Lag0039399 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039399
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAbhydrolase_3 domain-containing protein
Locationchr2: 43003405 .. 43003749 (-)
RNA-Seq ExpressionLag0039399
SyntenyLag0039399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCAGTTCTTGTTCCGAAATCTCAACCTCTGAACTTCCATGGAAGCACAGACTAACTTTTCGATTCGCCGATCTAATTTTCAAAGCTTCTCTCCGATCAGATCTCACCGTCAATCGTTGGATTTTCAGTATCCTCGACCCCAAAATCCCTCCCAATCCCAACCCAGTCGACGCCGTTTCCTCTTCCGATTTCACCGTCGACACTTCCCGAGACCTCTTCCTTCGAATCTTCACCCCTACCGACTGCGCCGGTGATTCTCTCCCGCCGCCGGTTACGCCGACGCAACTTCACATGACAAGGCTGCTCGCCGTTACGCCAAAGAACTACGCGCCGTCGTAA

mRNA sequence

ATGTCGTCCAGTTCTTGTTCCGAAATCTCAACCTCTGAACTTCCATGGAAGCACAGACTAACTTTTCGATTCGCCGATCTAATTTTCAAAGCTTCTCTCCGATCAGATCTCACCGTCAATCGTTGGATTTTCAGTATCCTCGACCCCAAAATCCCTCCCAATCCCAACCCAGTCGACGCCGTTTCCTCTTCCGATTTCACCGTCGACACTTCCCGAGACCTCTTCCTTCGAATCTTCACCCCTACCGACTGCGCCGGTGATTCTCTCCCGCCGCCGGTTACGCCGACGCAACTTCACATGACAAGGCTGCTCGCCGTTACGCCAAAGAACTACGCGCCGTCGTAA

Coding sequence (CDS)

ATGTCGTCCAGTTCTTGTTCCGAAATCTCAACCTCTGAACTTCCATGGAAGCACAGACTAACTTTTCGATTCGCCGATCTAATTTTCAAAGCTTCTCTCCGATCAGATCTCACCGTCAATCGTTGGATTTTCAGTATCCTCGACCCCAAAATCCCTCCCAATCCCAACCCAGTCGACGCCGTTTCCTCTTCCGATTTCACCGTCGACACTTCCCGAGACCTCTTCCTTCGAATCTTCACCCCTACCGACTGCGCCGGTGATTCTCTCCCGCCGCCGGTTACGCCGACGCAACTTCACATGACAAGGCTGCTCGCCGTTACGCCAAAGAACTACGCGCCGTCGTAA

Protein sequence

MSSSSCSEISTSELPWKHRLTFRFADLIFKASLRSDLTVNRWIFSILDPKIPPNPNPVDAVSSSDFTVDTSRDLFLRIFTPTDCAGDSLPPPVTPTQLHMTRLLAVTPKNYAPS
Homology
BLAST of Lag0039399 vs. NCBI nr
Match: XP_022973499.1 (probable carboxylesterase 18 [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-28
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 0

Query: 4  SSCSEISTSELPWKHRLTFRFADLIFKASLRSDLTVNRWIFSILDPKIPPNPNPVDAVSS 63
          S  SEISTS+LPWKHRLT RFA L+F AS+RSDLTVNR + + LDPKIPPNPN + AVSS
Sbjct: 5  SVSSEISTSQLPWKHRLTLRFAALLFNASIRSDLTVNRRLLNFLDPKIPPNPNSIHAVSS 64

Query: 64 SDFTVDTSRDLFLRIFTPTDCAGDSLPPPV 94
          SD T+D SRDLFLRIFTPT  A DSL PPV
Sbjct: 65 SDLTIDASRDLFLRIFTPTVAATDSLLPPV 94

BLAST of Lag0039399 vs. NCBI nr
Match: XP_022925491.1 (probable carboxylesterase 18 [Cucurbita moschata])

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-28
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 0

Query: 3  SSSCSEISTSELPWKHRLTFRFADLIFKASLRSDLTVNRWIFSILDPKIPPNPNPVDAVS 62
          SS  SEISTS+LPWKHRLT RFA L+F AS+RSDLTVNR + + LDPKIPPNPN + AVS
Sbjct: 4  SSVSSEISTSQLPWKHRLTLRFAALLFNASIRSDLTVNRRLLNFLDPKIPPNPNSIHAVS 63

Query: 63 SSDFTVDTSRDLFLRIFTPTDCAGDSLPPPV 94
          SSD T+D SRDLFLRIFTPT  A DS+ PPV
Sbjct: 64 SSDLTIDDSRDLFLRIFTPTVAATDSVLPPV 94

BLAST of Lag0039399 vs. NCBI nr
Match: KAG6592331.1 (putative carboxylesterase 18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025153.1 putative carboxylesterase 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.0 bits (336), Expect = 7.9e-28
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 0

Query: 4  SSCSEISTSELPWKHRLTFRFADLIFKASLRSDLTVNRWIFSILDPKIPPNPNPVDAVSS 63
          S  SEISTS+LPWKHRLT RFA L+F AS+RSDLTVNR + + LDPKIPPNPN + AVSS
Sbjct: 5  SVSSEISTSQLPWKHRLTLRFAALLFNASIRSDLTVNRRLLNFLDPKIPPNPNSIHAVSS 64

Query: 64 SDFTVDTSRDLFLRIFTPTDCAGDSLPPPV 94
          SD T+D SRDLFLRIFTPT  A DS+ PPV
Sbjct: 65 SDLTIDDSRDLFLRIFTPTVAATDSVLPPV 94

BLAST of Lag0039399 vs. NCBI nr
Match: XP_023536262.1 (probable carboxylesterase 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 5.1e-27
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 4   SSCSEISTSELPWKHRLTFRFADLIFKASLRSDLTVNRWIFSILDPKIPPNPNPVDAVSS 63
           S  SEISTS+LPWKHRLT RFA L+F AS+RSDLTVNR + + LDPKIPPNPN + AVSS
Sbjct: 5   SVSSEISTSQLPWKHRLTLRFAALLFNASVRSDLTVNRRLLNFLDPKIPPNPNSIHAVSS 64

Query: 64  SDFTVDTSRDLFLRIFTPTD--------CAGDSLPPPV 94
           SD T+D SRDLFLRIFTPTD         A DSL PPV
Sbjct: 65  SDLTIDASRDLFLRIFTPTDAAINAAAVAATDSLLPPV 102

BLAST of Lag0039399 vs. NCBI nr
Match: XP_004141618.1 (probable carboxylesterase 18 [Cucumis sativus] >KGN52616.1 hypothetical protein Csa_008680 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-24
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 2  SSSSCSEISTSELPWKHRLTFRFADLIFKASLRSDLTVNRWIFSILDPKIPPNPNPVDAV 61
          SSS C E+ST +LPWKH++T RFA L+F  SLRSD TVNR + + LDPKIPPNPN   +V
Sbjct: 3  SSSVCYELSTPQLPWKHKVTLRFATLLFNTSLRSDFTVNRRLLTFLDPKIPPNPNSAHSV 62

Query: 62 SSSDFTVDTSRDLFLRIFTPTDCAG--DSLP 91
          SSSD T+DTSRDLFLRIFTP   A   +SLP
Sbjct: 63 SSSDLTIDTSRDLFLRIFTPNPTAALDESLP 93

BLAST of Lag0039399 vs. ExPASy Swiss-Prot
Match: Q9LT10 (Probable carboxylesterase 18 OS=Arabidopsis thaliana OX=3702 GN=CXE18 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-10
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 14 LPWKHRLTFRFADLIFKASLRSDLTVNRWIFSILDPKIPPNPNPVDAVSSSDFTVDTSRD 73
          LP K R+       +   + R D T+NR    + D + PPNP PV+ VS+SDF VD SRD
Sbjct: 13 LPLKTRIALTVISTMTDNAQRPDGTINRRFLRLFDFRAPPNPKPVNIVSTSDFVVDQSRD 72

Query: 74 LFLRIFTPTDCAGDSLP 91
          L+ R++TP   +GD +P
Sbjct: 73 LWFRLYTP-HVSGDKIP 88

BLAST of Lag0039399 vs. ExPASy Swiss-Prot
Match: Q940G6 (Gibberellin receptor GID1C OS=Arabidopsis thaliana OX=3702 GN=GID1C PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 28/71 (39.44%), Postives = 37/71 (52.11%), Query Frame = 0

Query: 27 LIFKASLRSDLTVNRWIFSILDPKIPPNPNPVDAVSSSDFTVDTSRDLFLRIFTPTDCAG 86
          L +    R D T NR +   LD K+P N NPV+ V S D  +D   +L  R++ P D AG
Sbjct: 29 LAYNLLRRPDGTFNRHLAEFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPAD-AG 88

Query: 87 DSLPPPVTPTQ 98
           S  P +T  Q
Sbjct: 89 TS--PSITDLQ 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022973499.12.7e-2874.44probable carboxylesterase 18 [Cucurbita maxima][more]
XP_022925491.13.6e-2873.63probable carboxylesterase 18 [Cucurbita moschata][more]
KAG6592331.17.9e-2873.33putative carboxylesterase 18, partial [Cucurbita argyrosperma subsp. sororia] >K... [more]
XP_023536262.15.1e-2769.39probable carboxylesterase 18 [Cucurbita pepo subsp. pepo][more]
XP_004141618.12.4e-2465.93probable carboxylesterase 18 [Cucumis sativus] >KGN52616.1 hypothetical protein ... [more]
Match NameE-valueIdentityDescription
Q9LT102.7e-1042.86Probable carboxylesterase 18 OS=Arabidopsis thaliana OX=3702 GN=CXE18 PE=1 SV=1[more]
Q940G61.3e-0439.44Gibberellin receptor GID1C OS=Arabidopsis thaliana OX=3702 GN=GID1C PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029058Alpha/Beta hydrolase foldGENE3D3.40.50.1820alpha/beta hydrolasecoord: 2..99
e-value: 1.8E-10
score: 42.5
NoneNo IPR availablePANTHERPTHR23024:SF434ACETYL ESTERASEcoord: 9..85
NoneNo IPR availablePANTHERPTHR23024ARYLACETAMIDE DEACETYLASEcoord: 9..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039399.1Lag0039399.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity