Lag0038426 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038426
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr2: 17156253 .. 17156612 (-)
RNA-Seq ExpressionLag0038426
SyntenyLag0038426
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAGCGTCAATTTCTCCGGTAATTCAGCTCTTTCTTCCGGTAACAATCTCAGCAGTCCACTGTTAAATCAACTGTTGAACCAGATCACCTCCATAAAACTCGATAGAGGTAATTTTCTTCTTTGGAAAAACTTGGCACTACCGAGTCTTCAAAGTTATCGACTGGAAGGGCATTTAACTGGACTGAAACCTTGCCCTCCCAAGCATGTTCGAGTTGCTGTAGCTGATCCTTCTCCGTCGTCGGGAGCTGGAGGAGTGAGCTCGAGAGCAGAGGCAAGTGAAGCGTCTGCAACAGTCACTGCTGATGACATTAACCCATCATATGAAGCATGGGTAGCATTGACCAGTTGTTGTTAG

mRNA sequence

ATGACCAGCGTCAATTTCTCCGGTAATTCAGCTCTTTCTTCCGGTAACAATCTCAGCAGTCCACTGTTAAATCAACTGTTGAACCAGATCACCTCCATAAAACTCGATAGAGGTAATTTTCTTCTTTGGAAAAACTTGGCACTACCGAGTCTTCAAAGTTATCGACTGGAAGGGCATTTAACTGGACTGAAACCTTGCCCTCCCAAGCATGTTCGAGTTGCTGTAGCTGATCCTTCTCCGTCGTCGGGAGCTGGAGGAGTGAGCTCGAGAGCAGAGGCAAGTGAAGCGTCTGCAACAGTCACTGCTGATGACATTAACCCATCATATGAAGCATGGGTAGCATTGACCAGTTGTTGTTAG

Coding sequence (CDS)

ATGACCAGCGTCAATTTCTCCGGTAATTCAGCTCTTTCTTCCGGTAACAATCTCAGCAGTCCACTGTTAAATCAACTGTTGAACCAGATCACCTCCATAAAACTCGATAGAGGTAATTTTCTTCTTTGGAAAAACTTGGCACTACCGAGTCTTCAAAGTTATCGACTGGAAGGGCATTTAACTGGACTGAAACCTTGCCCTCCCAAGCATGTTCGAGTTGCTGTAGCTGATCCTTCTCCGTCGTCGGGAGCTGGAGGAGTGAGCTCGAGAGCAGAGGCAAGTGAAGCGTCTGCAACAGTCACTGCTGATGACATTAACCCATCATATGAAGCATGGGTAGCATTGACCAGTTGTTGTTAG

Protein sequence

MTSVNFSGNSALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWVALTSCC
Homology
BLAST of Lag0038426 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 0

Query: 11  ALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKH 70
           A+ SG   +SP LNQLLNQITSIK+DRGNFLLW+NLALP L+SY+L  +LTG KPCPP H
Sbjct: 15  AVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTH 74

Query: 71  VRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWVAL 116
           +   V   +P++  G  SS++  +          +NP+YEAW+ +
Sbjct: 75  L---VPTDTPTNIEGSTSSQSSPT----------LNPTYEAWIVV 106

BLAST of Lag0038426 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0

Query: 17  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVA 76
           N S+P LNQLLNQ++S+KLDRGN+LLWK LALP ++SY+ EGHLTG  PCPPK +   + 
Sbjct: 14  NFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQIG 73

Query: 77  DPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV 114
           +          ++   +S ++AT T   +NP ++ W+
Sbjct: 74  ESQSEIDGTAEATDGASSRSTATKT---VNPKFDQWL 107

BLAST of Lag0038426 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0

Query: 17  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVA 76
           N S+P LNQLLNQ++S+KLDRGN+LLWK LALP ++SY+ EGHLTG  PCPPK +   + 
Sbjct: 14  NFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQIG 73

Query: 77  DPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV 114
           +          ++   +S ++AT T   +NP ++ W+
Sbjct: 74  ESQSEIDGTAEATDGASSRSTATKT---VNPKFDQWL 107

BLAST of Lag0038426 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-14
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 0

Query: 13  SSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVR 72
           SS  N S+P LNQLLNQ++S+KLDR N+LLWK LALP ++SY+ EG+LTG  PCPPK + 
Sbjct: 10  SSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKFIT 69

Query: 73  VAVADPSPSSGAGGVSSRAEASE--ASATVTADDINPSYEAWV 114
              A+         +   AEA++  +S ++    +NP ++ W+
Sbjct: 70  NQTAESQSE-----IDGTAEATDGASSRSIATKTVNPKFDQWL 107

BLAST of Lag0038426 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-14
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 0

Query: 17  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVA 76
           + ++PLLNQ+LNQ+T+IKLDRGN+LLWK LALP L+SY+L  HL G  PC PK + +   
Sbjct: 16  SFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQ 75

Query: 77  DPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV 114
                    G  S+  +S ++A VT   +NP YE W+
Sbjct: 76  PNESIVENAGEPSQETSSSSTAVVT---VNPKYERWI 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151683.11.1e-1651.43uncharacterized protein LOC111019598 [Momordica charantia][more]
KAA0060627.11.6e-1546.39Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa][more]
TYK02246.11.6e-1546.39uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa][more]
XP_016901223.11.8e-1444.66PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo][more]
KAA0067279.14.0e-1447.42uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038426.1Lag0038426.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process