Lag0039574 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039574
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr2: 46762168 .. 46762777 (-)
RNA-Seq ExpressionLag0039574
SyntenyLag0039574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCAAAGGTTGAAAAGAAGATCCATCAGCTCTTTCAAAGAATTAGCCAGAGCATTCCTCTCGCAGTTCATGTGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTTATTGTCAAACAACAACCAGGTGAGAGTTTGCGTGATTATATAACACGTTTTAATGAGAAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAACCCTAATAGCCATAACAGCAGGAATGGAGCATGAGAGATTACTAAATTCAGTAGGTAAAAGCCAACATTGCACTTATGCTGAGTTTGTCTCCAGAACACAAAAGTACATGAGTGTAGAGGAATTGCTTAGATCGAAGAAGTCAGGACACAAGAGGTATTCTTCATTCGACCGAGACCAGAAGAAGGACAAAAGACAGCAGACAGACGAGGTTGGCCGATGCCGAGTCGACCATAACAGTGGTCGAGGCCGACCAGACCGAGGAGACTACCTAAGGAAGTTTGAAAAGTACACTCCTACCTCAATCCCACAAGAGCAAATCTTGATGGAAATTCAGAATACGAACATCCTTAACATACGTAGAAAGCTAAAGTCAAATCCTAACAAAAGAGACAAAGGCTAG

mRNA sequence

ATGGTTTCAAAGGTTGAAAAGAAGATCCATCAGCTCTTTCAAAGAATTAGCCAGAGCATTCCTCTCGCAGTTCATGTTGAGGGATACAGTGAGGGAGCAACCCTAATAGCCATAACAGCAGGAATGGAGCATGAGAGATTACTAAATTCAGTAGGTAAAAGCCAACATTGCACTTATGCTGAGTTTGTCTCCAGAACACAAAAGTACATGAGTGTAGAGGAATTGCTTAGATCGAAGAAGTCAGGACACAAGAGGTATTCTTCATTCGACCGAGACCAGAAGAAGGACAAAAGACAGCAGACAGACGAGGTTGGCCGATGCCGAGTCGACCATAACAGTGGTCGAGGCCGACCAGACCGAGGAGACTACCTAAGGAAGTTTGAAAAGTACACTCCTACCTCAATCCCACAAGAGCAAATCTTGATGGAAATTCAGAATACGAACATCCTTAACATACGTAGAAAGCTAAAGTCAAATCCTAACAAAAGAGACAAAGGCTAG

Coding sequence (CDS)

ATGGTTTCAAAGGTTGAAAAGAAGATCCATCAGCTCTTTCAAAGAATTAGCCAGAGCATTCCTCTCGCAGTTCATGTTGAGGGATACAGTGAGGGAGCAACCCTAATAGCCATAACAGCAGGAATGGAGCATGAGAGATTACTAAATTCAGTAGGTAAAAGCCAACATTGCACTTATGCTGAGTTTGTCTCCAGAACACAAAAGTACATGAGTGTAGAGGAATTGCTTAGATCGAAGAAGTCAGGACACAAGAGGTATTCTTCATTCGACCGAGACCAGAAGAAGGACAAAAGACAGCAGACAGACGAGGTTGGCCGATGCCGAGTCGACCATAACAGTGGTCGAGGCCGACCAGACCGAGGAGACTACCTAAGGAAGTTTGAAAAGTACACTCCTACCTCAATCCCACAAGAGCAAATCTTGATGGAAATTCAGAATACGAACATCCTTAACATACGTAGAAAGCTAAAGTCAAATCCTAACAAAAGAGACAAAGGCTAG

Protein sequence

MVSKVEKKIHQLFQRISQSIPLAVHVEGYSEGATLIAITAGMEHERLLNSVGKSQHCTYAEFVSRTQKYMSVEELLRSKKSGHKRYSSFDRDQKKDKRQQTDEVGRCRVDHNSGRGRPDRGDYLRKFEKYTPTSIPQEQILMEIQNTNILNIRRKLKSNPNKRDKG
Homology
BLAST of Lag0039574 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-11
Identity = 49/123 (39.84%), Postives = 74/123 (60.16%), Query Frame = 0

Query: 24  VHVEGYSEGATLIAITAGMEHERLLNSVGKSQHCTYAEFVSRTQKYMSVEELLRSKKSGH 83
           + VEG ++   L+   +G++ E+L+ S GK    T++E  SR Q YMSV EL+ SK+   
Sbjct: 118 LQVEGLTDAVVLLVFISGVKDEQLVFSFGKRTSGTFSEARSRAQTYMSVGELIHSKRDPK 177

Query: 84  KRYSSFDRDQKKDKRQQTDEVGRCRVDHNSGRGRPDRGDYLRKFEKYTPTSIPQEQILME 143
            +Y+ ++    K KR      G      +SG+GR  + D  RKFEKYTPT++P EQ+LME
Sbjct: 178 GKYADYN---TKRKRPGEKRHGLRWERSDSGQGRLVQRDPQRKFEKYTPTTVPLEQVLME 237

Query: 144 IQN 147
           I++
Sbjct: 238 IKH 237

BLAST of Lag0039574 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 9.8e-11
Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 0

Query: 24  VHVEGYSEGATLIAITAGMEHERLLNSVGKSQHCTYAEFVSRTQKYMSVEELLRSKKSGH 83
           + VEG ++  +L+A  +G+  E L  S GK    T++E +SR Q+YMS  E   SK+   
Sbjct: 302 LQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPD 361

Query: 84  KRYSSFDRDQKKDKRQQTDEVGRCRVDHNSGRGRPDRGDYLRKFEKYTPTSIPQEQILME 143
            + +   R++  DK Q +             R R  + D  RKFEKYTPT++P EQ+LME
Sbjct: 362 GKRTDPKRERSGDKPQGS---------RWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLME 421

Query: 144 IQNTNILNIRRKLKSNPNKRDKG 167
           I++  +L    ++K++  KR KG
Sbjct: 422 IKDQRLLKWPERMKASSAKRSKG 435

BLAST of Lag0039574 vs. NCBI nr
Match: XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 51/163 (31.29%), Postives = 84/163 (51.53%), Query Frame = 0

Query: 4   KVEKKIHQLFQRISQSIPLAVHVEGYSEGATLIAITAGMEHERLLNSVGKSQHCTYAEFV 63
           +  + +H    R ++     + VEG ++  +L+A   G+  E L  S GK    T++E +
Sbjct: 110 RTTESLHDYVTRFNKE---KLQVEGLTDAVSLLAFIFGVRDEHLSFSFGKRTPSTFSEAL 169

Query: 64  SRTQKYMSVEELLRSKKSGHKRYSSFDRDQKKDKRQQTDEVGRCRVDHNSGRGRPDRGDY 123
           SR Q+YMS  E   SK+  + + +   R++  DK Q +             R R  + D 
Sbjct: 170 SRAQRYMSAGEFFYSKRESNGKRTDQKRERSGDKPQGS---------RWEKRDRSCQKDP 229

Query: 124 LRKFEKYTPTSIPQEQILMEIQNTNILNIRRKLKSNPNKRDKG 167
            +KFEKYT T++P EQ+LMEI+N  +L    ++ ++  KR KG
Sbjct: 230 PQKFEKYTSTTVPLEQVLMEIKNQRLLKWPERMNASSTKRSKG 260

BLAST of Lag0039574 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 51/163 (31.29%), Postives = 83/163 (50.92%), Query Frame = 0

Query: 4   KVEKKIHQLFQRISQSIPLAVHVEGYSEGATLIAITAGMEHERLLNSVGKSQHCTYAEFV 63
           +  + +H    R ++     + +E  ++  +L+A  +G+  E L  S GK    T++E +
Sbjct: 69  RTTESLHDYVARFNKE---KLQIESLTDVVSLLAFMSGVRDEHLSFSFGKKTPSTFSETL 128

Query: 64  SRTQKYMSVEELLRSKKSGHKRYSSFDRDQKKDKRQQTDEVGRCRVDHNSGRGRPDRGDY 123
           SR Q+YMS  E   SK+    + +   R++  DK Q +             R R  + D 
Sbjct: 129 SRAQRYMSAGEFFYSKREPDGKRTDQKRERSGDKPQGS---------RWEKRDRSSQKDP 188

Query: 124 LRKFEKYTPTSIPQEQILMEIQNTNILNIRRKLKSNPNKRDKG 167
            RKFEKYTPT++P EQ+LMEI++  +L    ++K    KR KG
Sbjct: 189 PRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKG 219

BLAST of Lag0039574 vs. NCBI nr
Match: XP_022159192.1 (uncharacterized protein LOC111025612 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 0

Query: 40  AGMEHERLLNSVGKSQHCTYAEFVSRTQKYMSVEELLRSKKSGHKRYSSFDRDQKKDKRQ 99
           +G++ E L  S GK    T+AE +SR QKYMS EE    KK    + +   R++  +K  
Sbjct: 2   SGIKDEHLSFSFGKKTPSTFAEALSRAQKYMSAEEFFHLKKELEGKRADQKRERSGEKPL 61

Query: 100 QTDEVGRCRVDHNSGRGRPDRGDYLRKFEKYTPTSIPQEQILMEIQNTNILNIRRKLKSN 159
            +    + RV          + D  RKFEKYTPT++P EQ+LMEI++  +L     +K+ 
Sbjct: 62  SSKWEKQDRV--------VGQKDLPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPETMKAP 120

Query: 160 PNKRDKG 167
           PNKR KG
Sbjct: 122 PNKRSKG 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022147761.14.4e-1139.84uncharacterized protein LOC111016619 [Momordica charantia][more]
XP_022158830.19.8e-1135.66uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022142767.11.1e-0931.29uncharacterized protein LOC111012805 [Momordica charantia][more]
XP_022159368.11.4e-0931.29uncharacterized protein LOC111025785 [Momordica charantia][more]
XP_022159192.11.9e-0938.58uncharacterized protein LOC111025612 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039574.1Lag0039574.1mRNA