Lag0040345 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040345
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTwo-component response regulator ORR9-like
Locationchr13: 4036460 .. 4036835 (+)
RNA-Seq ExpressionLag0040345
SyntenyLag0040345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTATTGGTTTGCTCATTCTGTTTTTTATTTTGTTTTGTGTTTCTTTGTTGTTACTACTGTTGATTCTGGTAGCAAGGCCTTGGAGTTTCTGGGTTTGATTCAAGAAGATGAACATACGAACTTGAAACCCCCTTCTTCTTCTTCTCTTTCCTCCAACAATCATCATCAGGTTATTCAATTTCAAATTCATTTCTCCCATTTCAATTCCATTCCATTTCCCTTCTCTGTTTCTGAAATTTTGTGAGGTTTTGTTTGTGTAGGAAGTGGAAGTGAATCTTATCATTACTGATTACTGCATGCCTGGAATGACTGGTTTCGATTTGCTCAAGAAAGTTAAGGTAAAAGAAGAAAGAAATTCTATGGTTTCTTAG

mRNA sequence

ATGTGGTATTGGTTTGCTCATTCTGTTTTTTATTTTGTTTTGTGTTTCTTTGTTGTTACTACTGTTGATTCTGGTAGCAAGGCCTTGGAGTTTCTGGGTTTGATTCAAGAAGATGAACATACGAACTTGAAACCCCCTTCTTCTTCTTCTCTTTCCTCCAACAATCATCATCAGGAAGTGGAAGTGAATCTTATCATTACTGATTACTGCATGCCTGGAATGACTGGTTTCGATTTGCTCAAGAAAGTTAAGGTAAAAGAAGAAAGAAATTCTATGGTTTCTTAG

Coding sequence (CDS)

ATGTGGTATTGGTTTGCTCATTCTGTTTTTTATTTTGTTTTGTGTTTCTTTGTTGTTACTACTGTTGATTCTGGTAGCAAGGCCTTGGAGTTTCTGGGTTTGATTCAAGAAGATGAACATACGAACTTGAAACCCCCTTCTTCTTCTTCTCTTTCCTCCAACAATCATCATCAGGAAGTGGAAGTGAATCTTATCATTACTGATTACTGCATGCCTGGAATGACTGGTTTCGATTTGCTCAAGAAAGTTAAGGTAAAAGAAGAAAGAAATTCTATGGTTTCTTAG

Protein sequence

MWYWFAHSVFYFVLCFFVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKVKEERNSMVS
Homology
[Close]
BLAST of Lag0040345 vs. NCBI nr
Match: XP_022983868.1 (two-component response regulator ORR9 isoform X1 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 7.5e-24
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 17  FVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTG 76
           + VTTVDSGSKALEFLGLI+E +HTN K PSSSS SSN HHQEVEVNLIITDYCMPGMTG
Sbjct: 33  YQVTTVDSGSKALEFLGLIEEHQHTNFKSPSSSSSSSNIHHQEVEVNLIITDYCMPGMTG 92

Query: 77  FDLLKKVK 85
           FDLLKKVK
Sbjct: 93  FDLLKKVK 100

[Close]
BLAST of Lag0040345 vs. NCBI nr
Match: XP_022983869.1 (two-component response regulator ORR9 isoform X2 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 7.5e-24
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 17  FVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTG 76
           + VTTVDSGSKALEFLGLI+E +HTN K PSSSS SSN HHQEVEVNLIITDYCMPGMTG
Sbjct: 33  YQVTTVDSGSKALEFLGLIEEHQHTNFKSPSSSSSSSNIHHQEVEVNLIITDYCMPGMTG 92

Query: 77  FDLLKKVK 85
           FDLLKKVK
Sbjct: 93  FDLLKKVK 100

[Close]
BLAST of Lag0040345 vs. NCBI nr
Match: XP_038903262.1 (two-component response regulator ORR9 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 9.8e-24
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 0 

Query: 17  FVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSL-SSNNHHQEVEVNLIITDYCMPGMT 76
           + VTTVDSGSKALEFLGLIQE +HTN K PS+SS  SSNNHHQEVEVNLIITDYCMPGMT
Sbjct: 33  YQVTTVDSGSKALEFLGLIQEHQHTNFKSPSNSSFSSSNNHHQEVEVNLIITDYCMPGMT 92

Query: 77  GFDLLKKVK 85
           GFDLLKKVK
Sbjct: 93  GFDLLKKVK 101

[Close]
BLAST of Lag0040345 vs. NCBI nr
Match: XP_023527965.1 (two-component response regulator ORR9 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 17  FVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTG 76
           + VTTVDSGSKALEFLGLI+E +HTN K PSSSS SSN HHQEVEVNLIITDYCMPGMTG
Sbjct: 72  YQVTTVDSGSKALEFLGLIEEHQHTNFKSPSSSS-SSNIHHQEVEVNLIITDYCMPGMTG 131

Query: 77  FDLLKKVK 85
           FDLLKKVK
Sbjct: 132 FDLLKKVK 138

[Close]
BLAST of Lag0040345 vs. NCBI nr
Match: XP_023527966.1 (two-component response regulator ORR9 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 17  FVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTG 76
           + VTTVDSGSKALEFLGLI+E +HTN K PSSSS SSN HHQEVEVNLIITDYCMPGMTG
Sbjct: 72  YQVTTVDSGSKALEFLGLIEEHQHTNFKSPSSSS-SSNIHHQEVEVNLIITDYCMPGMTG 131

Query: 77  FDLLKKVK 85
           FDLLKKVK
Sbjct: 132 FDLLKKVK 138

[Close]
BLAST of Lag0040345 vs. ExPASy Swiss-Prot
Match: Q4GZK7 (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=RR4 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-16
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 17 FVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTG 76
          + VTTVDSGSKALE LGL  E + +     SSS  SS+  HQE++VNLIITDYCMPGMTG
Sbjct: 34 YQVTTVDSGSKALELLGLRDEGDDS-----SSSPSSSSPDHQEIDVNLIITDYCMPGMTG 93

Query: 77 FDLLKKVK 85
          +DLLK+VK
Sbjct: 94 YDLLKRVK 96

[Close]
BLAST of Lag0040345 vs. ExPASy Swiss-Prot
Match: Q942A1 (Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica OX=39947 GN=RR4 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-16
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 17 FVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTG 76
          + VTTVDSGSKALE LGL  E + +     SSS  SS+  HQE++VNLIITDYCMPGMTG
Sbjct: 34 YQVTTVDSGSKALELLGLRDEGDDS-----SSSPSSSSPDHQEIDVNLIITDYCMPGMTG 93

Query: 77 FDLLKKVK 85
          +DLLK+VK
Sbjct: 94 YDLLKRVK 96

[Close]
BLAST of Lag0040345 vs. ExPASy Swiss-Prot
Match: O80365 (Two-component response regulator ARR8 OS=Arabidopsis thaliana OX=3702 GN=ARR8 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-16
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 19 VTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTGFD 78
          VTTVDSGSKALEFLGL  +D   N      +  +S   HQEVE+NLIITDYCMPGMTG+D
Sbjct: 35 VTTVDSGSKALEFLGLRVDDNDPN------ALSTSPQIHQEVEINLIITDYCMPGMTGYD 94

Query: 79 LLKKVK 85
          LLKKVK
Sbjct: 95 LLKKVK 94

[Close]
BLAST of Lag0040345 vs. ExPASy Swiss-Prot
Match: O80366 (Two-component response regulator ARR9 OS=Arabidopsis thaliana OX=3702 GN=ARR9 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.0e-16
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 19 VTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTGFD 78
          VTTVDSGSKALEFLGL Q    T+   P++ S +  N HQ VEVNLIITDYCMPGMTG+D
Sbjct: 35 VTTVDSGSKALEFLGLRQS---TDSNDPNAFSKAPVN-HQVVEVNLIITDYCMPGMTGYD 94

Query: 79 LLKKVK 85
          LLKKVK
Sbjct: 95 LLKKVK 96

[Close]
BLAST of Lag0040345 vs. ExPASy Swiss-Prot
Match: Q4GZK2 (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=RR9 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-15
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 0 

Query: 17 FVVTTVDSGSKALEFLGLIQEDEHTNLKPPSSSSLSSNNHHQEVEVNLIITDYCMPGMTG 76
          F VTTVDSGSKALEFLGL   ++         S +S+ +  QEV VNLIITDYCMPGMTG
Sbjct: 33 FQVTTVDSGSKALEFLGLHDHED---------SPISTQSDQQEVAVNLIITDYCMPGMTG 91

Query: 77 FDLLKKVK 85
          +DLLKK+K
Sbjct: 93 YDLLKKIK 91

The following BLAST results are available for this feature:
BLAST of Lag0040345 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022983868.17.5e-2486.76two-component response regulator ORR9 isoform X1 [Cucurbita maxima][more]
XP_022983869.17.5e-2486.76two-component response regulator ORR9 isoform X2 [Cucurbita maxima][more]
XP_038903262.19.8e-2486.96two-component response regulator ORR9 [Benincasa hispida][more]
XP_023527965.11.1e-2286.76two-component response regulator ORR9 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023527966.11.1e-2286.76two-component response regulator ORR9 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Lag0040345 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4GZK72.1e-1666.18Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
Q942A12.1e-1666.18Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
O803654.6e-1668.18Two-component response regulator ARR8 OS=Arabidopsis thaliana OX=3702 GN=ARR8 PE... [more]
O803666.0e-1671.21Two-component response regulator ARR9 OS=Arabidopsis thaliana OX=3702 GN=ARR9 PE... [more]
Q4GZK23.0e-1563.24Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2300coord: 11..93
e-value: 1.2E-9
score: 39.8
NoneNo IPR availablePANTHERPTHR43874TWO-COMPONENT RESPONSE REGULATORcoord: 17..87
NoneNo IPR availablePANTHERPTHR43874:SF81TWO-COMPONENT RESPONSE REGULATOR ARR9coord: 17..87
IPR001789Signal transduction response regulator, receiver domainPROSITEPS50110RESPONSE_REGULATORYcoord: 1..94
score: 12.484722
IPR011006CheY-like superfamilySUPERFAMILY52172CheY-likecoord: 18..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040345.1Lag0040345.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity