Lag0038439 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038439
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr2: 17513483 .. 17513923 (-)
RNA-Seq ExpressionLag0038439
SyntenyLag0038439
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGGCACCATCTAATGATCAATTAAATGCGGCTGTCCGAGAGGTTGCCATCGAGGGGGCTCAGTGGAGATTGTCGAAGACAGAGAAGCGCACGTTCCAGGCCGCTTATCTGAAGAGTGAAGCCAATACATGGATGGGCTTCATCAAGCTGCGCTTGCTGCCGACAACTCACGAGGCAACGGTGTCTCGGGACCGGGTAATGCTTGCCTTTGCTATTCTTCGTTCAATGAGTATTGATGTGGGTAAAATAAATTCTTCTGAGATTTATGATTGCTGGCGGAAACATGTTGGGAAGTTGTTTTTCCCCAACACTATCACGTTGCTATGCCGAAGGGCAGGGGTGCCAGAGAGTGAGGATGATGTGACTTTAATGGACAAGGGAATAACTGATGTGCAATTTGCTAACCGCAAGTGTACGGGTCAAGTAATAATATAG

mRNA sequence

ATGGTGGTGGCACCATCTAATGATCAATTAAATGCGGCTGTCCGAGAGGTTGCCATCGAGGGGGCTCAGTGGAGATTGTCGAAGACAGAGAAGCGCACGTTCCAGGCCGCTTATCTGAAGAGTGAAGCCAATACATGGATGGGCTTCATCAAGCTGCGCTTGCTGCCGACAACTCACGAGGCAACGGTGTCTCGGGACCGGGTAATGCTTGCCTTTGCTATTCTTCGTTCAATGAGTATTGATGTGGGTAAAATAAATTCTTCTGAGATTTATGATTGCTGGCGGAAACATGTTGGGAAGTTGTTTTTCCCCAACACTATCACGTTGCTATGCCGAAGGGCAGGGGTGCCAGAGAGTGAGGATGATGTGACTTTAATGGACAAGGGAATAACTGATGTGCAATTTGCTAACCGCAAGTGTACGGGTCAAGTAATAATATAG

Coding sequence (CDS)

ATGGTGGTGGCACCATCTAATGATCAATTAAATGCGGCTGTCCGAGAGGTTGCCATCGAGGGGGCTCAGTGGAGATTGTCGAAGACAGAGAAGCGCACGTTCCAGGCCGCTTATCTGAAGAGTGAAGCCAATACATGGATGGGCTTCATCAAGCTGCGCTTGCTGCCGACAACTCACGAGGCAACGGTGTCTCGGGACCGGGTAATGCTTGCCTTTGCTATTCTTCGTTCAATGAGTATTGATGTGGGTAAAATAAATTCTTCTGAGATTTATGATTGCTGGCGGAAACATGTTGGGAAGTTGTTTTTCCCCAACACTATCACGTTGCTATGCCGAAGGGCAGGGGTGCCAGAGAGTGAGGATGATGTGACTTTAATGGACAAGGGAATAACTGATGTGCAATTTGCTAACCGCAAGTGTACGGGTCAAGTAATAATATAG

Protein sequence

MVVAPSNDQLNAAVREVAIEGAQWRLSKTEKRTFQAAYLKSEANTWMGFIKLRLLPTTHEATVSRDRVMLAFAILRSMSIDVGKINSSEIYDCWRKHVGKLFFPNTITLLCRRAGVPESEDDVTLMDKGITDVQFANRKCTGQVII
Homology
BLAST of Lag0038439 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 0

Query: 6   SNDQLNAAVREVAIEGAQWRLSKTEKRTFQAAYLKSEANTWMGFIKLRLLPTTHEATVSR 65
           +   L   +  VA  GA+W +S     T   + L   A  W  F+K RLLPTTH  TVS+
Sbjct: 137 TQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSK 196

Query: 66  DRVMLAFAILRSMSIDVGKINSSEIYDCWRKHVGKLFFPNTITLLCRRAGVPESEDDVTL 125
           DR++L  ++L   SI+VG++  SEI  C  +  G LFFP+ IT LCR A  P   ++  L
Sbjct: 197 DRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKL 256

Query: 126 MDKGITD 133
            + G  D
Sbjct: 257 HNTGEID 263

BLAST of Lag0038439 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 48/141 (34.04%), Postives = 78/141 (55.32%), Query Frame = 0

Query: 6   SNDQLNAAVREVAIEGAQWRLSKTEKRTFQAAYLKSEANTWMGFIKLRLLPTTHEATVSR 65
           +++QL   + EVAIEGA W++S     T     LK  A  W  F+  R +P+TH  TV++
Sbjct: 81  TDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAK 140

Query: 66  DRVMLAFAILRSMSIDVGKINSSEIYDC-WRKHVGKLFFPNTITLLCRRAGVPESEDDVT 125
           DRV+L ++IL  +S+++ +I   EI  C   +  G L+FP+ IT L  +A VP  +D+  
Sbjct: 141 DRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAI 200

Query: 126 LMDKGITDVQFANRKCTGQVI 146
           + + G       +R   G+ +
Sbjct: 201 VHNAGAISTLSISRISQGRAV 221

BLAST of Lag0038439 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 43/114 (37.72%), Postives = 71/114 (62.28%), Query Frame = 0

Query: 15  REVAIEGAQWRL-SKTEKRTFQAAYLKSEANTWMGFIKLRLLPTTHEATVSRDRVMLAFA 74
           RE+   G +W   S    RT++A+ LK  AN W+ FI+  L PTTH++++S ++++L + 
Sbjct: 308 RELGKAGIRWDAHSNYMLRTYRASNLKPNANVWINFIRYSLNPTTHDSSISVEKIILLYC 367

Query: 75  ILRSMSIDVGKINSSEIYDCWRKHVGKLFFPNTITLLCRRAGVPESEDDVTLMD 128
           ++   +I+VGK+    I  C ++  GKLFFP+ I  L  +AGVPE  DD+ + +
Sbjct: 368 VVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAGVPEYTDDLVIKE 421

BLAST of Lag0038439 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-14
Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 0

Query: 10  LNAAVREVAIEGAQWRLSKTEKRTFQAAYLKSEANTWMGFIKLRLLPTTHEATVSRDRVM 69
           L   +  VA+ GA+W +S     T   + L   A  W  F+K  LLPTTH  TVS+DR++
Sbjct: 132 LITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRML 191

Query: 70  LAFAILRSMSIDVGKINSSEIYDCWRKHVGKLFFPNTITLLCRRAGVPESEDDVTLMDKG 129
           L  ++L   SI+VG++  SEI  C  +  G LFFP+ IT LCR A  P   ++  L + G
Sbjct: 192 LLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHNTG 251

Query: 130 ITD 133
             D
Sbjct: 252 EID 254

BLAST of Lag0038439 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-13
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 0

Query: 2   VVAPSNDQLNAAVREVAIEGAQWRLSKTEKRTFQAAYLKSEANTWMGFIKLRLLPTTHEA 61
           V A +  +L   +  VAI GA+W +S     T   + L   A  W  F+K RLLPTTH  
Sbjct: 40  VEAITEPELATVLETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGK 99

Query: 62  TVSRDRVMLAFAILRSMSIDVGKINSSEIYDCWRKHVGKLFFPNTITLLCRRAGVPESED 121
           TVS++RV+L +++L   SI+VG+I   EI     +  G LFFP+ IT +C  A  P   +
Sbjct: 100 TVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGALFFPSLITRMCCNARAPYLVN 159

Query: 122 DVTLMDKGITD 133
           +  L + G  D
Sbjct: 160 EEKLHNTGEID 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON46472.11.3e-1439.37hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
EXB53755.11.3e-1434.04hypothetical protein L484_022412 [Morus notabilis][more]
XP_024971944.11.3e-1437.72uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
PON35554.12.2e-1439.84hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
PON62892.11.1e-1338.17hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038439.1Lag0038439.1mRNA