Lag0040557 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040557
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein kinase domain containing protein, expressed
Location	chr13: 6002566 .. 6004591 (-)
RNA-Seq Expression	Lag0040557
Synteny	Lag0040557

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAAATTTCCAAAAATTGGTCAATTAAAGTTCTTGAAACCAAAGCTTTGCTCGAGGGATTGAAAGAGATCAGTGATACCTGCAATTGCCGCTCTATCTTTCTTGAAGTGGAAATCGACAATCTCGAAGTCGCCAATGCCTTGATCGAAAAATCAGAGGACATCTCGAATATGAAGACCTTCACCGATCAAATCAAGGACCTAGCTTCGAAGTCGTTCGACATGAAATTTCGTCATTGCAGTAGATTTTTTAACACAGACGCGTACTGTGTTGTGAGGAAAGCCATGGATCTCTCTTTTGTTTCTGATTCATTCCATGGAAGCGTAGCTCACGGGAAGAGGGGCAAATTTTTTGGGCTCCAAATCTTCCCCTGGATTTCCCCCTATTAATTGGGGTAGGTGTAAAAACAGTTGTTCGTAATTAATTCCCGTTTTAATATTTTGTATATTTGAGTTCAACATGTGGGATGGTTGAAGATTCAAACTTTTGACTTTTAGATGTCGAACTAAAAAATAATTTCCTAACCAGTTGAGTGATGTAGGCAGATTTAGAGGGTATGTTCGGTTTAACTTTTCAAGTGTTTAATTTTGAAAAAAAAAACATTAAAAAAATCTAGTGTTTGACAACAACTAAAAATGACTTATTAAAAAATGAGATTGAGAAATAAAACTATTTTGGGTGAAACACTTGAAAACAATTTTTTTTAAAAGATTTGTTAAGTATATCATAATTTGGATATAAAAACATTTATGAGAAAATGTAATCAAACGTAAGTATTTAAATTCTAAACCATTTTTATTCTAAATTTAAACTAAAAGGTATTCTAAAAGGATATTAGGTTAGTTTTACTTTATTTTTGCACTAAAAGTATTTAATCAATAAAGTCTAATAATTAACATTATCTAATATTAAACTTTCAAAAGCAATAGTTTTGTTTAAGGAAAGTATTTCAATAAATTTGCAGGCTCCATTTGAAATTGATTTTGAGAAATTTATAAGCGATTATATGTAATAGTCCGTATTTTCCAATCCAAACATTCTAACAATAATACAAAAACATAACATTCAGAAATTAAAACAGATTAAAAAAAATGAGTGAAAACAATTTCTTATACAAAGGATTTATTATATAAACTATCAAATCTATAACAACTTTTGATGTCTAGTCAACAAGAACATAGCTCAACTGGCATAAAGATGTATTGATAACCACAAGGTTTGTGGTTCGAATCCCCCCACTCCCACTTATTGTCAAAAAAAAAAAAAAAAAAAAACTTTTGATGTCTAGTCAAAGCGAGCATAGGTGATTGACATATATCTTCAACCAAGAGGTTAGAAATTTAAATCCACCATCCCAAATATTGATGTACTAAAAAAAAGACAACTTTTAATGTCTAGTGCGAGGATCTTTAACCGTTCACTTTTTTTTTTTTTTTTTTCAGAAGTATCACTTCCTTCATTTGAAAACATTTTAGAAAAGAAAAAATGCCTACAAATATCAAGCTTTGAAATTCATTTTCCTTCAAAAACAATTGTAAACAAAATATAAATTAAAATATTAGAAAAAATCATAACTTTCAGTCAATTAGTGCTTTTAAAACCAAAATTGTTGAATCCAACAAAGCTTTCATTTAACAAAAATTTTGGAAGCCCCCGAATTCCTCTTGGAAGCTAAATGTTGATGCTTCCTGGAACAATCAGAGTCGAAGAGGCGGCGTTGGTTGGATCCCCCGTGACTCATCAGGGTCTTCGATTTGCTTGGACTTTAAACGCTTGTTCAGCAGGTGGTCTATTAAAATGCTGGAGGTGAAGGCTGTCCTTGAAGGCCTGAAATCCGCCATTTCGGTTGCAAATTTTGGTTTTAATCCGAGCCACCTTTCGCTGATAGTGGAATCAGATGCAATCTCTGTAGTTAATCTCCTGAACGAGGAAGACGAAGACATCTCTAAGATCTCCTTCCTGATTGAGGAGATCAGAAATCTGGAAATGAATTTCAAGGAGGTCCTTTTTGTTTTGCCCTAG

mRNA sequence

ATGCAGAAAATTTCCAAAAATTGGTCAATTAAAGTTCTTGAAACCAAAGCTTTGCTCGAGGGATTGAAAGAGATCAGTGATACCTGCAATTGCCGCTCTATCTTTCTTGAAGTGGAAATCGACAATCTCGAAGTCGCCAATGCCTTGATCGAAAAATCAGAGGACATCTCGAATATGAAGACCTTCACCGATCAAATCAAGGACCTAGCTTCGAAGTCGTTCGACATGAAATTTCGTCATTGCAGTAGATTTTTTAACACAGACGCGTACTGTGTTGTGAGGAAAGCCATGGATCTCTCTTTTGTTTCTGATTCATTCCATGGAAGCAGTCGAAGAGGCGGCGTTGGTTGGATCCCCCGTGACTCATCAGGGTCTTCGATTTGCTTGGACTTTAAACGCTTGTTCAGCAGGTGGTCTATTAAAATGCTGGAGGTGAAGGCTGTCCTTGAAGGCCTGAAATCCGCCATTTCGGTTGCAAATTTTGGTTTTAATCCGAGCCACCTTTCGCTGATAGTGGAATCAGATGCAATCTCTGTAGTTAATCTCCTGAACGAGGAAGACGAAGACATCTCTAAGATCTCCTTCCTGATTGAGGAGATCAGAAATCTGGAAATGAATTTCAAGGAGGTCCTTTTTGTTTTGCCCTAG

Coding sequence (CDS)

ATGCAGAAAATTTCCAAAAATTGGTCAATTAAAGTTCTTGAAACCAAAGCTTTGCTCGAGGGATTGAAAGAGATCAGTGATACCTGCAATTGCCGCTCTATCTTTCTTGAAGTGGAAATCGACAATCTCGAAGTCGCCAATGCCTTGATCGAAAAATCAGAGGACATCTCGAATATGAAGACCTTCACCGATCAAATCAAGGACCTAGCTTCGAAGTCGTTCGACATGAAATTTCGTCATTGCAGTAGATTTTTTAACACAGACGCGTACTGTGTTGTGAGGAAAGCCATGGATCTCTCTTTTGTTTCTGATTCATTCCATGGAAGCAGTCGAAGAGGCGGCGTTGGTTGGATCCCCCGTGACTCATCAGGGTCTTCGATTTGCTTGGACTTTAAACGCTTGTTCAGCAGGTGGTCTATTAAAATGCTGGAGGTGAAGGCTGTCCTTGAAGGCCTGAAATCCGCCATTTCGGTTGCAAATTTTGGTTTTAATCCGAGCCACCTTTCGCTGATAGTGGAATCAGATGCAATCTCTGTAGTTAATCTCCTGAACGAGGAAGACGAAGACATCTCTAAGATCTCCTTCCTGATTGAGGAGATCAGAAATCTGGAAATGAATTTCAAGGAGGTCCTTTTTGTTTTGCCCTAG

Protein sequence

MQKISKNWSIKVLETKALLEGLKEISDTCNCRSIFLEVEIDNLEVANALIEKSEDISNMKTFTDQIKDLASKSFDMKFRHCSRFFNTDAYCVVRKAMDLSFVSDSFHGSSRRGGVGWIPRDSSGSSICLDFKRLFSRWSIKMLEVKAVLEGLKSAISVANFGFNPSHLSLIVESDAISVVNLLNEEDEDISKISFLIEEIRNLEMNFKEVLFVLP

Homology

[Close]

BLAST of Lag0040557 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 8.5e-07
Identity = 36/101 (35.64%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 105 SFHGSSRRGGVGWIPRDSSGSSICLDFKRLFSRWSIKMLEVKAVLEGLKSAISVANFGFN 164
           S+   + +GGV W+  DS GSSIC++ K L  +W +KMLE KA++EGLK+ + +     +
Sbjct: 13  SWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTYLLIRE-TVS 72

Query: 165 PSHLSLIVESDAISVVNLLNEEDEDISKISFLIEEIRNLEM 206
            SH  +I     + +  +LN    D+ ++S +++EI +LE+
Sbjct: 73  YSHRPIIF----LELARILNNTHMDLIELSNVVDEIFDLEL 108

[Close]

BLAST of Lag0040557 vs. NCBI nr
Match: ABA94760.1 (Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-06
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 102 VSDSFHGSSRRGGVGWIPRDSSGSSICLDFKRLFSRWSIKMLEVKAVLEGLKSAISVANF 161
           V  SF     +GG+G I RD+SGS++    K L S  +    E++A +EGL   I    +
Sbjct: 339 VDGSFDADRGKGGIGMILRDNSGSTVFAACKSLDSCKNALEAEIRACMEGL---ILALQW 398

Query: 162 GFNPSHLSLIVESDAISVVNLLNEEDEDISKISFLIEEIRNLEMNFKEVL 212
              P    +++E+D +S+VNLL E + D+S+++ L++EI+ L    +EVL
Sbjct: 399 TMRP----ILIETDCVSLVNLLKEGNRDLSELANLVQEIKRLLSERREVL 441

[Close]

BLAST of Lag0040557 vs. NCBI nr
Match: XP_025877173.1 (uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877174.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877175.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877176.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877177.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877178.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877179.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877180.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group])

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-06
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 102 VSDSFHGSSRRGGVGWIPRDSSGSSICLDFKRLFSRWSIKMLEVKAVLEGLKSAISVANF 161
           V  SF     +GG+G I RD+SGS++    K L S  +    E++A +EGL   I    +
Sbjct: 335 VDGSFDADRGKGGIGMILRDNSGSTVFAACKSLDSCKNALEAEIRACMEGL---ILALQW 394

Query: 162 GFNPSHLSLIVESDAISVVNLLNEEDEDISKISFLIEEIRNLEMNFKEVL 212
              P    +++E+D +S+VNLL E + D+S+++ L++EI+ L    +EVL
Sbjct: 395 TMRP----ILIETDCVSLVNLLKEGNRDLSELANLVQEIKRLLSERREVL 437

[Close]

BLAST of Lag0040557 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 105 SFHGSSRRGGVGWIPRDSSGSSICLDFKRLFSRWSIKMLEVKAVLEGLKSAISVANFG-F 164
           S+  S+ RGG+GWI R   G  +    + + +  ++K+LE  A+LEGL+   ++ N G  
Sbjct: 86  SWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLR---NLTNLGVL 145

Query: 165 NPSHLSLIVESDAISVVNLLNEEDEDISKISFLIEEIRNL 204
            P H    +E+D+  V +LLN + ED++K  +++EEI NL
Sbjct: 146 RPLH----IETDSAEVESLLNRKREDLTKTGWVVEEILNL 178

[Close]

BLAST of Lag0040557 vs. ExPASy TrEMBL
Match: Q2R147 (Protein kinase domain containing protein, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g40380 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 102 VSDSFHGSSRRGGVGWIPRDSSGSSICLDFKRLFSRWSIKMLEVKAVLEGLKSAISVANF 161
           V  SF     +GG+G I RD+SGS++    K L S  +    E++A +EGL   I    +
Sbjct: 339 VDGSFDADRGKGGIGMILRDNSGSTVFAACKSLDSCKNALEAEIRACMEGL---ILALQW 398

Query: 162 GFNPSHLSLIVESDAISVVNLLNEEDEDISKISFLIEEIRNLEMNFKEVL 212
              P    +++E+D +S+VNLL E + D+S+++ L++EI+ L    +EVL
Sbjct: 399 TMRP----ILIETDCVSLVNLLKEGNRDLSELANLVQEIKRLLSERREVL 441

[Close]

BLAST of Lag0040557 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-06
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 105 SFHGSSRRGGVGWIPRDSSGSSICLDFKRLFSRWSIKMLEVKAVLEGLKSAISVANFG-F 164
           S+  S+ RGG+GWI R   G  +    + + +  ++K+LE  A+LEGL+   ++ N G  
Sbjct: 86  SWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLR---NLTNLGVL 145

Query: 165 NPSHLSLIVESDAISVVNLLNEEDEDISKISFLIEEIRNL 204
            P H    +E+D+  V +LLN + ED++K  +++EEI NL
Sbjct: 146 RPLH----IETDSAEVESLLNRKREDLTKTGWVVEEILNL 178

The following BLAST results are available for this feature:

BLAST of Lag0040557 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599977.1	8.5e-07	35.64	hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ABA94760.1	7.2e-06	35.45	Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group...	[more]
XP_025877173.1	7.2e-06	35.45	uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >X...	[more]
XP_022155262.1	1.6e-05	36.00	uncharacterized protein LOC111022403 [Momordica charantia]	[more]

BLAST of Lag0040557 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0040557 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q2R147	3.5e-06	35.45	Protein kinase domain containing protein, expressed OS=Oryza sativa subsp. japon...	[more]
A0A6J1DNV9	7.8e-06	36.00	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Lag0040557 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 101..214 e-value: 3.4E-7 score: 32.2
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 106..213 e-value: 8.2E-11 score: 41.8 coord: 3..96 e-value: 4.7E-9 score: 36.1
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 105..210 coord: 6..98
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 101..213 e-value: 3.91835E-15 score: 66.954
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 105..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040557.1	Lag0040557.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity