Lag0040483 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040483
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr13: 5242212 .. 5245060 (-)
RNA-Seq Expression	Lag0040483
Synteny	Lag0040483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTGTTGGAAGCTACGGCCATTTTGGATGGAATTAAGGCAATTGGAAATACATGTATCCAAAATGGGACGCCACTGCAAGTTGAGTCAGATGCTTTGGTTGTAATGATCGTTGACGACATTCTCCGAGCATCCTCTCGTCTTCCAGCTGTTGAATTTAACCATTGTAATCGCCTTGCCAACACAGTAGCCCACTGGTTGGCAAGGGAAGCGTCTTTTTTGTCGATGGAAGGAGATCATCCCCGATTGAGGGATTACGGGCAAATATTTTGGGCCCCTGATATTCCAGTTTGGGTTTCCCCTCCTCTTTATGAGGGAAGTTGTTTGGGTGGTTAGTCTTTAATGAATTTCCTTTTATTCAAAAAAAAAAAAAAAAAAAAATCAGCACCAGTTTAATCCTTCATTAATGTTATTTTTTAAAAAAAGCATTAATGCAGGGCTTTAGAAAAAAAAATTATTGTTTTAAAAAACATTGTTAAAATTATAATATTGTGTTTATGCAGTCCTTTTTACCCCAATATATATTGGTTAAATTATAAATTTGTCTCTACAATAATCTAGAGGAAGGGACTGACTTTAAGCTTTATTGAGGGTTCGGAGATTAAAACTAGACATTTAAAAAGTATAGGACTAGAATAGAACAAAATATAAAGTACTAGAACAAAAATATGATATTTTAACCAATAAAATTATATTTAGTTAAAAAAAATCAAATTATTAAAAAAATCCTGAAATATGAGGTTGGTTTCTTTCTTTTTTTTTTTTGCACAAGATTGGTTTCAATTATATTTCAAACATTAAAAATTTTCATTTTAACTCTTGAAATTTGAAGACTTTTATCGTTAAATTCATGGATGGAAATGATATGTCTGCTTATGTGTTGCTTATATGAATAAATTTTAATACATACGTGAAAAAAAAAATAAAGACACATAGTAGTTGCAAAAGATTGAAAGAATTTAAGAGTTATGATAAAACAAAAAGAACACAAAATTTGTAAGTATACACATCATTTTTCTTCCATGAAATTAATGCTAAATACTTCAAATTTTAAGAGTTTAAATAAAAATTTTCAAATTTTGAATATAATTAAAACCAACTCTCATGGTTAGAGATATCTTCAATATTTTTTTTTAAAAAAAGTTAGCATAATTTCCAATCAATTTAACAAAGGACAGAAATTCAATAAAGTGAGACAATTATTGTCCACTTGACTTGGTTAACTCAAAATCTCATTCTATAATGTGATTTAAAAAAAATATCATATTACTTATGAATCTCGATAAAAAGGATCGGAGAGAATTTCATATATATCTTTTCTTTTAAAGTCTAATTAACTTTTTCTTTTTTCATTCATGTCGGTCCATTAAATAAAAAGTTTTAAGTTTTAACATATCTTATGCAATCGATGAGTCCAATCAAAAAAGTCGAAGAGACTTTCATATATCTCTTTTCTTCCTCTAGCTGAGCCTCTAATTGCATCTTGTTCACAATCCATGATTTTAGAGGGAAAATAACTTCTATAAAAAAATTATTAAAAAATCCACATAACTTTTTTTCCTTTTTTTTTTTTCAGATTCTCATTTTTCATATTTATAAGCGATAGTTGATCTTACACAAAATGATAACAAATCTAGCACAAGATAAAATGATTTGTAAATATGAACAATTTTAAGCCCAACTCAAATAAAAACATTTGAAAAGTCGAAAAGACCCATTAGCATATCTCAACCATGCATGTTTATCAATGATAGATATCTATTGCTAATTTACGTCCACCGATCTATTAATGAAGATGTTTATAGACGAAGAATTTTGGCTAACCACAAATTGTCACGTAATAGTGACAAAATTAATGTCATTAAAATTTAGACCAATCAACTAAATTTAACTTTTCAAAAATTGGCTAATTAAATAATACCATAAGTTTATATATGACCACTTGAGTTGGTCCAATCAAATTGCACAATAGGGCTATTTGATGACTTAAGTTGATCTAATCAGATTGTGTCATGTCTATCTGAAGGCTAAAGAAGATTAAGGAGCCAGAAGGCCAAAAGAAAATCTCGAAGAATTTGAAGGCCAAAAGAAGATCATGAAGAAAGAAAAAATCAATGAGAAATAGAAGACCAAAAGAAGATCGAGTAGCCAAGAGACTCATCCAAAAAAAAATTAAGTAGTCAGGGAATCAATCCAAAGAGCTCAAATAGTCAAGTGGTCAAATCCAAAGATATCAAGTAGCTAGCCAAATGTTACATATTCAAGAAAAAGAATCAGAGGACAAATAAAATTCAATAAAATTATATTAAGTCCATGAATTAATTCTCTATTATAAAAATCTAATCTCATGTGAACAATGTCTATTACTAATAGACGTAAAAATAATATATCAGTATATACGATAAAAATCATATATTGATAATATATGAGAGAAAATTACGTAGAAATGTTCAAATAGGCATGAAAAACTTTTAAAAATTGATAACAAATTAATTTTCTCAGGACAGATTGTTGGAACTATCGCTGTATATAGAAACTGTCACACTAACAAACAGATTACAAGGCAACTGGCTACAAACAAATACAGTGTAAATAACAGTACAGACACTGTATTTAACGATAATTACAGAACTCAAAATAAACCAGAAGAAGAACAGATTGAAGTTACAAATGATGTAAATAGCCTGATCAATAACACTCCAAAGGTCGTAGATGATCCAACTGACAACCACAGCCACATCAAACGAACAGTACCTGTAAAACAAAAGAATGTGATGATTGGTAGTCGAGGCACGCTTTCAAAGCGCTGTCCTGAAGACAATTATTCGCTCTGCACGGGTTGCTAG

mRNA sequence

ATGAAAGTGTTGGAAGCTACGGCCATTTTGGATGGAATTAAGGCAATTGGAAATACATGTATCCAAAATGGGACGCCACTGCAAGTTGAGTCAGATGCTTTGGTTGTAATGATCGTTGACGACATTCTCCGAGCATCCTCTCGTCTTCCAGCTGTTGAATTTAACCATTGTAATCGCCTTGCCAACACAGTAGCCCACTGGTTGGCAAGGGAAGCGTCTTTTTTGTCGATGGAAGGAGATCATCCCCGATTGAGGGATTACGGGCAAATATTTTGGGCCCCTGATATTCCAGTTTGGGTTTCCCCTCCTCTTTATGAGGGAAGTTGTTTGGGTGGACAGATTGTTGGAACTATCGCTGTATATAGAAACTGTCACACTAACAAACAGATTACAAGGCAACTGGCTACAAACAAATACAGTGTAAATAACAGTACAGACACTGTATTTAACGATAATTACAGAACTCAAAATAAACCAGAAGAAGAACAGATTGAAGTTACAAATGATGTAAATAGCCTGATCAATAACACTCCAAAGGTCGTAGATGATCCAACTGACAACCACAGCCACATCAAACGAACAGTACCTGTAAAACAAAAGAATGTGATGATTGGTAGTCGAGGCACGCTTTCAAAGCGCTGTCCTGAAGACAATTATTCGCTCTGCACGGGTTGCTAG

Coding sequence (CDS)

ATGAAAGTGTTGGAAGCTACGGCCATTTTGGATGGAATTAAGGCAATTGGAAATACATGTATCCAAAATGGGACGCCACTGCAAGTTGAGTCAGATGCTTTGGTTGTAATGATCGTTGACGACATTCTCCGAGCATCCTCTCGTCTTCCAGCTGTTGAATTTAACCATTGTAATCGCCTTGCCAACACAGTAGCCCACTGGTTGGCAAGGGAAGCGTCTTTTTTGTCGATGGAAGGAGATCATCCCCGATTGAGGGATTACGGGCAAATATTTTGGGCCCCTGATATTCCAGTTTGGGTTTCCCCTCCTCTTTATGAGGGAAGTTGTTTGGGTGGACAGATTGTTGGAACTATCGCTGTATATAGAAACTGTCACACTAACAAACAGATTACAAGGCAACTGGCTACAAACAAATACAGTGTAAATAACAGTACAGACACTGTATTTAACGATAATTACAGAACTCAAAATAAACCAGAAGAAGAACAGATTGAAGTTACAAATGATGTAAATAGCCTGATCAATAACACTCCAAAGGTCGTAGATGATCCAACTGACAACCACAGCCACATCAAACGAACAGTACCTGTAAAACAAAAGAATGTGATGATTGGTAGTCGAGGCACGCTTTCAAAGCGCTGTCCTGAAGACAATTATTCGCTCTGCACGGGTTGCTAG

Protein sequence

MKVLEATAILDGIKAIGNTCIQNGTPLQVESDALVVMIVDDILRASSRLPAVEFNHCNRLANTVAHWLAREASFLSMEGDHPRLRDYGQIFWAPDIPVWVSPPLYEGSCLGGQIVGTIAVYRNCHTNKQITRQLATNKYSVNNSTDTVFNDNYRTQNKPEEEQIEVTNDVNSLINNTPKVVDDPTDNHSHIKRTVPVKQKNVMIGSRGTLSKRCPEDNYSLCTGC

Homology

The following BLAST results are available for this feature:

BLAST of Lag0040483 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0040483 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0040483 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0040483 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 5..70 e-value: 2.89734E-8 score: 48.8496

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040483.1	Lag0040483.1	mRNA