Lag0040160 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040160
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CLAVATA3/ESR (CLE)-related protein 9-like
Location	chr13: 2589767 .. 2590138 (+)
RNA-Seq Expression	Lag0040160
Synteny	Lag0040160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTTCTCTCTCTTTCTCTTCATCTTTTGCCACCAATGGCCAGCTCTTCATGATGATCTTGATTGTTCTACTCGTCTTTGTCACTTCATCCGCCACCAGACTCTCCAATGATAATTCTCCGCCTTCCTCCGCCGTGCCAGGAGCTCCTCCGACCGTCTCTCGCCGCCACCGTGAACCGCAGCTTCATCCTTGTGATGCTCTCACCCATGGAAACTCACGTTCTTTGTGTATTCACCTTCATAGAGTTCGCCAACGTCGCTTCCCCGTTCATGTCCCGCCGCCGTTGCTGACACGCAATGAGATTGACCCCCGATATGGCGTCGAGAAGAGACTCGTGCCATCGGGGCCAAACCCTCTTCACAACTGA

mRNA sequence

ATGAAAGCTTCTCTCTCTTTCTCTTCATCTTTTGCCACCAATGGCCAGCTCTTCATGATGATCTTGATTGTTCTACTCGTCTTTGTCACTTCATCCGCCACCAGACTCTCCAATGATAATTCTCCGCCTTCCTCCGCCGTGCCAGGAGCTCCTCCGACCGTCTCTCGCCGCCACCGTGAACCGCAGCTTCATCCTTGTGATGCTCTCACCCATGGAAACTCACGTTCTTTGTGTATTCACCTTCATAGAGTTCGCCAACGTCGCTTCCCCGTTCATGTCCCGCCGCCGTTGCTGACACGCAATGAGATTGACCCCCGATATGGCGTCGAGAAGAGACTCGTGCCATCGGGGCCAAACCCTCTTCACAACTGA

Coding sequence (CDS)

ATGAAAGCTTCTCTCTCTTTCTCTTCATCTTTTGCCACCAATGGCCAGCTCTTCATGATGATCTTGATTGTTCTACTCGTCTTTGTCACTTCATCCGCCACCAGACTCTCCAATGATAATTCTCCGCCTTCCTCCGCCGTGCCAGGAGCTCCTCCGACCGTCTCTCGCCGCCACCGTGAACCGCAGCTTCATCCTTGTGATGCTCTCACCCATGGAAACTCACGTTCTTTGTGTATTCACCTTCATAGAGTTCGCCAACGTCGCTTCCCCGTTCATGTCCCGCCGCCGTTGCTGACACGCAATGAGATTGACCCCCGATATGGCGTCGAGAAGAGACTCGTGCCATCGGGGCCAAACCCTCTTCACAACTGA

Protein sequence

MKASLSFSSSFATNGQLFMMILIVLLVFVTSSATRLSNDNSPPSSAVPGAPPTVSRRHREPQLHPCDALTHGNSRSLCIHLHRVRQRRFPVHVPPPLLTRNEIDPRYGVEKRLVPSGPNPLHN

Homology

[Close]

BLAST of Lag0040160 vs. NCBI nr
Match: KAG6574051.1 (CLAVATA3/ESR (CLE)-related protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38
Identity = 95/130 (73.08%), Postives = 102/130 (78.46%), Query Frame = 0


Query: 1   MKASLSFSSSFATNGQLFMMILIVLLVFVTSS-ATRLSNDNSPPSSAVPGAPPTVSRRH- 60
           MKASLS SSSFATNGQL MMILIVL +FV+SS ATRLS  N PPS+ VP A P   R H 
Sbjct: 1   MKASLSPSSSFATNGQLIMMILIVLFLFVSSSTATRLS--NHPPSTTVPEASPITPRHHP 60

Query: 61  --REPQLHPCDALTHGNSRSLCIHLHRVRQRRFPVHVPP---PLLTRNEIDPRYGVEKRL 120
              + QLHPCDALT  NSRSLCIHLHRV Q R PV++PP   PLLT N+IDPRYGVEKRL
Sbjct: 61  PRHKQQLHPCDALTRENSRSLCIHLHRVYQHRLPVYLPPLPLPLLTHNQIDPRYGVEKRL 120

Query: 121 VPSGPNPLHN 124
           VPSGPNPLHN
Sbjct: 121 VPSGPNPLHN 128

[Close]

BLAST of Lag0040160 vs. NCBI nr
Match: XP_038891849.1 (CLAVATA3/ESR (CLE)-related protein 10-like [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-35
Identity = 93/132 (70.45%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 1   MKASLSFS----SSFATNGQLFMMILIVLLVFVTSSATRLSNDNSPPSSAVPGAPPTVSR 60
           MKAS   S    SSF+TNG LFMMILIVLLVFVTSSA          S AVP A PT+S 
Sbjct: 1   MKASFFLSSSSLSSFSTNGHLFMMILIVLLVFVTSSA----------SIAVPEASPTIS- 60

Query: 61  RHREP-----QLHPCDALTHGNSRSLCIHLHRVRQRRFPVHVPPPLLTRNEIDPRYGVEK 120
            H+ P     QLHPCDALT  NSRSLCIHLHRV Q R PVHV PPLLT NEIDPRYGVEK
Sbjct: 61  HHQPPRGEVLQLHPCDALTRENSRSLCIHLHRVYQHRLPVHVLPPLLTHNEIDPRYGVEK 120

Query: 121 RLVPSGPNPLHN 124
           RLVPSGPNPLHN
Sbjct: 121 RLVPSGPNPLHN 121

[Close]

BLAST of Lag0040160 vs. NCBI nr
Match: KAG7032247.1 (CLAVATA3/ESR (CLE)-related protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-34
Identity = 91/128 (71.09%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 1   MKASL-SFSSSFATNGQLFMMILIVLLVFVTSSATRLSNDNSPPSSAVPGAPPTVSRR-- 60
           MKASL S +SS ATN QLFMMI ++LLVFV SSATRLS    PPS+ +P A PT S    
Sbjct: 1   MKASLSSCTSSSATNAQLFMMISMLLLVFVNSSATRLS--GYPPSTRMPDASPTTSTHPL 60

Query: 61  -HRE-PQLHPCDALTHGNSRSLCIHLHRVRQRRFPVHVPPPLLTRNEIDPRYGVEKRLVP 120
            HRE  QLHPCDALTH NSRSLCIHL+RV Q   PVHV P +LT N IDPRYGVEKRLVP
Sbjct: 61  PHRELQQLHPCDALTHENSRSLCIHLYRVYQHHLPVHV-PQMLTHNGIDPRYGVEKRLVP 120

Query: 121 SGPNPLHN 124
           SGPNPLHN
Sbjct: 121 SGPNPLHN 125

[Close]

BLAST of Lag0040160 vs. NCBI nr
Match: KAG6601466.1 (CLAVATA3/ESR (CLE)-related protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-33
Identity = 90/128 (70.31%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 1   MKASL-SFSSSFATNGQLFMMILIVLLVFVTSSATRLSNDNSPPSSAVPGAPPTVSRR-- 60
           MKASL S +SS ATN QLFMMI ++LLVFV SSATRLS    PPS+ +P A PT S    
Sbjct: 1   MKASLSSCTSSSATNAQLFMMISMLLLVFVNSSATRLS--GYPPSTRMPDASPTTSTHPL 60

Query: 61  -HRE-PQLHPCDALTHGNSRSLCIHLHRVRQRRFPVHVPPPLLTRNEIDPRYGVEKRLVP 120
            HR+  QLHPCDALTH NSRSLCIHL+RV Q   PVHV P +LT N IDPRYGVEKRLVP
Sbjct: 61  PHRKLQQLHPCDALTHENSRSLCIHLYRVYQHHLPVHV-PQMLTHNGIDPRYGVEKRLVP 120

Query: 121 SGPNPLHN 124
           SGPNPLHN
Sbjct: 121 SGPNPLHN 125

[Close]

BLAST of Lag0040160 vs. NCBI nr
Match: XP_022148995.1 (CLAVATA3/ESR (CLE)-related protein 9-like [Momordica charantia])

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 81/112 (72.32%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 19  MMILIVLLVFVTSSATRLSNDNSPPSSAVPGAPPTVSRRHR------EPQLHPCDALTHG 78
           M+I I+LLVFVTSSAT LSN     S+A+P A PT+SRRHR      EPQLHPCDA+T  
Sbjct: 1   MVIFILLLVFVTSSATSLSNAPPFSSTAMPDASPTISRRHRHQPPRHEPQLHPCDAITRP 60

Query: 79  NSRSLCIHLHRVRQRRFP-VHVPPPLLTRNEIDPRYGVEKRLVPSGPNPLHN 124
           NSRSLCIHLHRV   R P VHVPP LLT NEIDP+YGVEKRLVPSGPNPLHN
Sbjct: 61  NSRSLCIHLHRVYHHRLPVVHVPPALLTGNEIDPQYGVEKRLVPSGPNPLHN 112

[Close]

BLAST of Lag0040160 vs. ExPASy Swiss-Prot
Match: Q9FZE4 (CLAVATA3/ESR (CLE)-related protein 9 OS=Arabidopsis thaliana OX=3702 GN=CLE9 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-11
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 66  CDALTHGNSRSLCIHLHRVRQ--RRFPVHVPPPLLTRNEIDPRYGVEKRLVPSGPNPLHN 124
           CD+     +RS+CI L R+ +  R+ P+  PPP     EIDPRYGV+KRLVPSGPNPLHN
Sbjct: 65  CDSFIRPYARSMCIELQRIHRSSRKQPLLSPPP----PEIDPRYGVDKRLVPSGPNPLHN 120

[Close]

BLAST of Lag0040160 vs. ExPASy Swiss-Prot
Match: Q4PSX1 (CLAVATA3/ESR (CLE)-related protein 10 OS=Arabidopsis thaliana OX=3702 GN=CLE10 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-11
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 13  TNGQLFMMILIVLLVFVTSSATRLSNDNSPPSSAVPGAPPTVSRRHREPQLHPCDALTHG 72
           TN    + ILIV  +  T+ A   +  N    +      P V   +       C++ +  
Sbjct: 3   TNRNRPINILIVFFLLTTARAATRNWTNRTHRTV-----PKVQHAYYAYPHRSCESFSRP 62

Query: 73  NSRSLCIHLHRV-RQRRFPVHVPPPLLTRNEIDPRYGVEKRLVPSGPNPLHN 124
            +RS+CI L R+ R  R P+  PPP  T  EID RYGVEKRLVPSGPNPLHN
Sbjct: 63  YARSMCIELERIHRSSRQPLFSPPPPPT--EIDQRYGVEKRLVPSGPNPLHN 107

[Close]

BLAST of Lag0040160 vs. ExPASy Swiss-Prot
Match: Q6NMF0 (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana OX=3702 GN=CLE13 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 101 NEIDPRYGVEKRLVPSGPNPLHN 124
           +EIDPRYGVEKRLVPSGPNPLH+
Sbjct: 85  SEIDPRYGVEKRLVPSGPNPLHH 107

[Close]

BLAST of Lag0040160 vs. ExPASy Swiss-Prot
Match: A2X462 (Protein FON2 SPARE1 OS=Oryza sativa subsp. indica OX=39946 GN=FOS1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 30/72 (41.67%), Postives = 37/72 (51.39%), Query Frame = 0


Query: 53  TVSRRHREPQLHPCDALTHGNSRSLCIHLHRVRQRRFPVHVPPPLL-TRNEIDPRYGVEK 112
           T + RH     H      HG+      H HR   R     VPP       E+DPR+GV+K
Sbjct: 72  TTTDRHHHHHRH------HGH------HHHRGHDRWNRKGVPPTAAGPGEEVDPRFGVQK 131

Query: 113 RLVPSGPNPLHN 124
           RLVP+GPNPLH+
Sbjct: 132 RLVPTGPNPLHH 131

[Close]

BLAST of Lag0040160 vs. ExPASy Swiss-Prot
Match: Q6Z6T2 (Inactive protein FON2 SPARE1 OS=Oryza sativa subsp. japonica OX=39947 GN=FOS1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 30/72 (41.67%), Postives = 37/72 (51.39%), Query Frame = 0


Query: 53  TVSRRHREPQLHPCDALTHGNSRSLCIHLHRVRQRRFPVHVPPPLL-TRNEIDPRYGVEK 112
           T + RH     H      HG+      H HR   R     VPP       E+DPR+GV+K
Sbjct: 72  TTTDRHHHHHRH------HGH------HHHRGHDRWNRKGVPPTAAGPGEEVDPRFGVQK 131

Query: 113 RLVPSGPNPLHN 124
           RLVP+GPNPLH+
Sbjct: 132 RLVPTGPNPLHH 131

The following BLAST results are available for this feature:

BLAST of Lag0040160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574051.1	3.1e-38	73.08	CLAVATA3/ESR (CLE)-related protein 10, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_038891849.1	1.9e-35	70.45	CLAVATA3/ESR (CLE)-related protein 10-like [Benincasa hispida]	[more]
KAG7032247.1	4.7e-34	71.09	CLAVATA3/ESR (CLE)-related protein 10, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601466.1	1.4e-33	70.31	CLAVATA3/ESR (CLE)-related protein 10, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022148995.1	2.3e-33	72.32	CLAVATA3/ESR (CLE)-related protein 9-like [Momordica charantia]	[more]

BLAST of Lag0040160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZE4	4.4e-11	56.67	CLAVATA3/ESR (CLE)-related protein 9 OS=Arabidopsis thaliana OX=3702 GN=CLE9 PE=...	[more]
Q4PSX1	5.8e-11	41.07	CLAVATA3/ESR (CLE)-related protein 10 OS=Arabidopsis thaliana OX=3702 GN=CLE10 P...	[more]
Q6NMF0	1.6e-05	91.30	CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana OX=3702 GN=CLE13 P...	[more]
A2X462	3.6e-05	41.67	Protein FON2 SPARE1 OS=Oryza sativa subsp. indica OX=39946 GN=FOS1 PE=2 SV=1	[more]
Q6Z6T2	3.6e-05	41.67	Inactive protein FON2 SPARE1 OS=Oryza sativa subsp. japonica OX=39947 GN=FOS1 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..68
None	No IPR available	PANTHER	PTHR34359:SF5	CLAVATA3/ESR (CLE)-RELATED PROTEIN 10	coord: 4..123
IPR039618	CLAVATA3/ESR (CLE)-related protein 9/10/11/12/13	PANTHER	PTHR34359	CLAVATA3/ESR (CLE)-RELATED PROTEIN 10	coord: 4..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040160.1	Lag0040160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0016021	integral component of membrane