Lag0039330 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039330
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cupin_3 domain-containing protein
Location	chr2: 41565134 .. 41570041 (+)
RNA-Seq Expression	Lag0039330
Synteny	Lag0039330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGCTGTGGACAGTTTCTTATTACTAAATTTAAAATCATCTACTCTCCACACTAAACCTAGAAACTTCTCTTTCTACTCTGCAAAAAGGGCACCGTCTCTTCAAATTCGAGCAGATTCCATGGCGACTGAGAGGCTGGGCATCAAAGTTGAGAAGAATCCTCCTGAATCCAAGCTTACCGAACTCGGTGTTCGTCAATGGCCCAAGTATTTTCGTTTCTCTACCTCATTTCTTGCTTATTTTTCTCCATTTAATTGCTGCAACATTACTGTTTGCATTTCTGCGCCCAAATTGTTACCGATTGTTGATGCTATCGGTTGTTCTTTTGACTATCTTGATGGCCTTAATATAAGTGATGTTAGCATTTGGAATCGGGTTTCAATCTATCTCTGAAGTTGATGAATGTGGATAAATAGATGGATGATGGCGTGTTTAAGGATTTGTTATTTTGATATTTGACCATATCAACAGTAATGGACATGTACTCCCGACCAAGGTCAAGGGTTCGAATTCCCCCACCCACAAACATTATTGAACTCAAAAAAAAAAAAAAAAAAGACCACATCAAGCTTCTGGGTGTAAGTCCTTTTTGACTAAACAAAGTATTCATTAATCATGAAGAAATTTCCCAATGGGATACAAAACGAGCTACATCACTCGAAGCTAAATTCAAGATCCACTATGGATAATTCTCTAACTACAAAGTAGGATTAGATATTAAACTAGACTTTGCTAATTGATGAGCTAACTCATTACAATCTCTATAAACATGGCCAAAACAAATGGAGTCAAACAATGATTTTATCCCAATAATACCCCAAATCATCACATGGATTTCCGATTGGCAGTTTGACTCCCCATTTAAAATATTCACTGTAGAAAGCGAGTCGGAAAAAATCCATATATCTTTTAAATCCATTCTGTTGGCTAAGCGAATTGCTTCAAGAATAGCCCGAGTTTCAGAACATAATGGTGAAGTTAGAGACTCCTGAACATCTCACATAGTCGCCAGCACATGGCCTTTTGGATCTCTTATAATCACCCCTATACCCGTTCTGTGGGTCAAGAAATCACAAGCTGCATCGACATGGATAATAATCTTGTCACCTTTCCAACCATAACATTGGTCAGCTTTTTGGACGACACCATTAGCATGTTGAAACTCCTCAATGTATCCAATTATCCTTGAGCACTAATTGCCAATATTAGGCAACGGTCGATTATGTAAAATATGATTACGATCATTCTAGATTGCCCGAGACGCCACACATATTAACTCAAAAAGATTACCCTAGTAGACGATACTTAGGCGCAACCACCTATCTTGGACATTAGGAAAAGCTCTATCTCCAATGGTAATCTCCGAATGAAGCGCTCTCCATATCATCTTGGCTCGTTTACGTCTGAATAATGCATGGTCTGTTGTCTCAGGATGTTTCTTACAAACGGAACATAATGGATCAGCATCCACATGGTGAGCTCTCAGATTAAGTGATGTAGAAATACAATTATGAAAAGAAAAGCCTTCCAAACAAAATGTTTAATTTTATTTGGTATCTTTAGGCTCCAAGCTTCTGTGTTGTAAGTTATGTCTTTTGTTTCTTGTTTGACTGTGGAATCTTATGATATCTGCCCACAATTTCGTGGTGGCTAAGGGGTCACCATGTTGAAACCGTTGGAAAAAATACCAAAGTAGGAAGAGGGCGTGCTATTTATGAATGTGCTTATTTATTTTATTATTTTTATTTTTATTTGGTCTGTAAGATTAAGATAAAAGAAAAAGGTCTAAGCTATGAGTTATAAACTAATCACACACTGATTTGTCATTTTGAAATCAATCCATTCCGCAAGTATAGTTCTTCTGACCGTATTTATTTTCCATAGCTTCCCATAATTATATGGTTGTACACTTGTGCTTGGATACTTGGAAAATAGATGCTAAGAATTCTTATGGCTTGGTCTAGTGAATAAGGACAATGCAAATATTAAAGGGTCTGGTAAATGTCAAGTCAGGGTTGCCACCTACCTAGGATTTAATATCCTATGAATTTTACATGACAATAAAATGTTGTAGGGTCAAGCAATTGATTTGTAAGATTAGTCATAAAGTACAGTGAAAACTCACACATATCAAACTAATACTGTAACATAAAATATATGTTTTTTGTTTAGAATCTTTGTCAATAGTAGTTTTACTATAGTCAAAATCACTAGCTTTAGAAGTTTCACGAGCTTTTCTTTTTCTTTTTCACCTATGTAGTGAGTCAAAATTTCATTTGTTGTTGAAGACATTTGAAATTTTTTCTAGGAATTTCTTTTAGGTTTGCATGAATTATACTTATTGTTAGACTTATGAATTGAAGCCATAATACCAATGACAACGTACAAACAAAATTCCTAATACATCTTCCCTAAGATTGTTGGAACATATGTCAAAATACGACGAGACAGGAATATTCTAAACCCAAATAGAACAATAAACTAACTCATATAAAATATTTACTAGTAAAAACAAGGGTTTAGAAAGCTTGTTTTGGATTGAGGTGCTTTTCTTAATGCTATCTTTAGAGCAGAAGTGCCCTCACTTGCTTCGAGTTACTCGACCCTCCACTCCTAAGCTACAACACCTTTCAAAAGACCTTGTGTGTCGAGTTTTTTAATAATCCTATTTGGTTTGAATGCTTAGTAAAACAGAGAAAATGAATCACTCCATGCAGAAAAGACTTCCATTGATAACTAATCTGTTTTGAAGACGACATTAAAAACCAACAAGGCCAACGTGCAGTATGAACATCTATACTATTTATGCTTTAAACCTCCACTTGTGTAAGTAACTGTACGTTTGATGTAAGAGTCTAATTCTAAATGAAACCAAGACATGTATTTTGTTTGGTGTTGCCCACAAACAACTCATGAAAGTTTCACCAATGTGGGTGTTGGGGTGAGGTCGATACAATAGGGATTTGGGCTACTTCCCTTAAAGCACTCATGAAACAGGAATATGTGTGCATAATCGTTTAAAATGCAAAACAGACTAGAATCCCTAAACTAGCTTGTATTATGTTTGGGGTAGTGGAAAGTTGAATTAATGATCCTGGTTCAAGACTTTGTTTACTCCTTTAAATGTCCCCTTACTTACATTAAGGGGAGGTTCAAACCCAGAAGATACGTACACCTATTACATTGTAAAGAGGCTTGTCCTATTATTTTCTTTCTTTCTTTCTTTAAAAAAGAACTATTTATTTCAATTTGGTTTTATGTTTGGGAAATTTTAAATTATGTGCAGATTGTAAAATAACTTAGGCCCCGTTTGATAACCATATGGTTTTTGGTTTTTGGTTTTTGAAAATTATACTTGTTTTCCCCATTTTTCTACCATGGTTTTCACATTTTTCTAGGGCACATTTGAATTTCAAGCCAAATTCCAAAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTTAGTTTTTAAAATTTGGCTTGGTTTTTGAAAACATGGAAAAAATGTGTTAGGAAAACAAAGAAATTTGTAGGTGGAAGTAGTGTTTATAGGCTTAATTTTCAAAAACTAAAAACCAAAAACCAAATGGTTATCGAATGGGGCCTTAATAATTTTTTTAAGAGTTCTATTTATCTATTATTTTAATTAGTTTGCAACACTAAAACAAAAGGAAGAGGTCTAAGACCACTCCTTTTTCTTAAGGGAGTAGTTACTCCATGATGCACATTGGCTCTAACATCATCCTCAAAACAGAGTTTTGAGATTTTTTCAGAGTTTTCACAAGAAGTTTTTAGTTAGCAATCAAAACCCCTTCTGTAGAAAATGAATACTTTCTCTGTTTTATTACACACCAGCCAAATTGGATTCAAAAGAGAACTTAGTTGCACACAAGGTCTCTTGAAGTGTCGTTTCTTAGGAGTAGAGTGTCAAATAAATCAATGTAAGTGAGGCATGTCTACTTTAGGGACAACATTCAGAAATGCACCAGGACCCGTACTATTCTATTTGTTTTTACAGTATTTCTGCTCTACCCTATTATGGCAAATGTTTGAACAATCTCAGAGAAAATGTATTAGTAATTTTGTTTGTGTGTTGTCTTGGGCGTTATGTCTTCAATTCATGAGTCTAATATAAGTATGATTCATGCAAACCTGAAAAATTAACTGGAAAAAACTTTCAAATCTTGGCAACAGCAAACGAAATTTTAGCTCACTACCTTAGACCTTTTTTTTTTTTGAAAAACTACCTTAGACCTTTATTGTGTAAATATCTACATGTAAAGAAGGAAAGTCTAAACTCTAATGTAGTGCTTCTGATTCTAGTAAAACTACCGTCGACAAAGATCATTTATGTGATGTTAATAGTTTGACTATGTCTTACAATGTTTAGAAAATTTTCTATTCTACTAAAGCTTCCATAAAATTATGAGAAGTATGGTAAAAAGGACCAAGCTTTAAAAGGTATGTCCTTGAAAAATGGAACTACCTTAGACCTCTTACTTTTGTTTTACTTTACAAACCAATTTAAAATAATAAATAAGTAAATACAACTAAAAAACTTCAACTTACCTAACAAAAACTTGAAAAACCTGAGTTGAGGAGATAGATTTCTCATGGATGCATATATGTTGGATATTTGGTTGGCTTGATTGTGAAGTTTAGACTGAAAATTGGATGTTGAACTGTGAATCCAATAGGTGGGGGTGTGGGCCGAGCAAATTCCCATGGACATATTCGGACAGAGAGACCTGCTATCTGCTACAAGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCAGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGTTAG

mRNA sequence

ATGGCTTCCGCTGTGGACAGTTTCTTATTACTAAATTTAAAATCATCTACTCTCCACACTAAACCTAGAAACTTCTCTTTCTACTCTGCAAAAAGGGCACCGTCTCTTCAAATTCGAGCAGATTCCATGGCGACTGAGAGGCTGGGCATCAAAGTTGAGAAGAATCCTCCTGAATCCAAGCTTACCGAACTCGGTGTTCGTCAATGGCCCAAGTGGGGGTGTGGGCCGAGCAAATTCCCATGGACATATTCGGACAGAGAGACCTGCTATCTGCTACAAGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCAGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGTTAG

Coding sequence (CDS)

ATGGCTTCCGCTGTGGACAGTTTCTTATTACTAAATTTAAAATCATCTACTCTCCACACTAAACCTAGAAACTTCTCTTTCTACTCTGCAAAAAGGGCACCGTCTCTTCAAATTCGAGCAGATTCCATGGCGACTGAGAGGCTGGGCATCAAAGTTGAGAAGAATCCTCCTGAATCCAAGCTTACCGAACTCGGTGTTCGTCAATGGCCCAAGTGGGGGTGTGGGCCGAGCAAATTCCCATGGACATATTCGGACAGAGAGACCTGCTATCTGCTACAAGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCAGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGTTAG

Protein sequence

MASAVDSFLLLNLKSSTLHTKPRNFSFYSAKRAPSLQIRADSMATERLGIKVEKNPPESKLTELGVRQWPKWGCGPSKFPWTYSDRETCYLLQGKVKVTPAGSEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG

Homology

[Close]

BLAST of Lag0039330 vs. NCBI nr
Match: XP_004141517.1 (uncharacterized protein LOC101218376 [Cucumis sativus] >KGN52597.1 hypothetical protein Csa_008472 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 8.3e-64
Identity = 122/137 (89.05%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 1   MASAVDSFLLLNLKSSTLHTKPRNFSFYSAKRAPSLQIRADSMATERLGIKVEKNPPESK 60
           MASAVD FLLLNLK  +L TKP N S Y  KRAPSLQIRADSMATERLGIKVEKNP ESK
Sbjct: 1   MASAVDGFLLLNLKPQSLLTKPTNVSLYFGKRAPSLQIRADSMATERLGIKVEKNPSESK 60

Query: 61  LTELGVRQWPKWGCGPSKFPWTYSDRETCYLLQGKVKVTPAGSEESVEIGAGDLVVFPKG 120
           LTELGVRQWPKWGCGPSKFPWTYSD+ETCYLL+GKVKVTPAGS ESVEIGAGDLVVFPKG
Sbjct: 61  LTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSNESVEIGAGDLVVFPKG 120

Query: 121 MSCTWDVSVAVDKHYNF 138
           MSCTWDVSVAVDKHY F
Sbjct: 121 MSCTWDVSVAVDKHYKF 137

[Close]

BLAST of Lag0039330 vs. NCBI nr
Match: XP_038889944.1 (uncharacterized protein LOC120079700 [Benincasa hispida])

HSP 1 Score: 252.3 bits (643), Expect = 2.4e-63
Identity = 121/138 (87.68%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MASAVDSFLLLNLKSSTLHTKPRNFSFYSAKRAPSLQIRADSMATERLGIKVEKNPPESK 60
           MASAV  F LLNLK   L +KP N S Y  KRAPSLQIRADSMATE LGIKVEKNPPESK
Sbjct: 1   MASAVSGFSLLNLKPHPLLSKPTNVSLYFGKRAPSLQIRADSMATETLGIKVEKNPPESK 60

Query: 61  LTELGVRQWPKWGCGPSKFPWTYSDRETCYLLQGKVKVTPAGSEESVEIGAGDLVVFPKG 120
           LTELGVR+WPKWGCGPSKFPWTYSD+ETCYLL+GKVKVTPAGSEESVEIGAGDLVVFPKG
Sbjct: 61  LTELGVRKWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSEESVEIGAGDLVVFPKG 120

Query: 121 MSCTWDVSVAVDKHYNFG 139
           MSCTWDVSVAVDKHYNFG
Sbjct: 121 MSCTWDVSVAVDKHYNFG 138

[Close]

BLAST of Lag0039330 vs. NCBI nr
Match: XP_008459495.1 (PREDICTED: uncharacterized protein LOC103498612 [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 2.4e-63
Identity = 121/138 (87.68%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MASAVDSFLLLNLKSSTLHTKPRNFSFYSAKRAPSLQIRADSMATERLGIKVEKNPPESK 60
           MASAVD FL LNLK  +L TKP N S Y  KRA SLQIRADSMATERLGIKVEKNP ESK
Sbjct: 1   MASAVDGFLCLNLKPRSLLTKPTNVSLYFGKRAQSLQIRADSMATERLGIKVEKNPSESK 60

Query: 61  LTELGVRQWPKWGCGPSKFPWTYSDRETCYLLQGKVKVTPAGSEESVEIGAGDLVVFPKG 120
           L+ELGVRQWPKWGCGPSKFPWTYSD+ETCYLL+GKVKVTPAGS+ESVEIGAGDLVVFPKG
Sbjct: 61  LSELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSDESVEIGAGDLVVFPKG 120

Query: 121 MSCTWDVSVAVDKHYNFG 139
           MSCTWDVSVAVDKHYNFG
Sbjct: 121 MSCTWDVSVAVDKHYNFG 138

[Close]

BLAST of Lag0039330 vs. NCBI nr
Match: XP_023534884.1 (uncharacterized protein LOC111796480 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534885.1 uncharacterized protein LOC111796480 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 119/138 (86.23%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MASAVDSFLLLNLKSSTLHTKPRNFSFYSAKRAPSLQIRADSMATERLGIKVEKNPPESK 60
           MASAV+ F LLNLK  T  +KPRN S   AKRAPSLQIRADSMATERLGIKVEKNPPESK
Sbjct: 1   MASAVNGFSLLNLKPPTSLSKPRNLSLNFAKRAPSLQIRADSMATERLGIKVEKNPPESK 60

Query: 61  LTELGVRQWPKWGCGPSKFPWTYSDRETCYLLQGKVKVTPAGSEESVEIGAGDLVVFPKG 120
           LTELGVRQWPKWGCGPSKFPWTYSD+ETCYLL+GKVKVTPAGS+E VEIGAGDLVVFP G
Sbjct: 61  LTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSDEGVEIGAGDLVVFPAG 120

Query: 121 MSCTWDVSVAVDKHYNFG 139
           MSCTWDVS+AVDKHY FG
Sbjct: 121 MSCTWDVSIAVDKHYKFG 138

[Close]

BLAST of Lag0039330 vs. NCBI nr
Match: KAG6592281.1 (hypothetical protein SDJN03_14627, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.1 bits (632), Expect = 4.6e-62
Identity = 118/138 (85.51%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 1   MASAVDSFLLLNLKSSTLHTKPRNFSFYSAKRAPSLQIRADSMATERLGIKVEKNPPESK 60
           MAS V+ F LLNLK  T  +KPRN S   AKRAPSLQIRADSMATERLGIKVEKNPPESK
Sbjct: 1   MASIVNGFSLLNLKQPTSLSKPRNLSLNFAKRAPSLQIRADSMATERLGIKVEKNPPESK 60

Query: 61  LTELGVRQWPKWGCGPSKFPWTYSDRETCYLLQGKVKVTPAGSEESVEIGAGDLVVFPKG 120
           LTELGVRQWPKWGCGPSKFPWTYSD+ETCYLL+GKVKVTPAGS+E VEIGAGDLVVFP G
Sbjct: 61  LTELGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSDEGVEIGAGDLVVFPAG 120

Query: 121 MSCTWDVSVAVDKHYNFG 139
           MSCTWDVS+AVDKHY FG
Sbjct: 121 MSCTWDVSIAVDKHYKFG 138

The following BLAST results are available for this feature:

BLAST of Lag0039330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141517.1	8.3e-64	89.05	uncharacterized protein LOC101218376 [Cucumis sativus] >KGN52597.1 hypothetical ...	[more]
XP_038889944.1	2.4e-63	87.68	uncharacterized protein LOC120079700 [Benincasa hispida]	[more]
XP_008459495.1	2.4e-63	87.68	PREDICTED: uncharacterized protein LOC103498612 [Cucumis melo]	[more]
XP_023534884.1	1.6e-62	86.23	uncharacterized protein LOC111796480 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
KAG6592281.1	4.6e-62	85.51	hypothetical protein SDJN03_14627, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0039330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008579	(S)-ureidoglycine aminohydrolase, cupin-3 domain	PFAM	PF05899	Cupin_3	coord: 62..135 e-value: 3.3E-32 score: 110.0
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 38..137 e-value: 6.0E-39 score: 133.7
None	No IPR available	PANTHER	PTHR33271:SF22	OS04G0445200 PROTEIN	coord: 30..137
None	No IPR available	PANTHER	PTHR33271	OS04G0445200 PROTEIN	coord: 30..137
None	No IPR available	CDD	cd02227	cupin_TM1112-like	coord: 69..137 e-value: 2.86805E-38 score: 122.304
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 60..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039330.1	Lag0039330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity