Lag0039334 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039334
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHIPL1 protein-like
Locationchr2: 41596351 .. 41596918 (-)
RNA-Seq ExpressionLag0039334
SyntenyLag0039334
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCGTTTAATTGGAGCCATTCTCTTCCTTTGTGGCCTGTTATTGCTTGTTCATCCTACAGTTTCACTTCCCTTGTGCTCTGATTCAAGTAGGTTCTTGTTCTCCTCTTTTACTTGGTTTAATGTTTACTAATTCTATTGTCTCAAATCTCTATACCCTTTTACTATTTTGGTGCTTCAGTTTCTTGTTGACATCTTGTGATTCTTTTGTCTATGATTTAATTGGTGTAGCTGCGCCCTTTACTCTGAACTCTACATTGAAGTTTTGTCCTTATAACGGGAGTGTTTGCTACAACTCTACCCAAGATGGGATTATACAGAGACAATTCCAAGGGATGAACATTTCTGATCCTGCCTGTGCTTCCCTTGTCAAATCCATTGCTTGTGCGGTAAGACTTGTTGATCTCCAAAACAAGACTGACAATTTCCCCCTTTTTTTCTTGATTAAGATATATTAATGCTTAGTATATGGCCTAGCTGATTGTTCTTTTTTGTTATGTCTTTTCTTTAACTGTATTTAGAATGAAAAGCCCTGTTTTACTGATGCTTTTGAGGAGGTTCTGTAG

mRNA sequence

ATGGGGCGTTTAATTGGAGCCATTCTCTTCCTTTGTGGCCTGTTATTGCTTGTTCATCCTACAGTTTCACTTCCCTTGTGCTCTGATTCAACTGCGCCCTTTACTCTGAACTCTACATTGAAGTTTTGTCCTTATAACGGGAGTGTTTGCTACAACTCTACCCAAGATGGGATTATACAGAGACAATTCCAAGGGATGAACATTTCTGATCCTGCCTGTGCTTCCCTTGTCAAATCCATTGCTTGTGCGAATGAAAAGCCCTGTTTTACTGATGCTTTTGAGGAGGTTCTGTAG

Coding sequence (CDS)

ATGGGGCGTTTAATTGGAGCCATTCTCTTCCTTTGTGGCCTGTTATTGCTTGTTCATCCTACAGTTTCACTTCCCTTGTGCTCTGATTCAACTGCGCCCTTTACTCTGAACTCTACATTGAAGTTTTGTCCTTATAACGGGAGTGTTTGCTACAACTCTACCCAAGATGGGATTATACAGAGACAATTCCAAGGGATGAACATTTCTGATCCTGCCTGTGCTTCCCTTGTCAAATCCATTGCTTGTGCGAATGAAAAGCCCTGTTTTACTGATGCTTTTGAGGAGGTTCTGTAG

Protein sequence

MGRLIGAILFLCGLLLLVHPTVSLPLCSDSTAPFTLNSTLKFCPYNGSVCYNSTQDGIIQRQFQGMNISDPACASLVKSIACANEKPCFTDAFEEVL
Homology
BLAST of Lag0039334 vs. NCBI nr
Match: XP_004152448.1 (HIPL1 protein [Cucumis sativus] >KGN64266.1 hypothetical protein Csa_014358 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34
Identity = 77/94 (81.91%), Postives = 81/94 (86.17%), Query Frame = 0

Query: 1  MGRLIGAILFLCGLLLLVHPTVSLPLCSDSTAPFTLNSTLKFCPYNGSVCYNSTQDGIIQ 60
          M R  G ILFLCGLLLLVHPTVSLPLCSDSTAPFTLN+TLKFCPYNGSVC NSTQDG+IQ
Sbjct: 1  MERFTGVILFLCGLLLLVHPTVSLPLCSDSTAPFTLNTTLKFCPYNGSVCCNSTQDGVIQ 60

Query: 61 RQFQGMNISDPACASLVKSIACANEKPCFTDAFE 95
          RQFQ MNISDPACASLVKSIACA   P   D ++
Sbjct: 61 RQFQRMNISDPACASLVKSIACARCDPFSGDLYQ 94

BLAST of Lag0039334 vs. NCBI nr
Match: XP_038894621.1 (HIPL1 protein-like isoform X1 [Benincasa hispida] >XP_038894622.1 HIPL1 protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 74/94 (78.72%), Postives = 80/94 (85.11%), Query Frame = 0

Query: 1  MGRLIGAILFLCGLLLLVHPTVSLPLCSDSTAPFTLNSTLKFCPYNGSVCYNSTQDGIIQ 60
          M R I  ILFLCGLLL VHPTVSLPLCSDSTAPFTLN+TLKFCPYNGSVC NSTQDG+IQ
Sbjct: 1  MERFIKVILFLCGLLLFVHPTVSLPLCSDSTAPFTLNTTLKFCPYNGSVCCNSTQDGVIQ 60

Query: 61 RQFQGMNISDPACASLVKSIACANEKPCFTDAFE 95
          RQFQGMNIS+PACASL+KSI CA   P   D ++
Sbjct: 61 RQFQGMNISEPACASLIKSIVCARCDPFSGDLYQ 94

BLAST of Lag0039334 vs. NCBI nr
Match: XP_008437735.1 (PREDICTED: HIPL1 protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 0

Query: 1  MGRLIGAILFLCGLLLLVHPTVSLPLCSDSTAPFTLNSTLKFCPYNGSVCYNSTQDGIIQ 60
          M R  G ILFLCGLLL VH TVSLPLCSDSTAPFTLN+TLKFCPYNGSVC NSTQDG IQ
Sbjct: 1  MERFTGVILFLCGLLLFVHSTVSLPLCSDSTAPFTLNTTLKFCPYNGSVCCNSTQDGAIQ 60

Query: 61 RQFQGMNISDPACASLVKSIACANEKPCFTDAFE 95
          RQFQGMNISDPACASLVKSIACA   P   D ++
Sbjct: 61 RQFQGMNISDPACASLVKSIACARCDPFSGDLYQ 94

BLAST of Lag0039334 vs. NCBI nr
Match: XP_008437727.1 (PREDICTED: HIPL1 protein-like isoform X1 [Cucumis melo] >TYJ99117.1 HIPL1 protein-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 0

Query: 1  MGRLIGAILFLCGLLLLVHPTVSLPLCSDSTAPFTLNSTLKFCPYNGSVCYNSTQDGIIQ 60
          M R  G ILFLCGLLL VH TVSLPLCSDSTAPFTLN+TLKFCPYNGSVC NSTQDG IQ
Sbjct: 1  MERFTGVILFLCGLLLFVHSTVSLPLCSDSTAPFTLNTTLKFCPYNGSVCCNSTQDGAIQ 60

Query: 61 RQFQGMNISDPACASLVKSIACANEKPCFTDAFE 95
          RQFQGMNISDPACASLVKSIACA   P   D ++
Sbjct: 61 RQFQGMNISDPACASLVKSIACARCDPFSGDLYQ 94

BLAST of Lag0039334 vs. NCBI nr
Match: XP_022994579.1 (HIPL1 protein-like [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 3.1e-33
Identity = 76/93 (81.72%), Postives = 79/93 (84.95%), Query Frame = 0

Query: 1  MGRLIGAILFLCGLLLLVHPTVSLPLCSDSTAPFTLNSTLKFCPYNGSVCYNSTQDGIIQ 60
          MGR IG ILFLCGLLLLVHPTVSLPLCSDSTAP TLNSTL+FCPY GSVC NSTQDG IQ
Sbjct: 1  MGRFIGFILFLCGLLLLVHPTVSLPLCSDSTAPSTLNSTLEFCPYKGSVCCNSTQDGDIQ 60

Query: 61 RQFQGMNISDPACASLVKSIACANEKPCFTDAF 94
          RQFQGMNISDPAC+SLVKSI CA   P   D +
Sbjct: 61 RQFQGMNISDPACSSLVKSIVCARCDPFSGDLY 93

BLAST of Lag0039334 vs. ExPASy Swiss-Prot
Match: Q9SSG3 (HIPL1 protein OS=Arabidopsis thaliana OX=3702 GN=HIPL1 PE=3 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-18
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 23 SLPLCSDSTAPFTLNSTLKFCPYNGSVCYNSTQDGIIQRQFQGMNISDPACASLVKSIAC 82
          +LPLCSDS AP  +NSTL FCPY G  C N+ +D  + +QFQ MNISD  CAS+VKSI C
Sbjct: 23 ALPLCSDSRAPSEVNSTLSFCPYKGKTCCNTMKDTSLMKQFQAMNISDKGCASVVKSILC 82

Query: 83 ANEKPCFTDAFEE 96
          AN  P  +D F +
Sbjct: 83 ANCDPFSSDLFRD 95

BLAST of Lag0039334 vs. ExPASy Swiss-Prot
Match: Q94F08 (HIPL2 protein OS=Arabidopsis thaliana OX=3702 GN=HIPL2 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 8.6e-10
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 14 LLLLVHPTVSLPLCSDSTAPFTLNSTLKFC-PYNGSVCYNSTQDGIIQRQFQGMNISDPA 73
          LLLL+  T S  LCSDS  P   N TL+FC  Y    C NS  D  +Q +F  MNISD  
Sbjct: 15 LLLLLSETTSHLLCSDSKTPVNNNETLQFCDSYKERSCCNSKDDLQLQNRFNSMNISDSN 74

Query: 74 CASLVKSIACA 84
          C+SL+KSI C+
Sbjct: 75 CSSLLKSILCS 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004152448.11.7e-3481.91HIPL1 protein [Cucumis sativus] >KGN64266.1 hypothetical protein Csa_014358 [Cuc... [more]
XP_038894621.11.4e-3378.72HIPL1 protein-like isoform X1 [Benincasa hispida] >XP_038894622.1 HIPL1 protein-... [more]
XP_008437735.11.4e-3380.85PREDICTED: HIPL1 protein-like isoform X2 [Cucumis melo][more]
XP_008437727.11.4e-3380.85PREDICTED: HIPL1 protein-like isoform X1 [Cucumis melo] >TYJ99117.1 HIPL1 protei... [more]
XP_022994579.13.1e-3381.72HIPL1 protein-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9SSG35.0e-1857.53HIPL1 protein OS=Arabidopsis thaliana OX=3702 GN=HIPL1 PE=3 SV=2[more]
Q94F088.6e-1050.70HIPL2 protein OS=Arabidopsis thaliana OX=3702 GN=HIPL2 PE=2 SV=2[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19328HEDGEHOG-INTERACTING PROTEINcoord: 9..93
NoneNo IPR availablePANTHERPTHR19328:SF68HIPL1 PROTEINcoord: 9..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039334.1Lag0039334.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity