Lag0040563 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040563
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H-like superfamily protein
Location	chr13: 6101970 .. 6102413 (+)
RNA-Seq Expression	Lag0040563
Synteny	Lag0040563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGTTGATGCTGCTTGTGATGTGGAGAATAGGCATTGTGGTATAGGTGTGGTGATTCGCAGTCAGAGGGGTGAACTGAAGTTAGCCTTGCAAAAAGGATCGTCTACGTTTACTAGCCCGTTGTGTGCTGAGGTTGGGGCGGTTCTAGAAGGGATCAAGTTAGCAAGCCAGAATGATGTCCGAAGACTAACAATTTTGTCTGATTCCCTTACTCTAATATCTTTTATGCTGTAGAAGGAGCGGTGTGCGGTGGACTGTGCCACTGTTGTTTGGGATATTAGAAGGTTGTCCGCTATGTTCCATCAAATCAATTTTTTCCATGTTAAGCGGGACTTTAATGTTTTAGTTCATGATTTGGCCCGTGCGGGTTTGTATTCGACACCACATGTGTGGTACTCCAACTTCCCAGATTGGGTTGTTAGGCTAGGTCAATGTGAGTAG

mRNA sequence

ATGCATGTTGATGCTGCTTGTGATGTGGAGAATAGGCATTGTGGTATAGGTGTGGTGATTCGCAGTCAGAGGGGTGAACTGAAGTTAGCCTTGCAAAAAGGATCGTCTACGTTTACTAGCCCGTTGTGTGCTGAGAAGGAGCGGTGTGCGGTGGACTGTGCCACTGTTGTTTGGGATATTAGAAGGTTGTCCGCTATGTTCCATCAAATCAATTTTTTCCATGTTAAGCGGGACTTTAATGTTTTAGTTCATGATTTGGCCCGTGCGGGTTTGTATTCGACACCACATGTGTGGTACTCCAACTTCCCAGATTGGGTTGTTAGGCTAGGTCAATGTGAGTAG

Coding sequence (CDS)

ATGCATGTTGATGCTGCTTGTGATGTGGAGAATAGGCATTGTGGTATAGGTGTGGTGATTCGCAGTCAGAGGGGTGAACTGAAGTTAGCCTTGCAAAAAGGATCGTCTACGTTTACTAGCCCGTTGTGTGCTGAGAAGGAGCGGTGTGCGGTGGACTGTGCCACTGTTGTTTGGGATATTAGAAGGTTGTCCGCTATGTTCCATCAAATCAATTTTTTCCATGTTAAGCGGGACTTTAATGTTTTAGTTCATGATTTGGCCCGTGCGGGTTTGTATTCGACACCACATGTGTGGTACTCCAACTTCCCAGATTGGGTTGTTAGGCTAGGTCAATGTGAGTAG

Protein sequence

MHVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPLCAEKERCAVDCATVVWDIRRLSAMFHQINFFHVKRDFNVLVHDLARAGLYSTPHVWYSNFPDWVVRLGQCE

Homology

[Close]

BLAST of Lag0040563 vs. NCBI nr
Match: XP_022154440.1 (uncharacterized protein LOC111021711 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 38/141 (26.95%), Postives = 60/141 (42.55%), Query Frame = 0


Query: 1   MHVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPL---------------CAE 60
           ++VD AC + N   GIGVV ++ +GE+ +A+ +    F  PL               C +
Sbjct: 138 INVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLD 197

Query: 61  KERCAVDCATV-----------------VW--DIRRLSAMFHQINFFHVKRDFNVLVHDL 107
                VD  +                  VW  DI   +  F  I F H++R  + + H L
Sbjct: 198 LIFVQVDSDSQNSINLISQEYDPSHQPNVWVDDIHMCAINFIDILFMHIQRSSSNVTHRL 257

[Close]

BLAST of Lag0040563 vs. NCBI nr
Match: MBA0777333.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 54.3 bits (129), Expect = 7.9e-04
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 1   MHVDAACDVENRHCGIGVVIRSQRGE---LKLALQKGSSTFTSPLCAEKERCAVDCATVV 60
           ++ DAA  ++ +      +IR++RG+   +K+ ++  S T    +  E    A D  +V+
Sbjct: 275 LNFDAAYKIQTKRSCSSFIIRNERGKTGFVKVEVEGDSRTVIEKINQEGFYRA-DLDSVI 334

Query: 61  WDIRRLSAMFHQINFFHVKRDFNVLVHDLARAGLYSTPHVWYSNFPDWVVR 109
            DI+ +   FHQI F HV+R+ N + H +AR G   + H ++      VVR
Sbjct: 335 TDIKSIGRTFHQIRFKHVRREANWVTHFIAREGHSRSKHTFFMEDNPKVVR 384

The following BLAST results are available for this feature:

BLAST of Lag0040563 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154440.1	6.1e-04	26.95	uncharacterized protein LOC111021711 [Momordica charantia]	[more]
MBA0777333.1	7.9e-04	29.73	hypothetical protein [Gossypium trilobum]	[more]

BLAST of Lag0040563 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040563.1	Lag0040563.1	mRNA