Lag0038517 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038517
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111025268
Locationchr2: 19308463 .. 19311376 (-)
RNA-Seq ExpressionLag0038517
SyntenyLag0038517
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGGATTACAAAAGACCTCGCTATAGTGATGGAAGAAGGTGAGCATTTACACCAGTAAACAACCAAATTAACAATAACATCAAAAAATCTGTGGTAGGTTAGCTCCTTTTCTTGGAGAATCTTCCAATTTCTTTCTTGCCAAGTGCTCCAACAGAAATCTTAAATAAAATTGTCCCAGAGAGTTTTTTGTCATCTTTGATGAGATGTCCGCCAAGGGTGAAGTACAGCAGTTGTCTTGGGTCCTTTGTGAGGACCATTAACCACCTGGATAATGTTACGATTGGGTTCTAATCCATCGTGGATTTCACTAGTGATGGATTGTATAACTACCATAAGCTTTTCAATGGTGATTAACGATAAAGCGAAAGGGTTTTTCCATCCAAAGTGTGGGTTACGACATGGAGATCCGTTGTCCCCTTATTTCTTTTGTGTGCAAAAAATCTATCTAGCCTTCTAGTGCACAACAAAACAGGGAAATAAGCAAGATGTCAAACAACCTCAAGGTATCCAAGTATTTCACATTAGTTTTCTGCTTATAACAGTCTACTATTTTTGTGGTGCATCCATTCCAAAATTTATTCAATTAGAAGAATTTTGCACAATTGCAAAAAAGCCTCAGGTAAATGTGTGAATATTTCTAAATCTACAATCCTCTTTAGTCCAAATGTTTTGAAAGATGTGAAGACTAGTATAGGTCAACTGATGGATATGCAAGTGGTTTCTCACTTGGAAAAATATTTGGGCTTTCCTTCACGTTTCTCCAAAAACAAGCATAGAGAATTCAATTTTCTGAAGGAAAAGGTGCAGAAAGCTATAGTTGGTTGGGAGGGAGAGTTTATTCCAATTGGGGGAAAGGAGACTCCTATGAAGGCGATTGCTCAATCCATTCCAACATATGTGATGTCTTGTGTTAGACTTCCAAAATCCTTTTGTGTGAACTTGACTAAAGATTTTGGTGGGGTTCCTCGAAAATAAGTTGAAGATCCATTGGATGAGATGGGAGAAATTATGTATCCCAAGGGAGAATGGGGTTTTGGTTTTAGAAGTCTTGAAGGCTTTAACCAATCTATTATTGTTTAATAGGTTTGGAGACTATTATAACACCCTTCAAGGCTGAGAAGCTTCAACAAGCATTTCTTATTCACATACAAAATTCGATATGTTCAACTCAACCTCCATTTCATATGCTGCAAATTAGTCCAAGCGAGGACAATGCTGTAAAGGTCAACATTTGCAAGATTGACGTTGCATCAACCTTTACTCCTTTGTTATTTTAAGTCATCAACGTTTGCTTGTAATTTTTGAACTTTTGGACTTCCAAAATATGGTTTCAAAGTTAAAATTCAATTGTGGGGAGTTACTAAGTAGGTCAATTATGGTCATTAATACTTTGTAGGTTTTATTTTGAGAACGGAAGGATCGGAGGTTTCATTCACATAAAGGCTAAAAAAAGCCACATCCAAGCCATGTAAAATTCAGATTTTGATGAATGAAATTTGATCTCTCAAGTTAGAGACTTTTTCTTAGAAACCCCTTTTCCAGTTCTAAGATTTCTTGCAATTCTTGTGATAGATTGCATTTTGATCCATTCAATCCAGCCTTGATCACGTTTGATTGTGAAATGACTCAATCTAGAACAAGATTTCCAATTTTGCTTCTAGATCTTTGATCATAAGAGGTAATCAATTTCTAGCCTTTTCTCTTGGTTGATTCTAATTTGTTTAAGGTGGTGTTAATTTCTTTGATTCAAGGGTTCTTGCTCCACAAAAGCTTGGATCTTTGGGCTGAGAATTAGGATTGTCTTATCAAGAACTACTACAATGGGGGCTGAGAGAATGGATTGGTAATGGGGAGGATACCCTTTGTCTTTAATTCCCATGGCTGCCAAGAGAAACCTCCTTAAGAATCATAACCCACCCACAACAGATAGGAAGAGAAATGAAAGTGTCTGAGCTAATTGACGAAAGCGGAAACTGGAACGGCTTGAAACTTAAAAGAGTTTTACTAGAGGAGAACTATGAAATAGTGCAAACCATCCCAATTTGCAAAATTAAAACTCAAGACCTTTAAACTTGGCATTATACGAGTGGTGGATTTTTTTCTACAAAGAGTGCCAATAACCTTTATGTAAATCACATGAAAGAGTCATCCACCACGAATAATAGAAGAAAAGAGAGATGGTAGAAAGTGTTGTAGGGATTAAAAATTCCCAATAACATCAAAATCTTTGTATGGCAGCTATTCCATAATCCCTTGCCCACCAACTACAACCTATGTATCAAAAAAATACAAGTTCATCCATGGGGTATGTCTGTGAAGAGATAGGAATCAGTGGAACATACGTTCTTCAGGTGTAAATGGGCGAGACAAATTTGGGCCCTCATTAACCCAACTATCTATAACCTTCAGGTTGATCGACGACACATACCAAACATTCTAGTAAGTTTTTTTTAGTCGATGACACACCTAGAACTAGAGATACTTTGCATCAGTTGTTGGACAATTTGGTCAGGTGGAAACCAAATCTCGCTAAAGAAGCCCATTCCTGAGGTGGGAGTCGGGGTTGGGTGGATCAATTGCTACCATTGAGAACATCAATTGAGTAACCCATCCCCTTGGGATCGAGGTGAAAGGGGATGGAGAAAAACATGATGGAACGCTAGACTCCACTGTTGATGAACCAACATAAACTAAATGTGGATGCTTCTTGTCATCCAAATCAAAGCAAAAACAGTCTAAGGGCGGTAATTAGGAATTATTAGGGGAATCTAATGGTGGCAACATCTGAATTCCTAAACTGTAGGGTAGGCATCTTATCAATTGAAGCCTTGGCAATGCTTCACAGCTTAATGCTGACAACACAACACGGATACCACAACCTCTGGATTGAATTTGATTCTGTTGGTTAA

mRNA sequence

ATGAGAAGGATTACAAAAGACCTCGCTATAGTGATGGAAGAAGGTTTGGAGACTATTATAACACCCTTCAAGGCTGAGAAGCTTCAACAAGCATTTCTTATTCACATACAAAATTCGATATGTTCAACTCAACCTCCATTTCATATGCTGCAAATTAGTCCAAGCGAGGACAATGCTGTAAAGGGTTCTTGCTCCACAAAAGCTTGGATCTTTGGGCTGAGAATTAGGATTGTCTTATCAAGAACTACTACAATGGGGGCTGAGAGAATGGATTGGGTAGGCATCTTATCAATTGAAGCCTTGGCAATGCTTCACAGCTTAATGCTGACAACACAACACGGATACCACAACCTCTGGATTGAATTTGATTCTGTTGGTTAA

Coding sequence (CDS)

ATGAGAAGGATTACAAAAGACCTCGCTATAGTGATGGAAGAAGGTTTGGAGACTATTATAACACCCTTCAAGGCTGAGAAGCTTCAACAAGCATTTCTTATTCACATACAAAATTCGATATGTTCAACTCAACCTCCATTTCATATGCTGCAAATTAGTCCAAGCGAGGACAATGCTGTAAAGGGTTCTTGCTCCACAAAAGCTTGGATCTTTGGGCTGAGAATTAGGATTGTCTTATCAAGAACTACTACAATGGGGGCTGAGAGAATGGATTGGGTAGGCATCTTATCAATTGAAGCCTTGGCAATGCTTCACAGCTTAATGCTGACAACACAACACGGATACCACAACCTCTGGATTGAATTTGATTCTGTTGGTTAA

Protein sequence

MRRITKDLAIVMEEGLETIITPFKAEKLQQAFLIHIQNSICSTQPPFHMLQISPSEDNAVKGSCSTKAWIFGLRIRIVLSRTTTMGAERMDWVGILSIEALAMLHSLMLTTQHGYHNLWIEFDSVG
Homology
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BLAST of Lag0038517 vs. NCBI nr
Match: XP_022158803.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 20   ITPFKAEKLQQAFLIHIQNSICSTQPPFHMLQISPSEDNAVK 62
            IT  KA+KLQQAFLIH+QN I S QP F MLQ +PSED+ VK
Sbjct: 1054 ITRAKAKKLQQAFLIHVQNWIGSVQPLFQMLQNNPSEDDVVK 1095

The following BLAST results are available for this feature:
BLAST of Lag0038517 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158803.11.0e-0469.05LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia][more]
BLAST of Lag0038517 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038517.1Lag0038517.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding