Lag0039738 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039738
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr2: 49126837 .. 49127391 (+)
RNA-Seq Expression	Lag0039738
Synteny	Lag0039738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATATTCTGCTGGAATGTCCGGGGCTTGGGGAACCCCCGGACATTTCGAGAGCTTCGACATGAGGTCCGAAGCGAGAATCCTCAGATTGTCTTCTTGTCGGAGACTAAGTGCGGTCAGGATAAGATTGAGAGAGTGAAGGTGGCTTTGAACTTTGATAATGGCTTTAGTGTCCCAAGTATTGGCAGAGGTGGGGGCCTGACTATCTTGTGGAATGAGGATCTCCACCTTTCTATTAGTTCTTTTTCGTCGGGGCAAATTGATGTGGTGATTAAAAATTCGGACTATTGGTGGAGATTTACAGGTTTTTACGGGAATCCAGTGCCTCACAAGCGGAAAGAGTCGTGGGAGTTGTTAGGGAAGCTGAAGAGTAACTCGTCCCTCCCATGGATTGTGGGAGGAGACTTTAATGAAATCCTCTTGGCTATCGAGAAAGTTGGTGGTGTAGAGAGAAACTATCTGCTTATGGAATCTTTTAGAGCAGCGGTGGACAACTGCGGTTTGTTTGATTTGGGCTCCCCCCTGATCCCTTTACATGGGCCAAAAATGTGA

mRNA sequence

ATGAAAATATTCTGCTGGAATGTCCGGGGCTTGGGGAACCCCCGGACATTTCGAGAGCTTCGACATGAGGTCCGAAGCGAGAATCCTCAGATTGTCTTCTTGTCGGAGACTAAGTGCGGTCAGGATAAGATTGAGAGAGTGAAGGTGGCTTTGAACTTTGATAATGGCTTTAGTGTCCCAAGTATTGGCAGAGGTGGGGGCCTGACTATCTTGTGGAATGAGGATCTCCACCTTTCTATTAGTTCTTTTTCGTCGGGGCAAATTGATGTGGTGATTAAAAATTCGGACTATTGGTGGAGATTTACAGGTTTTTACGGGAATCCAGTGCCTCACAAGCGGAAAGAGTCGTGGGAGTTGTTAGGGAAGCTGAAGAGTAACTCGTCCCTCCCATGGATTGTGGGAGGAGACTTTAATGAAATCCTCTTGGCTATCGAGAAAGTTGGTGGTGTAGAGAGAAACTATCTGCTTATGGAATCTTTTAGAGCAGCGGTGGACAACTGCGGTTTGTTTGATTTGGGCTCCCCCCTGATCCCTTTACATGGGCCAAAAATGTGA

Coding sequence (CDS)

ATGAAAATATTCTGCTGGAATGTCCGGGGCTTGGGGAACCCCCGGACATTTCGAGAGCTTCGACATGAGGTCCGAAGCGAGAATCCTCAGATTGTCTTCTTGTCGGAGACTAAGTGCGGTCAGGATAAGATTGAGAGAGTGAAGGTGGCTTTGAACTTTGATAATGGCTTTAGTGTCCCAAGTATTGGCAGAGGTGGGGGCCTGACTATCTTGTGGAATGAGGATCTCCACCTTTCTATTAGTTCTTTTTCGTCGGGGCAAATTGATGTGGTGATTAAAAATTCGGACTATTGGTGGAGATTTACAGGTTTTTACGGGAATCCAGTGCCTCACAAGCGGAAAGAGTCGTGGGAGTTGTTAGGGAAGCTGAAGAGTAACTCGTCCCTCCCATGGATTGTGGGAGGAGACTTTAATGAAATCCTCTTGGCTATCGAGAAAGTTGGTGGTGTAGAGAGAAACTATCTGCTTATGGAATCTTTTAGAGCAGCGGTGGACAACTGCGGTTTGTTTGATTTGGGCTCCCCCCTGATCCCTTTACATGGGCCAAAAATGTGA

Protein sequence

MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSDYWWRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLGSPLIPLHGPKM

Homology

[Close]

BLAST of Lag0039738 vs. NCBI nr
Match: XP_042942727.1 (uncharacterized protein LOC122276878 [Carya illinoinensis])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-44
Identity = 86/175 (49.14%), Postives = 120/175 (68.57%), Query Frame = 0


Query: 1   MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVP 60
           MK+  WN RGLGNPRT REL   V+ ++PQ+VFLSETKC ++++E V+  L F N F V 
Sbjct: 1   MKLLSWNCRGLGNPRTVRELHQLVKEKSPQVVFLSETKCNRERVEMVRNRLGFVNSFVVN 60

Query: 61  SIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSDYW--WRFTGFYGNPVPHKRKESWE 120
           S+GR GGL ++WNE+L+ S+ S+S   I ++IK+ +    W  TGFYG+P   +RK  W+
Sbjct: 61  SLGRSGGLAMIWNENLNASLFSYSRHHISLMIKSEEEGREWHLTGFYGDPALERRKNCWD 120

Query: 121 LLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG 174
           +L  L+ + + PW+  GDFNE++   EK+GG ER +  MESFR A+D C L DLG
Sbjct: 121 ILCLLRPDRTCPWLCMGDFNELVSNEEKMGGAERPFFQMESFREALDECELGDLG 175

[Close]

BLAST of Lag0039738 vs. NCBI nr
Match: XP_030967653.1 (uncharacterized protein LOC115988147 [Quercus lobata])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-42
Identity = 89/175 (50.86%), Postives = 109/175 (62.29%), Query Frame = 0


Query: 1   MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVP 60
           M   CWN +G+GNPRT   LR  +R  NP++VFLSETK    ++E+VK  L F NG  VP
Sbjct: 1   MNYLCWNCQGIGNPRTVFALRDYLRRWNPKLVFLSETKLISRRMEKVKYKLGFSNGLIVP 60

Query: 61  SIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSD--YWWRFTGFYGNPVPHKRKESWE 120
           S GR GGL +LW+ D  L I S+S   ID VI  S   + WRFTGFYG+P  H R++SW+
Sbjct: 61  SRGRRGGLALLWSSDTVLEIKSYSDYHIDAVITESSNGFLWRFTGFYGHPETHLREDSWK 120

Query: 121 LLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG 174
           LL  L S  + PW   GDFNEIL   EK GG  R+   M+ FR  V+ CG  DLG
Sbjct: 121 LLSFLNSQFNFPWFCCGDFNEILSMTEKAGGALRSQCQMDKFRQVVNFCGFKDLG 175

[Close]

BLAST of Lag0039738 vs. NCBI nr
Match: XP_030922943.1 (uncharacterized protein LOC115949807 [Quercus lobata])

HSP 1 Score: 183.3 bits (464), Expect = 1.8e-42
Identity = 89/175 (50.86%), Postives = 111/175 (63.43%), Query Frame = 0


Query: 1   MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVP 60
           M   CWN +G+GNPRT   LR  +R  NP+IVFLSETK    ++E+VK  L+F NG  VP
Sbjct: 1   MNSLCWNCQGIGNPRTVFALRDYMRRWNPRIVFLSETKSKNRRMEKVKFNLDFTNGLYVP 60

Query: 61  SIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSD--YWWRFTGFYGNPVPHKRKESWE 120
           S GR GGL +LW+ D +L I S+S+  ID +I  +D    WRFT FYG    H R+ESW+
Sbjct: 61  SRGRSGGLALLWSSDTNLEIKSYSNHHIDAIITEADNGLSWRFTSFYGYLETHLREESWK 120

Query: 121 LLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG 174
           LL  L S  +LPW   GDFNEIL   EK GG +R+   M+ FR  V+ CG  DLG
Sbjct: 121 LLLHLNSQFNLPWFCFGDFNEILSMTEKAGGAQRSQSQMDGFRRMVNQCGFKDLG 175

[Close]

BLAST of Lag0039738 vs. NCBI nr
Match: XP_030929385.1 (uncharacterized protein LOC115955407 [Quercus lobata])

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-42
Identity = 83/174 (47.70%), Postives = 113/174 (64.94%), Query Frame = 0


Query: 1   MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVP 60
           M+   WN RGLGNPR+ R LR+ V+  +P  VFLSETK     +ER K+++ F NG  +P
Sbjct: 1   MRALGWNYRGLGNPRSVRVLRNIVQQWDPDFVFLSETKLRMQSMERKKMSIGFTNGLVIP 60

Query: 61  SIGRGGGLTILWNEDLHLSISSFSSGQID-VVIKNSDYWWRFTGFYGNPVPHKRKESWEL 120
           S GR GGL +LW +++++ + SFS   ID +V ++  + WR TGFYGNP  H+RKESWEL
Sbjct: 61  SHGRSGGLALLWRKEINVDVQSFSDRHIDAIVTEDRGFKWRITGFYGNPKVHRRKESWEL 120

Query: 121 LGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG 174
           L  L     LPW+  G+FNEI+   EK+GG  R+   M+ FR A++ C   DLG
Sbjct: 121 LKVLSRKFQLPWLCFGEFNEIVSTSEKMGGARRSQRQMDDFREAINYCRFMDLG 174

[Close]

BLAST of Lag0039738 vs. NCBI nr
Match: XP_030970961.1 (uncharacterized protein LOC115991405 [Quercus lobata])

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-42
Identity = 84/174 (48.28%), Postives = 113/174 (64.94%), Query Frame = 0


Query: 1   MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVP 60
           M+   WN RGLGNP++ R LR+ V+  +P  VFLSETK     +ER K+++ F NG  +P
Sbjct: 1   MRALGWNCRGLGNPQSVRVLRNIVQQWDPDFVFLSETKLRVRSMERKKMSIGFTNGLVIP 60

Query: 61  SIGRGGGLTILWNEDLHLSISSFSSGQID-VVIKNSDYWWRFTGFYGNPVPHKRKESWEL 120
           S GR GGL +LW +++++ + SFS   ID +V ++  + WR TGFYGNP  H+RKESWEL
Sbjct: 61  SHGRSGGLALLWRKEINVDVQSFSDRHIDAIVTEDRGFKWRITGFYGNPEVHRRKESWEL 120

Query: 121 LGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG 174
           L  L     LPW+  GDFNEI+   EK+GG  R+   M+ FR A+D C   DLG
Sbjct: 121 LKVLSRKFQLPWLCFGDFNEIVSTSEKMGGARRSQRQMDDFREAIDCCRFMDLG 174

The following BLAST results are available for this feature:

BLAST of Lag0039738 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042942727.1	1.2e-44	49.14	uncharacterized protein LOC122276878 [Carya illinoinensis]	[more]
XP_030967653.1	1.4e-42	50.86	uncharacterized protein LOC115988147 [Quercus lobata]	[more]
XP_030922943.1	1.8e-42	50.86	uncharacterized protein LOC115949807 [Quercus lobata]	[more]
XP_030929385.1	2.4e-42	47.70	uncharacterized protein LOC115955407 [Quercus lobata]	[more]
XP_030970961.1	2.4e-42	48.28	uncharacterized protein LOC115991405 [Quercus lobata]	[more]

BLAST of Lag0039738 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..180 e-value: 2.5E-25 score: 91.6
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 1..175
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF03372	Exo_endo_phos	coord: 6..139 e-value: 2.0E-8 score: 34.1
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 1..145
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039738.1	Lag0039738.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003824	catalytic activity