Lag0040575 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040575
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	THO complex subunit 1
Location	chr13: 6186690 .. 6189813 (+)
RNA-Seq Expression	Lag0040575
Synteny	Lag0040575

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACAACGAGACAACAAGTATGAAATTTAGGAATGTAAATCAATTTAAACTTTGATTTTGTATTATACACGAACAAATTGAGCTCGTCAACTCAACACTATTTTGTTAATGTACTTAAGAATTTGTGTTTGGTCAGCAAATGAAAAAGAAAAGAAGACAAGGAAATTTACCGATACAAGCTTTTAATTTATAATTATTAATATTAATAGAAAATTAAAATATGATAAGGTTAAATAAATAATTTAACCCTCGATCTTATGAAACCTGCAAACATTTACAATCATTTAACCCTCGATCTTATTACTAATATAAACTAACGTCTAATTCATATATTTGAGCGTGCATTGACATACTAGCATGAACATGATTTCAAGCTAAATAAGTTAGAGATTAACTTTGACAAAACAAATTCAAGACATAATAGTAACGGAGACTAAAATTGACATTTTGAAAATTTAAGGACTAAAATGTAATAATCTTGTAAGTTTAAGGATCAAAATAGACATTTTGAAAGCGAGGACCCAACATATAATAAATTTGAAAGTCTGAGAACTAAAATGAGATTTAAACATAAAAAAATAAAGGCAACCAATTACGATTTACAAGTTTGAGGTTTGTTTTCCGGGTATATTAAACTTCCATTGACCCGTGATATTTTCATATGTCTATGAGTTCGACATCGACAAGAGGAATAAATTGACATTTCCACTTTATCGAAAAAAATCGATAAAATACAAAGAAAATATTTATAAAAGTATCCTAACTCATTTTAAAAGTATAAACACATTTACTTATGAATTTATTTTTTTTTCTTGGTTTGTTTTTAATATTTGTGTTGATATTTTCATCACATTTCCATCAAATCAAGACCTTCAACATTTTCGTTCATATCAACATTTTAATCATTCATCCACAAATTTTGAAAAAAAAATATAAAAAAGAAAAAGAAAAACCAAAATTTCGTAATTGCCCCTTTCATTGCGTTCTCTTCGTTCATAGGAAATCGAAGCTCTGAGGAGACCGAGAGTCGACATGTTTTCTGCTAACTGAAGGCTTCAGTCTCCAGAACGCATAAGAATTGCTCGGCTGTGCCAATTTCTGAATCTTCGACATGGTAAACTCTCACTCTACAAGTCTGGTTTTATTCTTGTTTGGTATCTATTCAAGGTGCAAATTGTAGCGTCTCTTCAAACCTTCCTTCAGCAGTTTCGATGGCAATGGCTGTTATTCAGAACGCACCAGTGTCAAATTGTCCAATTGTTGTTTATTAAGGCATCGAAGTGTTCGTTTCAACCGATGATTTTCTGTGGAAGGTTTTTTCTGGTTCGGGAGAATATGTGTTATTGGTTGTTAGGATTATCTTGTACGATTTTTGAACGTTTTTCTTGTCAAATGGGAACGTTTTCTTTTGAAAGCGAGGGAGGAAACGTGGTTTTCTATATTTCTACTGCTTGAAGTCTATAACCAGGTCGTAATCAACAAAAAATTCAATTAAAATGGTTGTACCAGTAAAGCTGAAGTTATATATTCCTTTTCATCTCAAATAGGGCAGATTTTGAAGGAAATTGAACACATGGGTTATAATAGACTGTATCAGCTGCAAACAGTGGATTCATTGATCCGTGTTTGGTGATATAGGGATGTAGATGAGTTTATTGGTATTTAGGCATTTTGAACCAGAAACTACTTAAATCAATTCCGGTCATAAATACATGCGCACACACACGCACATATTTTAGTACATTGTTGTCCAAGCATCATGCAGCCGTGTTCTTTTCTTTTTTTTTTTTTTTATCCAGGAAGAGTTTCGGAAGGCCATATTGCAATCGGGGCCACCAGAAAATTTTGCTCTGCAGACAGTTCAAGATGTTATCAGACCTCAGGTAGCTACACCAAAACATCGGACTAATTGTATGGCATATAAATAACACCTCATAAGTTTGTAGAATTTTGAATGTCAATCACACATCACAAGTTCATAGAGTATTGAATGTTTTAAAGTCTGAGGGAAATTGCAAATTTGACCAATACATTTAGAGTTGAGAAGGTTTTTGGTTTTTTGGGGGGTGAGGGTTCTGTTCTGGTTTGTTTCTTCTCTTTGAATTATTATTGTCATTATATATAAGAGACAGAAAATATTTCATTGTCGAAAGCGTGCACGCGCGTGCACGCACAGAAAGAAAAGGATACCAAAAATGGTGGCTTCCTTCCCTCCTTGTCATTTTCCTACTAGAGATCTCTTTTTTTTTCTCCCAGTGAAATTCTTGGGTTAGGGTTGATTGACCTTACCCTCTGAGAGCATGAGGATTCCTTCCAGTTGAATAATTATATGAATGACCCGATGACCTTCACCTTGAGGGTCCATTCTTTTGATTGATTAGTATTCCTAAAAGTGGAGACTTAGAACTTTAAATCTTGACATTGTATTTCCTGAATATCGAGAACGAAGTGTAACTATCCTTTATCACTTGTTCTTATCGATTTGGAGCTGTCTTTCGTTACTAATTTAAAGTTTTTTGTGTAGATTTATTTTGTTTTGGGTTTTTTTTTATTTGCAGCCCCCTTTATACATGTTCATTTATCTTAAATGAAAGCTTGGTTTATTTTTTATGAAAAGAATTAAAACTTCACTCATTATATATAAAATAATAGAAGTTTTTATTTCAGATATTTTTCTTATTTAGTTTAATTTTTTATTTTTCACATAACAGAAGCACACAAAATTGGCACAAGATGAAAATCAATTGCTGGAAAATATTCTACGGCGATTACTTCAAGAATTAGTGGTAAGCTAAACTGTGGAGCTTGTTTAATTAAGATTTAGATTTCATCAATCATGTATACAATAGAGAAATTTATTTTACAATCCTTTTCGTTGTATATATAACTTCTCTTACATTAGACACTTTGTCATGGAGCTAGGGGAAGTTAGATCTCGACTCTGTTTTTATAGGGAGATGATTTTGCTGAAGTTTTCCTCTTTGGATTTATAAGCTTGATTTATGTCGAAGCTCAGGATTTGTATTGTCTCTTGGTTCTAAATGGAATTGTCTTTATCCATTCCAACATTGATAGAATCTGGTCCCTAAAATCCTTGGGTCATGGATGCCTTCAATTGTGA

mRNA sequence

ATGCTACAACGAGACAACAAGCTTCAGTCTCCAGAACGCATAAGAATTGCTCGGCTGTGCCAATTTCTGAATCTTCGACATGGTAAACTCTCACTCTACAAGTCTGGTTTTATTCTTGTTTGGTATCTATTCAAGGAAGAGTTTCGGAAGGCCATATTGCAATCGGGGCCACCAGAAAATTTTGCTCTGCAGACAGTTCAAGATGTTATCAGACCTCAGAAGCACACAAAATTGGCACAAGATGAAAATCAATTGCTGGAAAATATTCTACGGCGATTACTTCAAGAATTAGTGGGAGATGATTTTGCTGAAGTTTTCCTCTTTGGATTTATAAGCTTGATTTATGTCGAAGCTCAGGATTTGTATTGTCTCTTGGTTCTAAATGGAATTGTCTTTATCCATTCCAACATTGATAGAATCTGGTCCCTAAAATCCTTGGGTCATGGATGCCTTCAATTGTGA

Coding sequence (CDS)

ATGCTACAACGAGACAACAAGCTTCAGTCTCCAGAACGCATAAGAATTGCTCGGCTGTGCCAATTTCTGAATCTTCGACATGGTAAACTCTCACTCTACAAGTCTGGTTTTATTCTTGTTTGGTATCTATTCAAGGAAGAGTTTCGGAAGGCCATATTGCAATCGGGGCCACCAGAAAATTTTGCTCTGCAGACAGTTCAAGATGTTATCAGACCTCAGAAGCACACAAAATTGGCACAAGATGAAAATCAATTGCTGGAAAATATTCTACGGCGATTACTTCAAGAATTAGTGGGAGATGATTTTGCTGAAGTTTTCCTCTTTGGATTTATAAGCTTGATTTATGTCGAAGCTCAGGATTTGTATTGTCTCTTGGTTCTAAATGGAATTGTCTTTATCCATTCCAACATTGATAGAATCTGGTCCCTAAAATCCTTGGGTCATGGATGCCTTCAATTGTGA

Protein sequence

MLQRDNKLQSPERIRIARLCQFLNLRHGKLSLYKSGFILVWYLFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELVGDDFAEVFLFGFISLIYVEAQDLYCLLVLNGIVFIHSNIDRIWSLKSLGHGCLQL

Homology

[Close]

BLAST of Lag0040575 vs. NCBI nr
Match: XP_008460496.1 (PREDICTED: THO complex subunit 1 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 6.9e-19
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 43 LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 99
          L+ EEFRKAILQ GPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Sbjct: 5  LYLEEFRKAILQVGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 60

[Close]

BLAST of Lag0040575 vs. NCBI nr
Match: KGN51016.1 (hypothetical protein Csa_007827 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-18
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 43 LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 99
          L+ EEFRKAILQ GPPENFALQ VQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Sbjct: 5  LYLEEFRKAILQMGPPENFALQIVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 60

[Close]

BLAST of Lag0040575 vs. NCBI nr
Match: XP_011655214.1 (THO complex subunit 1 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-18
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 43 LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 99
          L+ EEFRKAILQ GPPENFALQ VQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Sbjct: 5  LYLEEFRKAILQMGPPENFALQIVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 60

[Close]

BLAST of Lag0040575 vs. NCBI nr
Match: XP_038892204.1 (THO complex subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 46 EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 99
          EEFRKAILQ+G PENFALQTVQDVI+PQKHTKLAQDENQLLENILRRLLQELV
Sbjct: 2  EEFRKAILQTGSPENFALQTVQDVIKPQKHTKLAQDENQLLENILRRLLQELV 54

[Close]

BLAST of Lag0040575 vs. NCBI nr
Match: XP_038892203.1 (THO complex subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 46 EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 99
          EEFRKAILQ+G PENFALQTVQDVI+PQKHTKLAQDENQLLENILRRLLQELV
Sbjct: 2  EEFRKAILQTGSPENFALQTVQDVIKPQKHTKLAQDENQLLENILRRLLQELV 54

[Close]

BLAST of Lag0040575 vs. ExPASy Swiss-Prot
Match: Q93VM9 (THO complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=THO1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 46 EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV 99
          + FR AILQ  P E FAL+TVQ  I+PQK TKLAQDENQ+LEN+LR LLQELV
Sbjct: 2  DAFRDAILQRAPIETFALKTVQHFIQPQKQTKLAQDENQMLENMLRTLLQELV 54

The following BLAST results are available for this feature:

BLAST of Lag0040575 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460496.1	6.9e-19	94.64	PREDICTED: THO complex subunit 1 [Cucumis melo]	[more]
KGN51016.1	2.6e-18	92.86	hypothetical protein Csa_007827 [Cucumis sativus]	[more]
XP_011655214.1	2.6e-18	92.86	THO complex subunit 1 [Cucumis sativus]	[more]
XP_038892204.1	1.7e-17	94.34	THO complex subunit 1 isoform X2 [Benincasa hispida]	[more]
XP_038892203.1	1.7e-17	94.34	THO complex subunit 1 isoform X1 [Benincasa hispida]	[more]

BLAST of Lag0040575 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VM9	1.3e-12	71.70	THO complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=THO1 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040575.1	Lag0040575.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0032784	regulation of DNA-templated transcription, elongation
cellular_component	GO:0000445	THO complex part of transcription export complex