... [more]
Q9SA515.4e-3668.22LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 85..105
NoneNo IPR availablePANTHERPTHR31301:SF97LOB DOMAIN-CONTAINING PROTEIN 12-LIKEcoord: 2..116
NoneNo IPR availablePANTHERPTHR31301LOB DOMAIN-CONTAINING PROTEIN 4-RELATEDcoord: 2..116
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 6..103
e-value: 3.7E-42
score: 142.9
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 5..106
score: 26.690853

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040971.1Lag0040971.1mRNA