|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTTCCATTGTCTCATCCGCCGCTGTTGCCTCCGTGAACCGGGCCTCCCCTGCCCAAGCTAGCATGGTGGCACCCTTCACTGGCCTGAAATCCACCGCCGGCTTCCCCATCACCCGCAAGAGCAACGACATCACCACTCTCGCCAGCAACGGTGGAAGAGTTCAGTGCATGAAGGTATAAATCATGGGTATATACTATATAGGGTAATTATATTGTATAATGAATGAATTAATTGTTTTTGTGATGTGTAAAAATTAAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTTTGTCGTACCTGCCTGATCTCTCAATGGACCAAATGGCTAAGCAAATTGAATACCTAATCAAGAATGGGTGGGTTCCGTGCCTTGAGTTCGAAGTGGAGGTAATGTTGAATTAAATAGAGATGAGTAAAGGAAGAAATTAATTGTGTATTAGTATTATTGATGGAATTGTTGAATGGAATATGTACTTGTGAAGCGCAGAAGGGATGGGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGGTGCTGGACCATGTGGAAGCTGCCCATGTACGGGTGCACCGATGCCGTTCAGGTGTTGAAGGAGATCGATGAGTGCAAGAAGGAATACCCACAAGCATGGATCAGGGTCATCGGATTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATCGTCTACAAGCCCCCCAGCTGA mRNA sequence ATGGCTTCCATTGTCTCATCCGCCGCTGTTGCCTCCGTGAACCGGGCCTCCCCTGCCCAAGCTAGCATGGTGGCACCCTTCACTGGCCTGAAATCCACCGCCGGCTTCCCCATCACCCGCAAGAGCAACGACATCACCACTCTCGCCAGCAACGGTGGAAGAGTTCAGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTTTGTCGTACCTGCCTGATCTCTCAATGGACCAAATGGCTAAGCAAATTGAATACCTAATCAAGAATGGGTGGGTTCCGTGCCTTGAGTTCGAAGTGGAGAAGGGATGGGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGGTGCTGGACCATGTGGAAGCTGCCCATGTACGGGTGCACCGATGCCGTTCAGGTGTTGAAGGAGATCGATGAGTGCAAGAAGGAATACCCACAAGCATGGATCAGGGTCATCGGATTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATCGTCTACAAGCCCCCCAGCTGA Coding sequence (CDS) ATGGCTTCCATTGTCTCATCCGCCGCTGTTGCCTCCGTGAACCGGGCCTCCCCTGCCCAAGCTAGCATGGTGGCACCCTTCACTGGCCTGAAATCCACCGCCGGCTTCCCCATCACCCGCAAGAGCAACGACATCACCACTCTCGCCAGCAACGGTGGAAGAGTTCAGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTTTGTCGTACCTGCCTGATCTCTCAATGGACCAAATGGCTAAGCAAATTGAATACCTAATCAAGAATGGGTGGGTTCCGTGCCTTGAGTTCGAAGTGGAGAAGGGATGGGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGGTGCTGGACCATGTGGAAGCTGCCCATGTACGGGTGCACCGATGCCGTTCAGGTGTTGAAGGAGATCGATGAGTGCAAGAAGGAATACCCACAAGCATGGATCAGGGTCATCGGATTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATCGTCTACAAGCCCCCCAGCTGA Protein sequence MASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSNDITTLASNGGRVQCMKVWPPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYDGRCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPPS
Homology
BLAST of Lag0040298 vs. NCBI nr
Match: XP_038892640.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84 Identity = 151/177 (85.31%), Postives = 165/177 (93.22%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSNDITTLASNGGRVQCMKVW 61
+SIVSSAAVASVNRASPAQASMVAPFTGLKS A FPITRK+NDITTLASNGGRVQCMKVW
Sbjct: 3 SSIVSSAAVASVNRASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQCMKVW 62
Query: 62 PPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYDG 121
PPLGLKKFETLSYLPDL Q+AK++EYL++ GWVPCLEF++ G+VYRENHRSPGYYDG
Sbjct: 63 PPLGLKKFETLSYLPDLDEAQLAKEVEYLLRKGWVPCLEFDIHDGFVYRENHRSPGYYDG 122
Query: 122 RCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
R WTMWKLPM+GCTDA QV+KEI+E KKEYP A+IRVIGFDNVRQVQCISFIVYKPP
Sbjct: 123 RYWTMWKLPMFGCTDAAQVIKEINEAKKEYPDAFIRVIGFDNVRQVQCISFIVYKPP 179
BLAST of Lag0040298 vs. NCBI nr
Match: WP_082711130.1 (MULTISPECIES: ribulose-1,5-bisphosphate carboxylase small subunit [Bacteria]) HSP 1 Score: 320.9 bits (821), Expect = 7.2e-84 Identity = 150/177 (84.75%), Postives = 164/177 (92.66%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSNDITTLASNGGRVQCMKVW 61
+SIVSSAAVASVNRASPAQASMVAPFTGLKS A FPITRK+NDITTLASNGGRVQCMKVW
Sbjct: 3 SSIVSSAAVASVNRASPAQASMVAPFTGLKSGAAFPITRKNNDITTLASNGGRVQCMKVW 62
Query: 62 PPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYDG 121
PPLGLKKFETLSYLPDL Q+AK++EYL++ GWVPCLEF+V G+VYRENHRSPGYYDG
Sbjct: 63 PPLGLKKFETLSYLPDLDQTQLAKEVEYLLRKGWVPCLEFDVHDGFVYRENHRSPGYYDG 122
Query: 122 RCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
R WTMWKLPM+GCTDA QV++EI+E KK YP A+IRVIGFDNVRQVQCISFIVYKPP
Sbjct: 123 RYWTMWKLPMFGCTDAAQVIQEIEEAKKHYPDAFIRVIGFDNVRQVQCISFIVYKPP 179
BLAST of Lag0040298 vs. NCBI nr
Match: XP_022957356.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6601287.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032075.1 Ribulose bisphosphate carboxylase small chain, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 318.2 bits (814), Expect = 4.7e-83 Identity = 148/178 (83.15%), Postives = 165/178 (92.70%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSNDITTLASNGGRVQCMKVW 61
+SIVSSAAVASVNRASPAQASMVAPF GLKSTA FP+TRK+NDITTLASNG RV+CMKVW
Sbjct: 3 SSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMKVW 62
Query: 62 PPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYDG 121
PPLGLKKFETLSYLPDL+ +Q+ K+I YL+++GWVPC+EFE+EKG+VYRENHRSPGYYDG
Sbjct: 63 PPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122
Query: 122 RCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPPS 180
R WTMWKLPM+GCTD QV EI+E KKEYP A+IRVIGFDNVRQVQCISFIVYKPPS
Sbjct: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPPS 180
BLAST of Lag0040298 vs. NCBI nr
Match: WP_064723948.1 (ribulose-1,5-bisphosphate carboxylase small subunit, partial [Paenarthrobacter nicotinovorans]) HSP 1 Score: 317.8 bits (813), Expect = 6.1e-83 Identity = 149/176 (84.66%), Postives = 163/176 (92.61%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSNDITTLASNGGRVQCMKVW 61
+SIVSSAAVASVNRASPAQASMVAPFTGLKS A FPITRK+NDITTLASNGGRVQCMKVW
Sbjct: 3 SSIVSSAAVASVNRASPAQASMVAPFTGLKSGAAFPITRKNNDITTLASNGGRVQCMKVW 62
Query: 62 PPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYDG 121
PPLGLKKFETLSYLPDL Q+AK++EYL++ GWVPCLEF+V G+VYRENHRSPGYYDG
Sbjct: 63 PPLGLKKFETLSYLPDLDQTQLAKEVEYLLRKGWVPCLEFDVHDGFVYRENHRSPGYYDG 122
Query: 122 RCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
R WTMWKLPM+GCTDA QV++EI+E KK YP A+IRVIGFDNVRQVQCISFIVYKP
Sbjct: 123 RYWTMWKLPMFGCTDAAQVIQEIEEAKKHYPDAFIRVIGFDNVRQVQCISFIVYKP 178
BLAST of Lag0040298 vs. NCBI nr
Match: XP_023513414.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023513481.1 ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 316.6 bits (810), Expect = 1.4e-82 Identity = 148/178 (83.15%), Postives = 165/178 (92.70%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSNDITTLASNGGRVQCMKVW 61
+SIVSSAAVASVNRASPAQASMVAPF GLKSTAGFP+TRK+NDITTLASNG RV+CMKVW
Sbjct: 3 SSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMKVW 62
Query: 62 PPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYDG 121
PPLGLKKFETLSYLPDL+ +Q+ K+I YL+++GWVPC+EFE+EKG+VYRENHRSPGYYDG
Sbjct: 63 PPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122
Query: 122 RCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPPS 180
R WTMWKLPM+GCTD QV EI+E KKEYP A+IRVIGFDNVRQVQCISFIVYKP S
Sbjct: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
BLAST of Lag0040298 vs. ExPASy Swiss-Prot
Match: P08474 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativus OX=3659 GN=RBCS PE=2 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 2.0e-81 Identity = 140/177 (79.10%), Postives = 165/177 (93.22%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSN-DITTLASNGGRVQCMKV 61
+SI+SSAAVASVN ASPAQASMVAPFTGLKS+AGFPITRK+N DITTLASN G+VQCMKV
Sbjct: 3 SSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKV 62
Query: 62 WPPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYD 121
WPPLGL+KFETLSYLPD+S +Q++K+ +YL++NGWVPC+EF++ G+VYRENHRSPG+YD
Sbjct: 63 WPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYD 122
Query: 122 GRCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
GR WTMWKLPM+GCTD+ QV++EI+E KKEYP A+IRVIGFDNVRQVQCISFI YKP
Sbjct: 123 GRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
BLAST of Lag0040298 vs. ExPASy Swiss-Prot
Match: Q39746 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Flaveria pringlei OX=4226 GN=RBCS4 PE=2 SV=1) HSP 1 Score: 292.4 bits (747), Expect = 3.6e-78 Identity = 134/177 (75.71%), Postives = 158/177 (89.27%), Query Frame = 0
Query: 1 MASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSNDITTLASNGGRVQCMKV 60
MASI S+ VA+V+RA+PAQA+MVAPFTGLKS A FP T+K+ND +TL SNGGRVQCMKV
Sbjct: 1 MASI--SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKANDFSTLPSNGGRVQCMKV 60
Query: 61 WPPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYD 120
WPPLG KK+ETLSYLP+L+ Q+AK+++YL++N WVPCLEFE+E G+VYREN RSPGYYD
Sbjct: 61 WPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYD 120
Query: 121 GRCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
GR WTMWKLPM+GCTD+ QV+KE+ ECKKEYPQAWIR+IGFDNVRQVQCISFI KP
Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175
BLAST of Lag0040298 vs. ExPASy Swiss-Prot
Match: P32764 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 6 OS=Solanum tuberosum OX=4113 GN=RBCS6 PE=3 SV=1) HSP 1 Score: 292.4 bits (747), Expect = 3.6e-78 Identity = 136/178 (76.40%), Postives = 159/178 (89.33%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSN--DITTLASNGGRVQCMK 61
+SIVSSAAVA+ R++ AQASMVAPFTGLKS A FP+T+K+N DIT+LASNGGRV+CM+
Sbjct: 3 SSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQ 62
Query: 62 VWPPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYY 121
VWPP+ +KK+ETLSYLPDLS +Q+ K++EYL+KNGWVPCLEFE E G+VYRENH+SPGYY
Sbjct: 63 VWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYY 122
Query: 122 DGRCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
DGR WTMWKLPM+GCTDA QVL E+ E KK YPQAWIR+IGFDNVRQVQCISFI YKP
Sbjct: 123 DGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
BLAST of Lag0040298 vs. ExPASy Swiss-Prot
Match: P26576 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Solanum tuberosum OX=4113 GN=RBCS4 PE=3 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.0e-77 Identity = 135/177 (76.27%), Postives = 159/177 (89.83%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSN-DITTLASNGGRVQCMKV 61
+SIVSSAAVA+ RA+ AQASMV PFTGLKSTA FP++RK N DIT++ASNGGRV+CM+V
Sbjct: 3 SSIVSSAAVAT--RANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQV 62
Query: 62 WPPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYD 121
WPP+ +KK+ETLSYLPDLS +Q+ K++EYL+KNGWVPCLEFE E G+VYREN++SPGYYD
Sbjct: 63 WPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYD 122
Query: 122 GRCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
GR WTMWKLPM+GCTDA QVL E++E KK YPQAWIR+IGFDNVRQVQCISFI YKP
Sbjct: 123 GRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of Lag0040298 vs. ExPASy Swiss-Prot
Match: P05349 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Solanum lycopersicum OX=4081 GN=RBCS4 PE=3 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 1.4e-77 Identity = 135/177 (76.27%), Postives = 156/177 (88.14%), Query Frame = 0
Query: 2 ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKSN-DITTLASNGGRVQCMKV 61
+SIVSSAAVA+ R + AQASMVAPFTGLKSTA FP++RK N DIT++ASNGGRV CM+V
Sbjct: 3 SSIVSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQV 62
Query: 62 WPPLGLKKFETLSYLPDLSMDQMAKQIEYLIKNGWVPCLEFEVEKGWVYRENHRSPGYYD 121
WPP+ +KK+ETLSYLPDLS +Q+ +IEYL+KNGWVPCLEFE E G+VYRENH+SPGYYD
Sbjct: 63 WPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYD 122
Query: 122 GRCWTMWKLPMYGCTDAVQVLKEIDECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
GR WTMWKLPM+GCTDA QVL E+ E KK YPQAW+R+IGFDNVRQVQCISFI YKP
Sbjct: 123 GRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038892640.1 | 1.4e-84 | 85.31 | ribulose bisphosphate carboxylase small chain, chloroplastic-like [Benincasa his... | [more] |
| WP_082711130.1 | 7.2e-84 | 84.75 | MULTISPECIES: ribulose-1,5-bisphosphate carboxylase small subunit [Bacteria] | [more] |
| XP_022957356.1 | 4.7e-83 | 83.15 | ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos... | [more] |
| WP_064723948.1 | 6.1e-83 | 84.66 | ribulose-1,5-bisphosphate carboxylase small subunit, partial [Paenarthrobacter n... | [more] |
| XP_023513414.1 | 1.4e-82 | 83.15 | ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pep... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P08474 | 2.0e-81 | 79.10 | Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativu... | [more] |
| Q39746 | 3.6e-78 | 75.71 | Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Flaveria pri... | [more] |
| P32764 | 3.6e-78 | 76.40 | Ribulose bisphosphate carboxylase small subunit, chloroplastic 6 OS=Solanum tube... | [more] |
| P26576 | 1.0e-77 | 76.27 | Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Solanum tube... | [more] |
| P05349 | 1.4e-77 | 76.27 | Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Solanum lyco... | [more] |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR024681 | Ribulose bisphosphate carboxylase, small subunit | PRINTS | PR00152 | RUBISCOSMALL | coord: 95..110
score: 66.94
coord: 117..146
score: 77.99
coord: 20..37
score: 76.22
coord: 46..64
score: 73.4
coord: 67..93
score: 63.6
coord: 151..177
score: 81.36 |
| IPR000894 | Ribulose bisphosphate carboxylase small subunit, domain | SMART | SM00961 | RuBisCO_small_2_a | coord: 68..177
e-value: 3.8E-34
score: 129.4 |
| IPR000894 | Ribulose bisphosphate carboxylase small subunit, domain | PFAM | PF00101 | RuBisCO_small | coord: 69..177
e-value: 2.5E-39
score: 133.2 |
| IPR000894 | Ribulose bisphosphate carboxylase small subunit, domain | CDD | cd03527 | RuBisCO_small | coord: 67..177
e-value: 1.71215E-59
score: 178.605 |
| IPR036385 | Ribulose bisphosphate carboxylase, small subunit superfamily | GENE3D | 3.30.190.10 | Ribulose bisphosphate carboxylase, small subunit | coord: 58..179
e-value: 2.1E-60
score: 204.2 |
| IPR036385 | Ribulose bisphosphate carboxylase, small subunit superfamily | SUPERFAMILY | 55239 | RuBisCO, small subunit | coord: 58..178 |
| IPR024680 | Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal | PFAM | PF12338 | RbcS | coord: 3..43
e-value: 1.9E-23
score: 82.4 |
| None | No IPR available | PANTHER | PTHR31262:SF14 | RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC | coord: 2..177 |
| None | No IPR available | PANTHER | PTHR31262 | RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC | coord: 2..177 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015977 |
carbon fixation |
| biological_process |
GO:0009853 |
photorespiration |
| biological_process |
GO:0015979 |
photosynthesis |
| cellular_component |
GO:0009506 |
plasmodesma |
| cellular_component |
GO:0009536 |
plastid |
|
