Lag0039835 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039835
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein FAM136A
Location	chr13: 312166 .. 313138 (-)
RNA-Seq Expression	Lag0039835
Synteny	Lag0039835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCACATAGCAGCAATGGAAGAGCAAGTGGTTTCTGAGAGAATGAGGCAAAAGCTTAACGAAGTGAACATGGCTGCGCAATCTCATCTTGGTCCTATTCAAGACCACGTCAATTTTACCCTTCAGGTTTGCCTCTCTCTCCATTCAAAAGTGTTTTCTTTCGAATCATGTCGTCGTATTTCATCTTTGAATACCGGATTCTGTTTGGTGCGTTTCTTCTCCATTGGAAATCGGTTGCTGTGAGAAGAAAGGAACTTATTTGATGATTCCTTCTCTTCGTGATCTTCATTTCCATCATTTGTGTTTTTTTTTAGTTGATGATTATTGATTGTTTTCATGATTCTCGATTGCAGCAAGCGTATTTCAAATGTGCCTACGAGTGCTTCGACAGGAGAAGAAGGCAGGAAGAGATTAGCAATTGCGTCGAGAATTGTAGTGTTCCAGTTATCAAAGCCCAGCAACATGTTGAGAACGAGATGGCTAAGTTTCAAGTACGTGTTATTATCCATCTTCTCGTACTTATTTTCTGTCTTTTTTCCTTCCATGTAAACTACCTGAAGAAAAATACAAAAAACAAACTAAAACAGACTATGATTTTCTTTCAAGACGATCTGCCGTTTCCTATAATCATTTGCATTTTGTAGAGAGCAGCAAAATATTTCAGCATTATCTAGGCATGAACTAATAATAAGAGTTTCAACACTACAGTCGATGTTTAACGTTTTAAATTTCTGGATACATTAGTGTGAGGATCATTGAAAGGTTCCATATTTTTGTGTGATGAATGCAGGAAAGATTGAACAGGTCACTAATGGTGTGCCAAGACAAGTTTGAAGCAGCTAGGCTTCAGCAGAAAACTGGCAGCATATCTGATTTGGAGTCGTGCGTGGATGCGTCAATACAAGAAAGCTTGAGTACGCTGCCACACCTAGCTGATAAATTAAAAGCTTCCTTCAATATCAGGAATTAA

mRNA sequence

ATGAATCACATAGCAGCAATGGAAGAGCAAGTGGTTTCTGAGAGAATGAGGCAAAAGCTTAACGAAGTGAACATGGCTGCGCAATCTCATCTTGGTCCTATTCAAGACCACGTCAATTTTACCCTTCAGCAAGCGTATTTCAAATGTGCCTACGAGTGCTTCGACAGGAGAAGAAGGCAGGAAGAGATTAGCAATTGCGTCGAGAATTGTAGTGTTCCAGTTATCAAAGCCCAGCAACATGTTGAGAACGAGATGGCTAAGTTTCAAGAAAGATTGAACAGGTCACTAATGGTGTGCCAAGACAAGTTTGAAGCAGCTAGGCTTCAGCAGAAAACTGGCAGCATATCTGATTTGGAGTCGTGCGTGGATGCGTCAATACAAGAAAGCTTGAGTACGCTGCCACACCTAGCTGATAAATTAAAAGCTTCCTTCAATATCAGGAATTAA

Coding sequence (CDS)

ATGAATCACATAGCAGCAATGGAAGAGCAAGTGGTTTCTGAGAGAATGAGGCAAAAGCTTAACGAAGTGAACATGGCTGCGCAATCTCATCTTGGTCCTATTCAAGACCACGTCAATTTTACCCTTCAGCAAGCGTATTTCAAATGTGCCTACGAGTGCTTCGACAGGAGAAGAAGGCAGGAAGAGATTAGCAATTGCGTCGAGAATTGTAGTGTTCCAGTTATCAAAGCCCAGCAACATGTTGAGAACGAGATGGCTAAGTTTCAAGAAAGATTGAACAGGTCACTAATGGTGTGCCAAGACAAGTTTGAAGCAGCTAGGCTTCAGCAGAAAACTGGCAGCATATCTGATTTGGAGTCGTGCGTGGATGCGTCAATACAAGAAAGCTTGAGTACGCTGCCACACCTAGCTGATAAATTAAAAGCTTCCTTCAATATCAGGAATTAA

Protein sequence

MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFTLQQAYFKCAYECFDRRRRQEEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSISDLESCVDASIQESLSTLPHLADKLKASFNIRN

Homology

[Close]

BLAST of Lag0039835 vs. NCBI nr
Match: XP_022151759.1 (protein FAM136A [Momordica charantia])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 141/148 (95.27%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFTLQQAYFKCAYECFDRRRRQ 60
           MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGP+QDHVNFTLQQAYFKCAYECFDRRRRQ
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPVQDHVNFTLQQAYFKCAYECFDRRRRQ 60

Query: 61  EEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSISDLES 120
           EEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGS+ DLES
Sbjct: 61  EEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 120

Query: 121 CVDASIQESLSTLPHLADKLKASFNIRN 149
           CVD SIQESL+TLPHLADKL+ASFNIR+
Sbjct: 121 CVDGSIQESLNTLPHLADKLRASFNIRD 148

[Close]

BLAST of Lag0039835 vs. NCBI nr
Match: XP_038893078.1 (protein FAM136A-like [Benincasa hispida])

HSP 1 Score: 282.3 bits (721), Expect = 2.3e-72
Identity = 141/148 (95.27%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFTLQQAYFKCAYECFDRRRRQ 60
           MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNF+LQQAYFKCAYECFDRRRRQ
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRRQ 60

Query: 61  EEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSISDLES 120
           EEISNCVENCSVPV+KAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGS+ DLES
Sbjct: 61  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 120

Query: 121 CVDASIQESLSTLPHLADKLKASFNIRN 149
           CVDASIQESL+TLPHLA+KLKASFNI N
Sbjct: 121 CVDASIQESLNTLPHLANKLKASFNISN 148

[Close]

BLAST of Lag0039835 vs. NCBI nr
Match: XP_004135332.1 (protein FAM136A [Cucumis sativus] >KGN51661.1 hypothetical protein Csa_009350 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 4.0e-72
Identity = 140/148 (94.59%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFTLQQAYFKCAYECFDRRRRQ 60
           MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNF+LQQAYFKCAYECFDRRRRQ
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRRQ 60

Query: 61  EEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSISDLES 120
           EEISNCVENCSVPV+KAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGS+ DLES
Sbjct: 61  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 120

Query: 121 CVDASIQESLSTLPHLADKLKASFNIRN 149
           CVDASIQES++TLPHLA+KLKASFNI N
Sbjct: 121 CVDASIQESMNTLPHLANKLKASFNITN 148

[Close]

BLAST of Lag0039835 vs. NCBI nr
Match: XP_008446025.1 (PREDICTED: protein FAM136A [Cucumis melo] >KAA0034184.1 protein FAM136A [Cucumis melo var. makuwa] >TYK15736.1 protein FAM136A [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 3.4e-71
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFTLQQAYFKCAYECFDRRRRQ 60
           MNHIAAMEEQVVSERMRQKLNEVN AAQSHLGPIQDHVNF+LQQAYFKCAYECFDRRRRQ
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNAAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRRQ 60

Query: 61  EEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSISDLES 120
           EEISNCVENCSVPV+KAQQHVENEM+KFQERLNRSLMVCQDKFEAARLQQKTGS+ DLES
Sbjct: 61  EEISNCVENCSVPVVKAQQHVENEMSKFQERLNRSLMVCQDKFEAARLQQKTGSVYDLES 120

Query: 121 CVDASIQESLSTLPHLADKLKASFNIRN 149
           CVDASIQESL+TLPHLA+KLKASFNI N
Sbjct: 121 CVDASIQESLNTLPHLANKLKASFNIGN 148

[Close]

BLAST of Lag0039835 vs. NCBI nr
Match: XP_022945251.1 (protein FAM136A-like [Cucurbita moschata] >XP_022966815.1 protein FAM136A-like [Cucurbita maxima] >XP_023541572.1 protein FAM136A-like [Cucurbita pepo subsp. pepo] >KAG6573597.1 Family With Sequence Similarity 136 Member A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012719.1 hypothetical protein SDJN02_25472, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.6 bits (701), Expect = 4.9e-70
Identity = 136/148 (91.89%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFTLQQAYFKCAYECFDRRRRQ 60
           MNHIAAMEEQVVSERMRQKLNEVNMAAQ+ LGPIQDHVNFTLQQAYFKCAYECFDRRR+Q
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQAQLGPIQDHVNFTLQQAYFKCAYECFDRRRKQ 60

Query: 61  EEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTGSISDLES 120
           EEISNCVENCSVPV+KAQQHVENEMAKFQERLNRSLMVCQDKFEAA+LQQKT S+ +LES
Sbjct: 61  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAAKLQQKTNSVYELES 120

Query: 121 CVDASIQESLSTLPHLADKLKASFNIRN 149
           CVD+SIQESL+TLPHLA+KLKASFNIRN
Sbjct: 121 CVDSSIQESLNTLPHLANKLKASFNIRN 148

[Close]

BLAST of Lag0039835 vs. ExPASy Swiss-Prot
Match: Q6PBU0 (Protein FAM136A OS=Danio rerio OX=7955 GN=fam136a PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 36/116 (31.03%), Postives = 62/116 (53.45%), Query Frame = 0


Query: 35  QDHVNFTLQQAYFKCAYECFDR-RRRQEEISNCVENCSVPVIKAQQHVENEMAKFQERLN 94
           ++H+   +Q   F+C+ EC +       ++  C+E C  P+ KAQ  V +E+ +FQ+RL+
Sbjct: 22  KEHIR-KMQGRMFRCSAECCEHPGNSMNQVHQCIERCHTPLAKAQGLVTSELEQFQDRLS 81

Query: 95  RSLMVCQDK----FEAARLQQKTGSISDLESCVDASIQESLSTLPHLADKLKASFN 146
           R  M C DK    F++   +    ++ D   CV + + E L+ LP +  +LK S N
Sbjct: 82  RCTMHCSDKAKDLFDSGAKEPAVRALMD--GCVGSCVDEHLNLLPSMTRRLKDSLN 134

[Close]

BLAST of Lag0039835 vs. ExPASy Swiss-Prot
Match: A4QNC6 (Protein FAM136A OS=Xenopus tropicalis OX=8364 GN=fam136a PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-08
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 42  LQQAYFKCAYECF-DRRRRQEEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQ 101
           +Q   F+C+ +C  D     +++ +C+E C  P+ +AQ  V NE+ +FQ RL R  M C 
Sbjct: 28  MQGKMFRCSAQCCEDNGASMQQVHHCIERCHTPLAQAQSLVTNELERFQNRLARCTMHCN 87

Query: 102 DK----FEAARLQQKTGSISDLESCVDASIQESLSTLPHLADKLK 142
           DK    F++   + +    + LE CV    +E ++ +P +  KLK
Sbjct: 88  DKAKDSFDSGSKEAQVK--AQLEGCVIKCAEEHMNLIPSMTKKLK 130

[Close]

BLAST of Lag0039835 vs. ExPASy Swiss-Prot
Match: Q96C01 (Protein FAM136A OS=Homo sapiens OX=9606 GN=FAM136A PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.2e-08
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 42  LQQAYFKCAYECF-DRRRRQEEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQ 101
           +Q   F+C+  C  D +   +++  C+E C VP+ +AQ  V +E+ KFQ+RL R  M C 
Sbjct: 28  MQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCN 87

Query: 102 DKFE------AARLQQKTGSISDLESCVDASIQESLSTLPHLADKLK 142
           DK +      +  LQ K      L+SCV   + + +  +P +  K+K
Sbjct: 88  DKAKDSIDAGSKELQVK----QQLDSCVTKCVDDHMHLIPTMTKKMK 130

[Close]

BLAST of Lag0039835 vs. ExPASy Swiss-Prot
Match: B0BN94 (Protein FAM136A OS=Rattus norvegicus OX=10116 GN=Fam136a PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-07
Identity = 33/111 (29.73%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 42  LQQAYFKCAYECF-DRRRRQEEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQ 101
           +Q   F+C+  C  D +   +++  C+E C  P+ +AQ  V +E+ +FQ+RL R  M C 
Sbjct: 28  MQGLMFRCSANCCEDNQASMQQVHQCIERCHAPLAQAQALVTSELERFQDRLARCTMHCN 87

Query: 102 DKFE------AARLQQKTGSISDLESCVDASIQESLSTLPHLADKLKASFN 146
           DK +      +  LQ K      L+SCV   + + +  +P +  K+K S +
Sbjct: 88  DKAKDSMDAGSKELQVK----RQLDSCVAKCVDDHMHLIPTMTKKIKESLS 134

[Close]

BLAST of Lag0039835 vs. ExPASy Swiss-Prot
Match: Q2HJI3 (Protein FAM136A OS=Bos taurus OX=9913 GN=FAM136A PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 33/110 (30.00%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 42  LQQAYFKCAYECFDR-RRRQEEISNCVENCSVPVIKAQQHVENEMAKFQERLNRSLMVCQ 101
           +Q   F+C+  C +  +   +++  C+E C  P+ +AQ  V +E+ KFQ+RL R  M C 
Sbjct: 28  MQGLMFRCSAACCEESQASMQQVHQCIERCHAPLAQAQALVTSELEKFQDRLARCTMYCN 87

Query: 102 DKFEAARLQQKTGSIS-----DLESCVDASIQESLSTLPHLADKLKASFN 146
           DK   A+     GS        LE+CV   + + ++ +P +  K+K S +
Sbjct: 88  DK---AKDSIDAGSKELHVKRQLETCVTKCVDDHMNLIPTMTRKMKESLS 134

The following BLAST results are available for this feature:

BLAST of Lag0039835 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151759.1	1.1e-72	95.27	protein FAM136A [Momordica charantia]	[more]
XP_038893078.1	2.3e-72	95.27	protein FAM136A-like [Benincasa hispida]	[more]
XP_004135332.1	4.0e-72	94.59	protein FAM136A [Cucumis sativus] >KGN51661.1 hypothetical protein Csa_009350 [C...	[more]
XP_008446025.1	3.4e-71	93.92	PREDICTED: protein FAM136A [Cucumis melo] >KAA0034184.1 protein FAM136A [Cucumis...	[more]
XP_022945251.1	4.9e-70	91.89	protein FAM136A-like [Cucurbita moschata] >XP_022966815.1 protein FAM136A-like [...	[more]

BLAST of Lag0039835 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBU0	2.9e-09	31.03	Protein FAM136A OS=Danio rerio OX=7955 GN=fam136a PE=2 SV=1	[more]
A4QNC6	3.2e-08	31.43	Protein FAM136A OS=Xenopus tropicalis OX=8364 GN=fam136a PE=2 SV=1	[more]
Q96C01	7.2e-08	31.78	Protein FAM136A OS=Homo sapiens OX=9606 GN=FAM136A PE=1 SV=1	[more]
B0BN94	1.6e-07	29.73	Protein FAM136A OS=Rattus norvegicus OX=10116 GN=Fam136a PE=1 SV=1	[more]
Q2HJI3	2.1e-07	30.00	Protein FAM136A OS=Bos taurus OX=9913 GN=FAM136A PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008560	Protein of unknown function DUF842, eukaryotic	PFAM	PF05811	DUF842	coord: 20..142 e-value: 1.8E-38 score: 131.2
IPR008560	Protein of unknown function DUF842, eukaryotic	PANTHER	PTHR21096	UNCHARACTERIZED	coord: 1..146
None	No IPR available	PANTHER	PTHR21096:SF5	SUBFAMILY NOT NAMED	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039835.1	Lag0039835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm