Lag0040019 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040019
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr13: 1609030 .. 1609486 (-)
RNA-Seq Expression	Lag0040019
Synteny	Lag0040019

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGGAGAATCGGTGTGTTGTGGTGTGTGGTGATTCGCAATCAGAGGGGTGAGCTGATGTTAGTTTTGCAAAAAGGATCGCCTACATTTACAAACTCGTTGTGTGTCGAGGCTTTGGCGGTTTTGGAGGGGATCAAGTTAGCAAGTCAGAATGATGTCCAAAGATTGACAATTTTGTCAGATTCTCTTGCATTGATATCAATTCTGATGCAGACGAAGCGGTGTGCGGTGGACTGTGCCATTGTTGTTTGGAATATTAAAAGTATGAGAGCTTTGTTCCATCAAATTAATTTTTTTTCATGTTAAGCGTGAATTTAATTTATTAGCTCATGAATTGGCCCGAACGGGTTTGTATTCGACACCACATGTGTGGTATTCCAATTTCCCAGATTGGATTGTAAGGCTAGCTCAATGTGAGCAACCATTCTTTGTATCTTCCAGGGGAGTTCTTTGA

mRNA sequence

ATGTGGAGGAGAATCGGTGTGTTGTGGTGTGTGGTGATTCGCAATCAGAGGGGTGAGCTGATGTTAGTTTTGCAAAAAGGATCGCCTACATTTACAAACTCGTTGTGTGTCGAGGCTTTGGCGGTTTTGGAGGGGATCAAGTTAGCAAGTCAGAATGATGTCCAAAGATTGACAATTTTGTCAGATTCTCTTGCATTGATATCAATTCTGATGCAGACGAAGCGGTGTGCGGTGGACTGTGCCATTGTTGTTTGGAATATTAAAAATTGGATTGTAAGGCTAGCTCAATGTGAGCAACCATTCTTTGTATCTTCCAGGGGAGTTCTTTGA

Coding sequence (CDS)

ATGTGGAGGAGAATCGGTGTGTTGTGGTGTGTGGTGATTCGCAATCAGAGGGGTGAGCTGATGTTAGTTTTGCAAAAAGGATCGCCTACATTTACAAACTCGTTGTGTGTCGAGGCTTTGGCGGTTTTGGAGGGGATCAAGTTAGCAAGTCAGAATGATGTCCAAAGATTGACAATTTTGTCAGATTCTCTTGCATTGATATCAATTCTGATGCAGACGAAGCGGTGTGCGGTGGACTGTGCCATTGTTGTTTGGAATATTAAAAATTGGATTGTAAGGCTAGCTCAATGTGAGCAACCATTCTTTGTATCTTCCAGGGGAGTTCTTTGA

Protein sequence

MWRRIGVLWCVVIRNQRGELMLVLQKGSPTFTNSLCVEALAVLEGIKLASQNDVQRLTILSDSLALISILMQTKRCAVDCAIVVWNIKNWIVRLAQCEQPFFVSSRGVL

Homology

The following BLAST results are available for this feature:

BLAST of Lag0040019 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0040019 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..104 e-value: 1.3E-6 score: 30.5
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 10..98 e-value: 7.0E-13 score: 48.5
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 9..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040019.1	Lag0040019.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity