Lag0040448 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040448
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	SANT domain-containing protein
Location	chr13: 4928223 .. 4928534 (+)
RNA-Seq Expression	Lag0040448
Synteny	Lag0040448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTGAGATTGAAATACTGGAAGCTGTAATAACAGAGAAATTACTTAAAAATTTTGAGATAATTGAAGAGTTAGATAAGACGGAAGGTCTTGCAATTATGGAATCAGTGAAAGTTGCATATTGTGTCATGACAATGGAGTGCATGGTGGGAGGCATTGAAAAACACGAAAGGTATTTTGACGCATTGAATTCAACTCAGCTGCTTAAGAACTTGCCTACTTCCTTTTCACTCCAGCCTTGCACAGTTTTCTGTTTGGAAGGGCAATTCAATTCCAGCCTTGCCACCTACATCCTCGCTCACAATTAG

mRNA sequence

ATGGCCATTGAGATTGAAATACTGGAAGCTGTAATAACAGAGAAATTACTTAAAAATTTTGAGATAATTGAAGAGTTAGATAAGACGGAAGGTCTTGCAATTATGGAATCAGTGAAAGTTGCATATTGTGTCATGACAATGGAGTGCATGGTGGGAGGCATTGAAAAACACGAAAGGTATTTTGACGCATTGAATTCAACTCAGCTGCTTAAGAACTTGCCTACTTCCTTTTCACTCCAGCCTTGCACAGTTTTCTGTTTGGAAGGGCAATTCAATTCCAGCCTTGCCACCTACATCCTCGCTCACAATTAG

Coding sequence (CDS)

ATGGCCATTGAGATTGAAATACTGGAAGCTGTAATAACAGAGAAATTACTTAAAAATTTTGAGATAATTGAAGAGTTAGATAAGACGGAAGGTCTTGCAATTATGGAATCAGTGAAAGTTGCATATTGTGTCATGACAATGGAGTGCATGGTGGGAGGCATTGAAAAACACGAAAGGTATTTTGACGCATTGAATTCAACTCAGCTGCTTAAGAACTTGCCTACTTCCTTTTCACTCCAGCCTTGCACAGTTTTCTGTTTGGAAGGGCAATTCAATTCCAGCCTTGCCACCTACATCCTCGCTCACAATTAG

Protein sequence

MAIEIEILEAVITEKLLKNFEIIEELDKTEGLAIMESVKVAYCVMTMECMVGGIEKHERYFDALNSTQLLKNLPTSFSLQPCTVFCLEGQFNSSLATYILAHN

Homology

[Close]

BLAST of Lag0040448 vs. NCBI nr
Match: XP_038901324.1 (uncharacterized protein LOC120088243 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-12
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 2   AIEIEILEAVITEKLLKNFEIIEELDKTEGLAIMESVKVAYCVMTMEC-----MVGGIEK 61
           ++E EIL+AV+TEKLL NFE+IE+LDK EGLAIMES+K AYC + +EC     +V GI K
Sbjct: 47  SLESEILDAVLTEKLLVNFELIEQLDKAEGLAIMESMKGAYCAVAVECTVKYLLVEGIHK 106

Query: 62  HERYFDAL 65
           H RYFDA+
Sbjct: 107 HGRYFDAV 114

[Close]

BLAST of Lag0040448 vs. NCBI nr
Match: XP_008465305.1 (PREDICTED: uncharacterized protein LOC103502960 isoform X1 [Cucumis melo] >KAA0033499.1 Homeodomain-like protein [Cucumis melo var. makuwa] >TYK26830.1 Homeodomain-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 2   AIEIEILEAVITEKLLKNFEIIEELDKTEGLAIMESVKVAYCVMTMEC-----MVGGIEK 61
           +IE EI EAV+TEKLL++FE IE+LDK EGLAIMES+K AYC + +EC     +V GI+K
Sbjct: 47  SIESEIFEAVVTEKLLESFEYIEQLDKAEGLAIMESMKAAYCAVAVECTVKFLLVEGIQK 106

Query: 62  HERYFDAL 65
             RYFDA+
Sbjct: 107 DGRYFDAV 114

[Close]

BLAST of Lag0040448 vs. NCBI nr
Match: XP_008465306.1 (PREDICTED: uncharacterized protein LOC103502960 isoform X2 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 2   AIEIEILEAVITEKLLKNFEIIEELDKTEGLAIMESVKVAYCVMTMEC-----MVGGIEK 61
           +IE EI EAV+TEKLL++FE IE+LDK EGLAIMES+K AYC + +EC     +V GI+K
Sbjct: 47  SIESEIFEAVVTEKLLESFEYIEQLDKAEGLAIMESMKAAYCAVAVECTVKFLLVEGIQK 106

Query: 62  HERYFDAL 65
             RYFDA+
Sbjct: 107 DGRYFDAV 114

[Close]

BLAST of Lag0040448 vs. NCBI nr
Match: XP_023512220.1 (telomere repeat-binding protein 3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 2   AIEIEILEAVITEKLLKNFEIIEELDKTEGLAIMESVKVAYCVMTMEC-----MVGGIEK 61
           AIE EI EAVITEKLL+ FE+IE+L+K EGL IMES+K AYC + +EC     +V G+ K
Sbjct: 47  AIESEISEAVITEKLLEIFEMIEQLEKAEGLQIMESMKAAYCAVAVECTVKYLLVEGVYK 106

Query: 62  HERYFDAL 65
           H RYFDA+
Sbjct: 107 HGRYFDAV 114

[Close]

BLAST of Lag0040448 vs. NCBI nr
Match: XP_022944402.1 (uncharacterized protein LOC111448860 isoform X1 [Cucurbita moschata] >XP_022944403.1 uncharacterized protein LOC111448860 isoform X1 [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 2   AIEIEILEAVITEKLLKNFEIIEELDKTEGLAIMESVKVAYCVMTMEC-----MVGGIEK 61
           AIE EI EAVITEKLL+ FE+IE+L+K EGL IMES+K AYC + +EC     +V G+ K
Sbjct: 47  AIESEISEAVITEKLLEIFEMIEQLEKAEGLQIMESMKAAYCAVAVECTVKYLLVEGVYK 106

Query: 62  HERYFDAL 65
           H RYFDA+
Sbjct: 107 HGRYFDAV 114

The following BLAST results are available for this feature:

BLAST of Lag0040448 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901324.1	1.9e-12	63.24	uncharacterized protein LOC120088243 [Benincasa hispida]	[more]
XP_008465305.1	1.2e-11	61.76	PREDICTED: uncharacterized protein LOC103502960 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_008465306.1	1.2e-11	61.76	PREDICTED: uncharacterized protein LOC103502960 isoform X2 [Cucumis melo]	[more]
XP_023512220.1	4.7e-11	61.76	telomere repeat-binding protein 3-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022944402.1	4.7e-11	61.76	uncharacterized protein LOC111448860 isoform X1 [Cucurbita moschata] >XP_0229444...	[more]

BLAST of Lag0040448 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040448.1	Lag0040448.1	mRNA