Lag0038586 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038586
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 20899816 .. 20900187 (-)
RNA-Seq Expression	Lag0038586
Synteny	Lag0038586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGGGGTATCCACTCCTTGACATTGATCCAGAGATAGAAAAAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAAAAGGAGCAACAAGAGTTGAGCGCACGAGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCTCAAGTTGATCCACAAGATCGTGGAAGAGAGCAGAATGGCGGGAGAATTCCTCCTGTTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCTGATTTACATTGTGGAAGATCGCAACCGAGCAATAAAGGACTACACTTTACCAGTTTTCCAGACATTAAATCAAGGAATTTTGGAGCCACCGATTGATGCTTGA

mRNA sequence

ATGAGCAAGGGGTATCCACTCCTTGACATTGATCCAGAGATAGAAAAAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAAAAGGAGCAACAAGAGTTGAGCGCACGAGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCTCAAGTTGATCCACAAGATCGTGGAAGAGAGCAGAATGGCGGGAGAATTCCTCCTGTTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCTGATTTACATTGTGGAAGATCGCAACCGAGCAATAAAGGACTACACTTTACCAGTTTTCCAGACATTAAATCAAGGAATTTTGGAGCCACCGATTGATGCTTGA

Coding sequence (CDS)

ATGAGCAAGGGGTATCCACTCCTTGACATTGATCCAGAGATAGAAAAAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAAAAGGAGCAACAAGAGTTGAGCGCACGAGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGAACCTCCTGGAGTCGATCCTCAAGTTGATCCACAAGATCGTGGAAGAGAGCAGAATGGCGGGAGAATTCCTCCTGTTCCTCCAGTTCCACTGGTGCCACAACAAGAAAATCTGATTTACATTGTGGAAGATCGCAACCGAGCAATAAAGGACTACACTTTACCAGTTTTCCAGACATTAAATCAAGGAATTTTGGAGCCACCGATTGATGCTTGA

Protein sequence

MSKGYPLLDIDPEIEKTFRRRRKEQRRKKKEQQELSAREFLEEASYIQEFPMEPPGVDPQVDPQDRGREQNGGRIPPVPPVPLVPQQENLIYIVEDRNRAIKDYTLPVFQTLNQGILEPPIDA

Homology

[Close]

BLAST of Lag0038586 vs. NCBI nr
Match: XP_024033511.1 (uncharacterized protein LOC112095639 [Citrus clementina])

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04
Identity = 35/117 (29.91%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 7   LLDIDPEIEKTFRRRRKEQRRKKKEQQELSAREFLEEASYIQEFPMEPPGVDPQVDPQDR 66
           +   DPEIE+T RR R+EQR  K     L      +E +     P++P  +  + +    
Sbjct: 8   VFQFDPEIERTIRRLRREQRNSK---TTLGINNLQDEGNLNPHGPLQPANIQEEHNEYAN 67

Query: 67  GREQNGGRIPPVPPVPLVPQQENLIYIVEDRNRAIKDYTLPVFQTLNQGILEPPIDA 124
           GR+               P   N+IY+ ++R+RAI+DY +   Q ++ GI+ P +DA
Sbjct: 68  GRQ---------------PGNNNIIYMADNRDRAIRDYVVLTPQVVHPGIIRPEVDA 106

[Close]

BLAST of Lag0038586 vs. NCBI nr
Match: XP_024046666.1 (uncharacterized protein LOC112101006 [Citrus clementina])

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04
Identity = 35/120 (29.17%), Postives = 57/120 (47.50%), Query Frame = 0


Query: 4   GYPLLDIDPEIEKTFRRRRKEQRRKKKEQQELSAREFLEEASYIQEFPMEPPGVDPQVDP 63
           G  +   DPEIE+T RR R+EQR  K            +E +     P++P  +  + + 
Sbjct: 5   GSVIFQFDPEIERTIRRLRREQRNPK---TVTGMNNLQDEGNLNPHGPLQPANIQEEQNE 64

Query: 64  QDRGREQNGGRIPPVPPVPLVPQQENLIYIVEDRNRAIKDYTLPVFQTLNQGILEPPIDA 123
              GR+               P   N+IY+ +DR+RAI+DY +   Q ++ GI+ P ++A
Sbjct: 65  HVNGRQ---------------PGNNNIIYMADDRDRAIRDYAVLTPQVVHPGIIRPEVNA 106

The following BLAST results are available for this feature:

BLAST of Lag0038586 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024033511.1	3.0e-04	29.91	uncharacterized protein LOC112095639 [Citrus clementina]	[more]
XP_024046666.1	3.9e-04	29.17	uncharacterized protein LOC112101006 [Citrus clementina]	[more]

BLAST of Lag0038586 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038586.1	Lag0038586.1	mRNA