Lag0039984 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039984
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUbiquitin
Locationchr13: 1325060 .. 1325530 (+)
RNA-Seq ExpressionLag0039984
SyntenyLag0039984
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGATCTTCGTGAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGAGTTCTGATACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTCCGTCTCAGGGGAGGCGCTAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGCGCTGGAACTTTCATGGCCAACCACTTTGATCGCCACTACTGTGGAAAGTGTGGCTTGACTTATGTTTACAACAAAGCTGGTGGTGATTAG

mRNA sequence

ATGCAGATCTTCGTGAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGAGTTCTGATACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTCCGTCTCAGGGGAGGCGCTAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGCGCTGGAACTTTCATGGCCAACCACTTTGATCGCCACTACTGTGGAAAGTGTGGCTTGACTTATGTTTACAACAAAGCTGGTGGTGATTAG

Coding sequence (CDS)

ATGCAGATCTTCGTGAAGACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGAGTTCTGATACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTCCGTCTCAGGGGAGGCGCTAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGCGCTGGAACTTTCATGGCCAACCACTTTGATCGCCACTACTGTGGAAAGTGTGGCTTGACTTATGTTTACAACAAAGCTGGTGGTGATTAG

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Homology
[Close]
BLAST of Lag0039984 vs. NCBI nr
Match: PHT59822.1 (Ubiquitin-40S ribosomal protein S27a [Capsicum baccatum])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 28  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 87

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 88  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 147

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 148 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 183

[Close]
BLAST of Lag0039984 vs. NCBI nr
Match: XP_016554632.1 (PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Capsicum annuum] >ABK42077.1 ubiquitin extension protein [Capsicum annuum])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 24  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 83

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 84  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 143

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 144 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 179

[Close]
BLAST of Lag0039984 vs. NCBI nr
Match: NP_001269170.1 (ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus] >XP_008446192.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Cucumis melo] >XP_022151041.1 ubiquitin-40S ribosomal protein S27a [Momordica charantia] >XP_022944801.1 ubiquitin-40S ribosomal protein S27a [Cucurbita moschata] >XP_022956912.1 ubiquitin-40S ribosomal protein S27a [Cucurbita moschata] >XP_022966908.1 ubiquitin-40S ribosomal protein S27a [Cucurbita maxima] >XP_022994820.1 ubiquitin-40S ribosomal protein S27a [Cucurbita maxima] >XP_023511766.1 ubiquitin-40S ribosomal protein S27a [Cucurbita pepo subsp. pepo] >XP_023542935.1 ubiquitin-40S ribosomal protein S27a [Cucurbita pepo subsp. pepo] >XP_038893211.1 ubiquitin-40S ribosomal protein S27a [Benincasa hispida] >XP_041999464.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >XP_042004337.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >XP_042063578.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >ADN33826.1 ubiquitin extension protein [Cucumis melo subsp. melo] >KAA0034303.1 ubiquitin-40S ribosomal protein S27a-like [Cucumis melo var. makuwa] >KAF3629003.1 Ubiquitin-40S ribosomal protein S27a [Capsicum annuum] >KAG6573732.1 Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sororia] >KAG8387388.1 hypothetical protein BUALT_Bualt02G0016100 [Buddleja alternifolia] >KAG9157188.1 hypothetical protein Leryth_004865 [Lithospermum erythrorhizon] >PHU30403.1 Ubiquitin-40S ribosomal protein S27a [Capsicum chinense] >CAA2994933.1 Ubiquitin-40S ribosomal S27a [Olea europaea subsp. europaea])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lag0039984 vs. NCBI nr
Match: XP_042057148.1 (ubiquitin-40S ribosomal protein S27a-like [Salvia splendens])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 49  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 108

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 109 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 168

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 169 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 204

[Close]
BLAST of Lag0039984 vs. NCBI nr
Match: KAG6601511.1 (Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 62  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 121

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 122 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 181

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 182 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 217

[Close]
BLAST of Lag0039984 vs. ExPASy Swiss-Prot
Match: P62980 (Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=1 SV=2)

HSP 1 Score: 308.1 bits (788), Expect = 5.5e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lag0039984 vs. ExPASy Swiss-Prot
Match: P62981 (Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 SV=2)

HSP 1 Score: 308.1 bits (788), Expect = 5.5e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lag0039984 vs. ExPASy Swiss-Prot
Match: P47905 (Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2)

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-80
Identity = 150/153 (98.04%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 154
           CPN ECGAGTFMANHFDRHYCGKCG TYVY KA
Sbjct: 121 CPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 153

[Close]
BLAST of Lag0039984 vs. ExPASy Swiss-Prot
Match: P59232 (Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27AB PE=2 SV=2)

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-79
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of Lag0039984 vs. ExPASy Swiss-Prot
Match: P59233 (Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27AC PE=2 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 1.7e-79
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

The following BLAST results are available for this feature:
BLAST of Lag0039984 vs. NCBI nr
Match NameE-valueIdentityDescription
PHT59822.11.7e-81100.00Ubiquitin-40S ribosomal protein S27a [Capsicum baccatum][more]
XP_016554632.11.7e-81100.00PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Capsicum annuum] >ABK42077... [more]
NP_001269170.11.7e-81100.00ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus] >XP_008446192.1 PRED... [more]
XP_042057148.11.7e-81100.00ubiquitin-40S ribosomal protein S27a-like [Salvia splendens][more]
KAG6601511.11.7e-81100.00Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sor... [more]
BLAST of Lag0039984 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P629805.5e-8398.72Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=... [more]
P629815.5e-8398.72Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 S... [more]
P479051.5e-8098.04Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2[more]
P592321.3e-7996.75Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27A... [more]
P592331.7e-7996.10Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27A... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 11..31
score: 85.2
coord: 53..74
score: 91.18
coord: 32..52
score: 95.05
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 1..72
e-value: 3.0E-35
score: 133.1
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 3..74
e-value: 6.0E-34
score: 115.6
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 1..76
score: 30.452106
IPR002906Ribosomal protein S27aSMARTSM01402Ribosomal_S27_2coord: 102..147
e-value: 3.1E-28
score: 109.8
IPR002906Ribosomal protein S27aPFAMPF01599Ribosomal_S27coord: 102..147
e-value: 1.7E-26
score: 91.9
IPR038582S27a-like superfamilyGENE3D6.20.50.150coord: 81..154
e-value: 2.1E-40
score: 138.9
NoneNo IPR availableGENE3D3.10.20.90coord: 1..80
e-value: 5.6E-46
score: 156.3
NoneNo IPR availablePANTHERPTHR10666:SF363UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1coord: 1..146
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..146
NoneNo IPR availableCDDcd01803Ubl_ubiquitincoord: 1..76
e-value: 2.15267E-55
score: 166.851
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 100..153
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039984.1Lag0039984.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019941 modification-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0031386 protein tag
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005515 protein binding