Lag0038534 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038534
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr2: 19840220 .. 19840753 (+)
RNA-Seq Expression	Lag0038534
Synteny	Lag0038534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACCAATCTTGCGGAGTGCACTAACTCAGTGTTGAAAGATGCACGAGAGCTCCCAATCACCGCATTCATGGATCATATCAGAGGGTGGCTCCAAGCAAAATACTACAAACGCAGGAATAAGCACTCCAGTAACCCGAGCCAGTGGTCGAAGTTTGCTACAGAAATCTTGGAAAAAGCAGAGGAGAAGGCAAGGAGGCACGTGGTCAAACCTATTGCTCGATATGAGTTTCAGGTCGAGGATGGACATTTGGGTGGACGTGTCAACCTTCACGCTAGAACGTGCACCTGTCGTGAATTTGAGTATTACGAACTTCCATGCTCCCATGCGATCGCTGCATGCACTTATCGACATATCGAATATCATACTCTTTGTTCCAAAGTCTACCATGTCGACTCTTTGATAGATTCATATGCACAACCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGATCACCTCAGTTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGGGTTGGTCGTCGTCAGACGTTGA

mRNA sequence

ATGACCACCAATCTTGCGGAGTGCACTAACTCAGTGTTGAAAGATGCACGAGAGCTCCCAATCACCGCATTCATGGATCATATCAGAGGGTGGCTCCAAGCAAAATACTACAAACGCAGGAATAAGCACTCCAGTAACCCGAGCCAGTGGTCGAAGTTTGCTACAGAAATCTTGGAAAAAGCAGAGGAGAAGGCAAGGAGGCACGTGGTCAAACCTATTGCTCGATATGAGTTTCAGGTCGAGGATGGACATTTGGGTGGACGTGTCAACCTTCACGCTAGAACGTGCACCTGTCGTGAATTTGAGTATTACGAACTTCCATGCTCCCATGCGATCGCTGCATGCACTTATCGACATATCGAATATCATACTCTTTGTTCCAAAGTCTACCATGTCGACTCTTTGATAGATTCATATGCACAACCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGATCACCTCAGTTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGGGTTGGTCGTCGTCAGACGTTGA

Coding sequence (CDS)

ATGACCACCAATCTTGCGGAGTGCACTAACTCAGTGTTGAAAGATGCACGAGAGCTCCCAATCACCGCATTCATGGATCATATCAGAGGGTGGCTCCAAGCAAAATACTACAAACGCAGGAATAAGCACTCCAGTAACCCGAGCCAGTGGTCGAAGTTTGCTACAGAAATCTTGGAAAAAGCAGAGGAGAAGGCAAGGAGGCACGTGGTCAAACCTATTGCTCGATATGAGTTTCAGGTCGAGGATGGACATTTGGGTGGACGTGTCAACCTTCACGCTAGAACGTGCACCTGTCGTGAATTTGAGTATTACGAACTTCCATGCTCCCATGCGATCGCTGCATGCACTTATCGACATATCGAATATCATACTCTTTGTTCCAAAGTCTACCATGTCGACTCTTTGATAGATTCATATGCACAACCATACAACCCCTTGGGCATGAGTCGGAGTGGAAGAGATCACCTCAGTTCGTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGGGTTGGTCGTCGTCAGACGTTGA

Protein sequence

MTTNLAECTNSVLKDARELPITAFMDHIRGWLQAKYYKRRNKHSSNPSQWSKFATEILEKAEEKARRHVVKPIARYEFQVEDGHLGGRVNLHARTCTCREFEYYELPCSHAIAACTYRHIEYHTLCSKVYHVDSLIDSYAQPYNPLGMSRSGRDHLSSSMWKSCLLEECLGLVVVRR

Homology

[Close]

BLAST of Lag0038534 vs. NCBI nr
Match: XP_022154803.1 (uncharacterized protein LOC111021969 [Momordica charantia])

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-33
Identity = 74/147 (50.34%), Postives = 102/147 (69.39%), Query Frame = 0


Query: 1   MTTNLAECTNSVLKDARELPITAFMDHIRGWLQAKYYKRRNKHSSNPSQWSKFATEILEK 60
           MT+NLAE  N+VL  AR+LPITA  ++ R  LQ  +Y RR   SS  +  +++A  IL++
Sbjct: 630 MTSNLAESMNAVLVHARDLPITALFENCRSLLQQWFYDRRTAGSSRGTFLTEYAENILKE 689

Query: 61  AEEKARRHVVKPIARYEFQVEDGHLGGRVNLHARTCTCREFEYYELPCSHAIAACTYRHI 120
             E+AR H V+PI R+EF+V DG    RVN++++TCTC++F YYE+PCSHAIA    R+I
Sbjct: 690 VAEQARYHHVRPIDRFEFEVHDGATKVRVNINSKTCTCKQFYYYEIPCSHAIAGAVLRNI 749

Query: 121 EYHTLCSKVYHVDSLIDSYAQPYNPLG 148
             HTLCS  Y +D+LI +Y +P  PLG
Sbjct: 750 SVHTLCSDRYRIDTLIQAYVEPVYPLG 776

[Close]

BLAST of Lag0038534 vs. NCBI nr
Match: XP_022154963.1 (uncharacterized protein LOC111022107 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 7.5e-33
Identity = 76/163 (46.63%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 1   MTTNLAECTNSVLKDARELPITAFMDHIRGWLQAKYYKRRNKHSSNPSQWSKFATEILEK 60
           MTTN+AE  N++ + AR+LP+T  +DHIRG LQ  +Y+RR   SS  S  S +A E++ +
Sbjct: 1   MTTNIAESVNALFRHARKLPVTVLLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIXE 60

Query: 61  AEEKARRHVVKPIARYEFQVEDGHLGGRVNLHARTCTCREFEYYELPCSHAIAACTYRHI 120
           A + AR H+V  I  + F+V DG+L G V+L ++TCTCREF+Y+++PCSHAIAA   R I
Sbjct: 61  ASDNARXHIVMNIDXFNFEVRDGNLNGDVDLQSQTCTCREFDYFKVPCSHAIAAANSRSI 120

Query: 121 EYHTLCSKVYHVDSLIDSYAQPYNPLGMSRSGRDHLSSSMWKS 164
             +TLC + Y V+S +   A+P  P+G         SSS WKS
Sbjct: 121 NPYTLCDEAYTVNSWMLGCAEPIFPVG---------SSSTWKS 154

[Close]

BLAST of Lag0038534 vs. NCBI nr
Match: XP_022147768.1 (uncharacterized protein LOC111016623 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-32
Identity = 69/147 (46.94%), Postives = 107/147 (72.79%), Query Frame = 0


Query: 1   MTTNLAECTNSVLKDARELPITAFMDHIRGWLQAKYYKRRNKHSSNPSQWSKFATEILEK 60
           MTTN+AE  N+VL  AR LP+TA +++ R  LQ  +Y+RR   ++  S  +++A +IL +
Sbjct: 277 MTTNIAESMNAVLVHARALPVTALLENCRVLLQRWFYERRTHAATITSCLTEYAEDILRQ 336

Query: 61  AEEKARRHVVKPIARYEFQVEDGHLGGRVNLHARTCTCREFEYYELPCSHAIAACTYRHI 120
           + E+ARRH ++PI  YEF+V DG    RVNL+++TC+C++F+YY++PCSHAIAA   +++
Sbjct: 337 SSEQARRHTIRPIDNYEFEVHDGSNKVRVNLNSKTCSCKQFDYYQIPCSHAIAAAVLQNV 396

Query: 121 EYHTLCSKVYHVDSLIDSYAQPYNPLG 148
             +TLCS  Y +++LI +YA+P  PLG
Sbjct: 397 NRYTLCSSKYKLETLITAYAEPIYPLG 423

[Close]

BLAST of Lag0038534 vs. NCBI nr
Match: XP_022154964.1 (protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia])

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-32
Identity = 79/181 (43.65%), Postives = 113/181 (62.43%), Query Frame = 0


Query: 1   MTTNLAECTNSVLKDARELPITAFMDHIRGWLQAKYYKRRNKHSS--------------- 60
           MTTN+AE  N++ + AR+LP+TA +DHIRG LQ  +Y+RR   SS               
Sbjct: 196 MTTNIAESVNALFRHARKLPVTALLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIAE 255

Query: 61  ---NPSQWSKFATEILEKAEEKARRHVVKPIARYEFQVEDGHLGGRVNLHARTCTCREFE 120
              N  + S +A E++ +A + ARRH+V  I ++ F+V DG+L G V+L ++TCTCREF+
Sbjct: 256 ASDNARRXSDYAEEMIAEASDNARRHIVMNIDQFNFEVRDGNLNGDVDLQSQTCTCREFD 315

Query: 121 YYELPCSHAIAACTYRHIEYHTLCSKVYHVDSLIDSYAQPYNPLGMSRSGRDHLSSSMWK 164
           Y+++PCSHAIAA   R I  +TLC + Y V+S + +YA+P  P+G         SSS WK
Sbjct: 316 YFKVPCSHAIAAACSRSINPYTLCDEAYTVNSWMLAYAEPIFPVG---------SSSTWK 367

[Close]

BLAST of Lag0038534 vs. NCBI nr
Match: XP_022145141.1 (uncharacterized protein LOC111014656 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-32
Identity = 75/163 (46.01%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 1   MTTNLAECTNSVLKDARELPITAFMDHIRGWLQAKYYKRRNKHSSNPSQWSKFATEILEK 60
           MTTN+ E  N++ + AR+LP+TA +DHIRG LQ  +Y+RR   SS  S  S +A E++ +
Sbjct: 1   MTTNIVESVNALFRHARKLPVTALLDHIRGVLQRWFYERRTLASSRQSTLSDYAEEMIAE 60

Query: 61  AEEKARRHVVKPIARYEFQVEDGHLGGRVNLHARTCTCREFEYYELPCSHAIAACTYRHI 120
           A + ARRH+V  I ++ F+V DG+L   V+L  +TCT REF+Y+++PCSHAIA  + R I
Sbjct: 61  ASDNARRHIVMNIDQFNFEVRDGNLNEDVDLQTQTCTYREFDYFKVPCSHAIAVASSRSI 120

Query: 121 EYHTLCSKVYHVDSLIDSYAQPYNPLGMSRSGRDHLSSSMWKS 164
             +TLC + Y V+S + +YA+P  P+G         SSS WKS
Sbjct: 121 NPYTLCDEAYTVNSWMLAYAEPIFPVG---------SSSTWKS 154

The following BLAST results are available for this feature:

BLAST of Lag0038534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154803.1	2.6e-33	50.34	uncharacterized protein LOC111021969 [Momordica charantia]	[more]
XP_022154963.1	7.5e-33	46.63	uncharacterized protein LOC111022107 [Momordica charantia]	[more]
XP_022147768.1	1.7e-32	46.94	uncharacterized protein LOC111016623 [Momordica charantia]	[more]
XP_022154964.1	2.2e-32	43.65	protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia]	[more]
XP_022145141.1	2.8e-32	46.01	uncharacterized protein LOC111014656 [Momordica charantia]	[more]

BLAST of Lag0038534 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 94..121 e-value: 3.6E-9 score: 46.5
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 89..117 e-value: 1.1E-8 score: 34.6
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 87..119 score: 9.804279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038534.1	Lag0038534.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0008270	zinc ion binding