Lag0040383 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040383
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ring finger protein, putative
Location	chr13: 4351457 .. 4351945 (-)
RNA-Seq Expression	Lag0040383
Synteny	Lag0040383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTTACAGAGGATTCAGATATTTTTTTATTTTGCATCCAAATCTCCATCGGCATCTTCTTCCTCGTTCTCATAGCCCTAGCTTACCACTGCAGACGCCGCATCCAAGTCGCCGCCGATCTCGGCGGCGTCGGCGACAGAGGCAGCAATCCGGCCTCCGACGAGATCAGTTCCGCCTGCGCCGCCGACTCCGCTGTGGATCTCGGCTGCGTGGATACTACTGTGAGCAAGTTCCCGGAGATGCAGTACTCGCAAGCGAAGAGCGACGGCGACGGCGGCGGATGTGCGATTTGCTTGACGGATTTCAGAGAGAGAGAGTCGCTCCGGCTGCGGCTACTGCCGCATTGTGGACACGTGTTCCATGTCACGTGCATAGATCAGTGGCTGCGCCGGCAAACCACGTGTCCGATATGTAGAAATCCGGCTTTGCCGACGCCTAGCCCTCCTTATACGAATCCTTCGGCCGCCATTGCTCTTTCCAGTTAG

mRNA sequence

ATGGGATTTACAGAGGATTCAGATATTTTTTTATTTTGCATCCAAATCTCCATCGGCATCTTCTTCCTCGTTCTCATAGCCCTAGCTTACCACTGCAGACGCCGCATCCAAGTCGCCGCCGATCTCGGCGGCGTCGGCGACAGAGGCAGCAATCCGGCCTCCGACGAGATCAGTTCCGCCTGCGCCGCCGACTCCGCTGTGGATCTCGGCTGCGTGGATACTACTGTGAGCAAGTTCCCGGAGATGCAGTACTCGCAAGCGAAGAGCGACGGCGACGGCGGCGGATGTGCGATTTGCTTGACGGATTTCAGAGAGAGAGAGTCGCTCCGGCTGCGGCTACTGCCGCATTGTGGACACGTGTTCCATGTCACGTGCATAGATCAGTGGCTGCGCCGGCAAACCACGTGTCCGATATGTAGAAATCCGGCTTTGCCGACGCCTAGCCCTCCTTATACGAATCCTTCGGCCGCCATTGCTCTTTCCAGTTAG

Coding sequence (CDS)

ATGGGATTTACAGAGGATTCAGATATTTTTTTATTTTGCATCCAAATCTCCATCGGCATCTTCTTCCTCGTTCTCATAGCCCTAGCTTACCACTGCAGACGCCGCATCCAAGTCGCCGCCGATCTCGGCGGCGTCGGCGACAGAGGCAGCAATCCGGCCTCCGACGAGATCAGTTCCGCCTGCGCCGCCGACTCCGCTGTGGATCTCGGCTGCGTGGATACTACTGTGAGCAAGTTCCCGGAGATGCAGTACTCGCAAGCGAAGAGCGACGGCGACGGCGGCGGATGTGCGATTTGCTTGACGGATTTCAGAGAGAGAGAGTCGCTCCGGCTGCGGCTACTGCCGCATTGTGGACACGTGTTCCATGTCACGTGCATAGATCAGTGGCTGCGCCGGCAAACCACGTGTCCGATATGTAGAAATCCGGCTTTGCCGACGCCTAGCCCTCCTTATACGAATCCTTCGGCCGCCATTGCTCTTTCCAGTTAG

Protein sequence

MGFTEDSDIFLFCIQISIGIFFLVLIALAYHCRRRIQVAADLGGVGDRGSNPASDEISSACAADSAVDLGCVDTTVSKFPEMQYSQAKSDGDGGGCAICLTDFRERESLRLRLLPHCGHVFHVTCIDQWLRRQTTCPICRNPALPTPSPPYTNPSAAIALSS

Homology

[Close]

BLAST of Lag0040383 vs. NCBI nr
Match: CAA3021750.1 (RING-H2 finger ATL70-like [Olea europaea subsp. europaea])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 0


Query: 4   TEDSDIFLFCIQISIGIFFLV--LIALAYHCRRRIQVAADLGGVGDRGSNPASDEISSAC 63
           +E+   F + I +S+GI  L+  +   +Y+C R   +           + PASD +    
Sbjct: 13  SENISGFGYGIGVSVGILLLITTITVASYYCTRNTTIVPPRRA----AAPPASDAVQ--- 72

Query: 64  AADSAVDLGCVDTTVSKFPEMQYSQAK---SDGDGGGCAICLTDFRERESLRLRLLPHCG 123
              S +D+G  +TT++ +P+M YS+AK    D     C+ICL D++  +   LR LP CG
Sbjct: 73  --HSVIDVGLDETTITSYPKMLYSEAKVNHKDSTATCCSICLADYKNSD--MLRGLPDCG 132

Query: 124 HVFHVTCIDQWLRRQTTCPICRNPALPTPSP 150
           H+FH+ C+D WLR   TCP+CRN  +PTP P
Sbjct: 133 HLFHLRCVDPWLRMHPTCPVCRNSPMPTPLP 152

[Close]

BLAST of Lag0040383 vs. NCBI nr
Match: XP_022854858.1 (RING-H2 finger protein ATL70-like [Olea europaea var. sylvestris])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 0


Query: 4   TEDSDIFLFCIQISIGIFFLV--LIALAYHCRRRIQVAADLGGVGDRGSNPASDEISSAC 63
           +E+   F + I +S+GI  L+  +   +Y+C R   +           + PASD +    
Sbjct: 13  SENISGFGYGIGVSVGILLLITTITVASYYCTRNTTIVPPRRA----AAPPASDAVQ--- 72

Query: 64  AADSAVDLGCVDTTVSKFPEMQYSQAK---SDGDGGGCAICLTDFRERESLRLRLLPHCG 123
              S +D+G  +TT++ +P+M YS+AK    D     C+ICL D++  +   LR LP CG
Sbjct: 73  --HSVIDVGLDETTITSYPKMLYSEAKVNHKDSTATCCSICLADYKNSD--MLRGLPDCG 132

Query: 124 HVFHVTCIDQWLRRQTTCPICRNPALPTPSP 150
           H+FH+ C+D WLR   TCP+CRN  +PTP P
Sbjct: 133 HLFHLRCVDPWLRMHPTCPVCRNSPMPTPLP 152

[Close]

BLAST of Lag0040383 vs. NCBI nr
Match: RVW24613.1 (RING-H2 finger protein ATL70 [Vitis vinifera])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 57/140 (40.71%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 14  IQISIGIFFLV--LIALAYHCRRRIQV-AADLGGVGDRGSNPASDEISSACAADSAVDLG 73
           I +S+GI  L+  +   +Y C R  QV AA  GG G R   P  +E          VD+G
Sbjct: 23  IGVSVGILLLITTITLASYFCTRPQQVPAAAYGGGGLREQQPVVEEF--------VVDVG 82

Query: 74  CVDTTVSKFPEMQYSQAK---SDGDGGGCAICLTDFRERESLRLRLLPHCGHVFHVTCID 133
             + T+  +P+M YS+AK    D     C+ICL D++  +   LRLLP CGH+FH+ C+D
Sbjct: 83  LDEATILSYPKMVYSEAKLQHKDSTAACCSICLADYKGSD--MLRLLPDCGHLFHLKCVD 142

Query: 134 QWLRRQTTCPICRNPALPTP 148
            WLR   TCP+CR   +PTP
Sbjct: 143 PWLRLHPTCPVCRTSPMPTP 152

[Close]

BLAST of Lag0040383 vs. NCBI nr
Match: XP_034694481.1 (RING-H2 finger protein ATL70 [Vitis riparia])

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-18
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 14  IQISIGIFFLV--LIALAYHCRRRIQV--AADLGGVGDRGSNPASDEISSACAADSAVDL 73
           I +S+GI  L+  +   +Y C R  QV  AA  GG G R   P  +E          VD+
Sbjct: 23  IGVSVGILLLITTITLASYFCTRPQQVPAAAYGGGGGLREQQPVVEEF--------VVDV 82

Query: 74  GCVDTTVSKFPEMQYSQAK---SDGDGGGCAICLTDFRERESLRLRLLPHCGHVFHVTCI 133
           G  + T+  +P+M YS+AK    D     C+ICL D+++ +   LRLLP CGH+FH+ C+
Sbjct: 83  GLDEATILSYPKMVYSEAKLQHKDSTAACCSICLADYKDSD--MLRLLPDCGHLFHLKCV 142

Query: 134 DQWLRRQTTCPICRNPALPTP 148
           D WLR   TCP+CR   +PTP
Sbjct: 143 DPWLRLHPTCPVCRTSPMPTP 153

[Close]

BLAST of Lag0040383 vs. NCBI nr
Match: CAN70851.1 (hypothetical protein VITISV_030130 [Vitis vinifera])

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18
Identity = 57/140 (40.71%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 14  IQISIGIFFLV--LIALAYHCRRRIQV-AADLGGVGDRGSNPASDEISSACAADSAVDLG 73
           I +S+GI  L+  +   +Y C R  QV AA  GG G R   P  +E          VD+G
Sbjct: 23  IGVSVGILLLITTITLASYFCTRPQQVPAAAYGGGGLRLQQPVVEEF--------VVDVG 82

Query: 74  CVDTTVSKFPEMQYSQAK---SDGDGGGCAICLTDFRERESLRLRLLPHCGHVFHVTCID 133
             + T+  +P+M YS+AK    D     C+ICL D++  +   LRLLP CGH+FH+ C+D
Sbjct: 83  LDEATILSYPKMVYSEAKLQHKDSTAACCSICLADYKGSD--MLRLLPDCGHLFHLKCVD 142

Query: 134 QWLRRQTTCPICRNPALPTP 148
            WLR   TCP+CR   +PTP
Sbjct: 143 PWLRLHPTCPVCRTSPMPTP 152

[Close]

BLAST of Lag0040383 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-16
Identity = 55/167 (32.93%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 10  FLFCIQISIGIFFL---VLIALAYHCRRRIQVAADLGGVGDRGSNPASDEISSACAADSA 69
           F + I I++G   L   VL++    CR   +    +   GDRG +     I      D+ 
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 70  ------VDLGCVDTTVSKFPEMQYSQ----AKSDGDGGG----CAICLTDFRERESLRLR 129
                 V +G     ++ +P+  +S+    A SDG GGG    C+ICL +++E E   LR
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAE--MLR 154

Query: 130 LLPHCGHVFHVTCIDQWLRRQTTCPICRNPALPTP-SPPYTNPSAAI 159
           ++P C H FH+ C+D WL+   +CP+CRN  LPTP S P + P + +
Sbjct: 155 MMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEV 199

[Close]

BLAST of Lag0040383 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 4   TEDSDIFLFCIQISIGIFFLV--LIALAYHCRRRIQVAADLGGVGDRGSNPASDEISSAC 63
           T+D   F + I +SIG+  L+  +   +Y+C R               S+P+     S  
Sbjct: 58  TDDIGGFRYGIGVSIGVLLLITTITLTSYYCTR-----------NQLSSSPSQTNQDSTR 117

Query: 64  AADS----AVDL--GCVDTTVSKFPEMQYSQAKSDGDGGGCAICLTDFRERESLRLRLLP 123
                    +D+  G  + T+  +P++ YS+AK       CAICL D++ +    LR LP
Sbjct: 118 IHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKH--LLRQLP 177

Query: 124 HCGHVFHVTCIDQWLRRQTTCPICRNPALPTP 148
            C H+FH+ CID WLR   TCP+CR   LPTP
Sbjct: 178 DCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTP 196

[Close]

BLAST of Lag0040383 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-14
Identity = 51/127 (40.16%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 20  IFFLVLIALAY-HCRRRIQVAADLGGVGDRGSNPASDEISSAC--AADSAVDLGCVDTTV 79
           +FF+   ++ + HC           GV D G +PA    S A   AA   +D+  V+T  
Sbjct: 60  LFFMGFFSIYFRHC----------SGVPDAGVSPAGGARSRATVNAAARGLDVSVVET-- 119

Query: 80  SKFPEMQYSQAKSDGDGGG---CAICLTDFRERESLRLRLLPHCGHVFHVTCIDQWLRRQ 139
             FP   YS  K+   G G   CAICL +F + E+  LRLLP C HVFH  CID WL   
Sbjct: 120 --FPTFLYSDVKTQKLGKGELECAICLNEFEDDET--LRLLPKCDHVFHPHCIDAWLEAH 170

Query: 140 TTCPICR 141
            TCP+CR
Sbjct: 180 VTCPVCR 170

[Close]

BLAST of Lag0040383 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-13
Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 10  FLFCIQISIGIFFLVLIALAYHCRRRIQVAADLGGVGDRGSNPASDEISSACAADSAVDL 69
           F F + + I +  +VL+ L Y  RR      D   +G  G  P ++ +S+A       +L
Sbjct: 22  FTFIVCVPICVILIVLLVL-YIMRRNSNTNVDWSSLG--GFVPTNNNLSTA-------EL 81

Query: 70  GCVDTTVSKFPEMQYSQAKSDGDGGGCAICLTDFRERESLRLRLLPHCGHVFHVTCIDQW 129
           G         P + Y ++ +  D   C++CL D++  E  +L+ +P CGH FH+ CID W
Sbjct: 82  GLSKDIREMLPIVIYKESFTVND-TQCSVCLGDYQAEE--KLQQMPSCGHTFHMECIDLW 141

Query: 130 LRRQTTCPICRNPALPTPSPPYTNPSAAIALS 162
           L   TTCP+CR   +P PS   ++ S  I  S
Sbjct: 142 LTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSS 160

[Close]

BLAST of Lag0040383 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 20  IFFLVLIALAYHCRRRIQVAADLGGVGDRGSNPASDEISSACAADSAVDLGCVDTTV-SK 79
           +F  V++ L +H   R         +  R S       ++     S+  L  +D TV  K
Sbjct: 36  LFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSLAAARDPTQSSSSLSPLDPTVLEK 95

Query: 80  FPEMQYSQAKSDGDGGGCAICLTDFRERESLRLRLLPHCGHVFHVTCIDQWLRRQTTCPI 139
            P   YS    +     C++CL++F E +    R+LP CGHVFHV CID W R +++CP+
Sbjct: 96  IPIFVYSVKTHESPLEECSVCLSEFEEDD--EGRVLPKCGHVFHVDCIDTWFRSRSSCPL 155

Query: 140 CRNPALPTPSPPYTNPSAAIAL 161
           CR P    P+ P T P    A+
Sbjct: 156 CRAPV--QPAQPVTEPEPVAAV 173

The following BLAST results are available for this feature:

BLAST of Lag0040383 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA3021750.1	1.3e-18	36.42	RING-H2 finger ATL70-like [Olea europaea subsp. europaea]	[more]
XP_022854858.1	1.3e-18	36.42	RING-H2 finger protein ATL70-like [Olea europaea var. sylvestris]	[more]
RVW24613.1	1.3e-18	40.71	RING-H2 finger protein ATL70 [Vitis vinifera]	[more]
XP_034694481.1	1.6e-18	40.43	RING-H2 finger protein ATL70 [Vitis riparia]	[more]
CAN70851.1	2.1e-18	40.71	hypothetical protein VITISV_030130 [Vitis vinifera]	[more]

BLAST of Lag0040383 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82353	3.5e-16	32.93	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q8RX29	1.0e-15	33.55	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q8RXX9	4.3e-14	40.16	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
Q9SN27	6.2e-13	32.24	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
Q9LZJ6	1.4e-12	32.39	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 96..139 e-value: 1.7E-8 score: 44.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 96..140 e-value: 2.6E-14 score: 53.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 96..140 score: 13.182669
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 71..144 e-value: 8.3E-23 score: 81.4
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 10..150
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 96..140 e-value: 9.67079E-16 score: 65.0239
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 78..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040383.1	Lag0040383.1	mRNA