Lag0038415 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038415
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr2: 16934621 .. 16936949 (+)
RNA-Seq Expression	Lag0038415
Synteny	Lag0038415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTTTCATGCTCAGCCTTGTGTCGCCTGGGGAACTGCCTCCCTTCGGAAGGTTTGTTGCATGGAATCGATATCAAGGCAAACTTCAGAAATGCGAAGAGTGCAGTTGTGAGTCTTTAGTAGAGTGACCCACAGTTAATGAAGGTTGATTAATTTGATTAATGAGTTTAATCAATTAATCTCAAATCATTGGAGTTTCTAATTTGTAGGTCTATTAGGTCCCCTTGCTAGCTCATTGTAAAGAAGCCCATTAAGCAGCCCATTTTTTAATATTTACTTTGTATCTGGTGTGTTCTATTTCTTGTATGAGGCCTATTTTGTATTAGCTCATTTATTTTTAGGGTTGTTTTATGCCCTTTTATTCTCTTCTTATTCAACAATTAGGGCAAGATGAATATTCCAGAGAGAGAGCTTGATTTCTGTTTTTTGTAGGAGTTTTTCTCCCCAAGCCTATATATATGGTTGATTGCCTTAATCAAATATATATATAAGCAAAGGTTTTTCTCCTGCAATCTACCATGGCTTATTCTTCTTGTTTATGCCTTTATATTTCTGTTTAGATGGTATCAGAGCCTTGTCTAACGATTTAGCTCCTTTTTTTTCGACTTTTCAGCCCTTCATGGCAACACCCGAGAGCTCTCTGACTGGTGCAACAGTTGATTCTTCAAATGTTTCATCTCAGATCTTCAACCCTGGTAACAAATTTTTCTATCGTAAAACTCACCGACGATAATTTTCTTCTTAGGAAATTTCAGATTCAAATAGCCCTAGAAGGTTATGATCTTGAATCACATCTTCATGATGATCCACTAGATAAATATCTTGCAGTTCAACCATCTGATGCTTCATCTTCTGATAGTCCGGCTACAAAACAAAAACCCAGAACCATGCGTATCTGTCGTGGAAACGACAAGATAATATTATCTCTTCATGGCTTGTGGGCTCCATGTCTGACGAGATTCTTCAGCAAATGTTGAACTGTACGACCGCCAAAGAGATATGGACCTGCTTAAATCAGATCTTCACTACTCGCAACTTGGCCCAGATGATGAAGATAAAAACTAAATTACAGACAATTCAAAAGGTTGGTATGTCTTTACAAGAGTACTTCTCCAAAATTCAACAATATGTTGACGCCTTGGCTGCGGTGGGTAAGCTTGTAGAGGTTGAAGATCACATACTTTTTATTTTGTCTGATCTCGGGTCTGAGTATGAGTCGATGGTCTCTATCATTTTGGCCAAAGTTGGTCCTCAATCGGTCCATGAGGTGATGGTCATGCTTCTCACCCAAGAGAACTGGATTGGGAGCAAGTTTGCTCATACATAGGGTTTTGTTCCTTCGATCAATCTAATGGTTAAATCTTCTGAAAATGATTCTTCTAAAACTATCTCCTCAGTTTTCTCAGAGTCCTGAACATGGTAATAGAGGTGGTCGTGGTGGTCGTTCTGGTTTTGGCTCTAATCGTAGTGGTCGCTAATGGGGCCCAGACTTGTCGAAGGTCCGTATCAAAACGAATTTATAGTCCACGATCACTAAACTACTTGCAGTAGTGGTGGTTGGGATCGATCACAGGGAACAACTGGCTTACTTCTAATCTCTTTTGTGTTTGTGTAACAAAAGAGGGATTGAAGGGAAAATAAAATTGCGAGGAAATAAATGGCAGGAATTAAAATGACAGAAGAGTAAATGGGAGGTTGCCTAATCTCACCTTGCCGATCACTATAGTTGAGGACTGATAGCTCTTAGAAATAAGAGCTATTGGTTCTCTTTAGGCTTAAAAACTCTACTTTTAATGTGTTTGAGCTTTGGTTTGTGCATGAAAATGAGTATTCTTTGATGCATATCTTAACATATCAGTAGGTCAAGCTCAATTTGAATTGATGTAGATTTTGTATGTTTCAAGCTAATTTTATGGTGTATGAACACTCAGGTTGTGCTACAGCAACTGATTTCACAAGCAGAAGGCAAAAAGTCTCGAATTTAAGTGACTGCACGTGTTGTACCAGTGTGAATTTTCATTAATTGAGCTGGCAACCATGTGGAGCTGATTTGTACCATTTTAGCCAATTAGGGAAGATCCATGTGGAAGCATATGTCCAATCAGCCCTGAATTCAATGCTAGGAGCTGATATAAATAGTTCTTTGGCCCAAAATGAGAGGACATTCAGCTGGAGAAGTTGGCCTAGAAGTTGCTGCTAACGGTGAAGGGGAAACGACAAGGAGGCTGCTGTTTGGAGGATTTCCAACTTGGGAAAGCTGGAATCTCCCTTGGAAGCTTCTTCTCTTCTCTTCCCTTCTTTTATTCTTCTTTCTTCTAGTGTTTAG

mRNA sequence

ATGAGACTTTCATGCTCAGCCTTGTGTCGCCTGGGGAACTGCCTCCCTTCGGAAGGTTTGTTGCATGGAATCGATATCAAGGCAAACTTCAGAAATGCGAAGAGTGCAGTTCCCTTCATGGCAACACCCGAGAGCTCTCTGACTGGTGCAACAGTTGATTCTTCAAATGTTTCATCTCAGATCTTCAACCCTGATAATATTATCTCTTCATGGCTTGTGGGCTCCATGTCTGACGAGATTCTTCAGCAAATGTTGAACTGTACGACCGCCAAAGAGATATGGACCTGCTTAAATCAGATCTTCACTACTCGCAACTTGGCCCAGATGATGAAGATAAAAACTAAATTACAGACAATTCAAAAGGTTGGTATGTCTTTACAAGAGTACTTCTCCAAAATTCAACAATATGTTGACGCCTTGGCTGCGGTGGGTAAGCTTGTAGAGGTTGAAGATCACATACTTTTTATTTTGTCTGATCTCGGGTCTGAGTATGAGTCGATGGTCTCTATCATTTTGGCCAAAGTTGGTCCTCAATCGGTCCATGAGGTGATGGTCATGCTTCTCACCCAAGAGAACTGGATTGGGAGCAATTTTCTCAGAGTCCTGAACATGGTAATAGAGGTGGTCGTGGTGGTCGTTCTGGTTTTGGCTCTAATCGTAGTGGTCGCTAATGGGGCCCAGACTTGTCGAAGGGGAAACGACAAGGAGGCTGCTGTTTGGAGGATTTCCAACTTGGGAAAGCTGGAATCTCCCTTGGAAGCTTCTTCTCTTCTCTTCCCTTCTTTTATTCTTCTTTCTTCTAGTGTTTAG

Coding sequence (CDS)

ATGAGACTTTCATGCTCAGCCTTGTGTCGCCTGGGGAACTGCCTCCCTTCGGAAGGTTTGTTGCATGGAATCGATATCAAGGCAAACTTCAGAAATGCGAAGAGTGCAGTTCCCTTCATGGCAACACCCGAGAGCTCTCTGACTGGTGCAACAGTTGATTCTTCAAATGTTTCATCTCAGATCTTCAACCCTGATAATATTATCTCTTCATGGCTTGTGGGCTCCATGTCTGACGAGATTCTTCAGCAAATGTTGAACTGTACGACCGCCAAAGAGATATGGACCTGCTTAAATCAGATCTTCACTACTCGCAACTTGGCCCAGATGATGAAGATAAAAACTAAATTACAGACAATTCAAAAGGTTGGTATGTCTTTACAAGAGTACTTCTCCAAAATTCAACAATATGTTGACGCCTTGGCTGCGGTGGGTAAGCTTGTAGAGGTTGAAGATCACATACTTTTTATTTTGTCTGATCTCGGGTCTGAGTATGAGTCGATGGTCTCTATCATTTTGGCCAAAGTTGGTCCTCAATCGGTCCATGAGGTGATGGTCATGCTTCTCACCCAAGAGAACTGGATTGGGAGCAATTTTCTCAGAGTCCTGAACATGGTAATAGAGGTGGTCGTGGTGGTCGTTCTGGTTTTGGCTCTAATCGTAGTGGTCGCTAATGGGGCCCAGACTTGTCGAAGGGGAAACGACAAGGAGGCTGCTGTTTGGAGGATTTCCAACTTGGGAAAGCTGGAATCTCCCTTGGAAGCTTCTTCTCTTCTCTTCCCTTCTTTTATTCTTCTTTCTTCTAGTGTTTAG

Protein sequence

MRLSCSALCRLGNCLPSEGLLHGIDIKANFRNAKSAVPFMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGSNFLRVLNMVIEVVVVVVLVLALIVVVANGAQTCRRGNDKEAAVWRISNLGKLESPLEASSLLFPSFILLSSSV

Homology

[Close]

BLAST of Lag0038415 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 8.1e-31
Identity = 84/166 (50.60%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 29  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLN 88
           NF  ++S  P  ++ + ESS   AT   +         D +ISSWL+GSMS+EIL QML+
Sbjct: 57  NFLESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLH 116

Query: 89  CTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKL 148
           C +AKEIW  L  IF++R LAQ M+ K KL  I+K  M L+EYF KI Q VDALA++ K 
Sbjct: 117 CKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKP 176

Query: 149 VEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN 193
           V  +DHIL+IL+ LGS+Y+SM+S+I A+    SV EVM +LLTQE+
Sbjct: 177 VSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQES 222

[Close]

BLAST of Lag0038415 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 8.1e-31
Identity = 84/166 (50.60%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 29  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLN 88
           NF  ++S  P  ++ + ESS   AT   +         D +ISSWL+GSMS+EIL QML+
Sbjct: 57  NFLESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLH 116

Query: 89  CTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKL 148
           C +AKEIW  L  IF++R LAQ M+ K KL  I+K  M L+EYF KI Q VDALA++ K 
Sbjct: 117 CKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKP 176

Query: 149 VEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN 193
           V  +DHIL+IL+ LGS+Y+SM+S+I A+    SV EVM +LLTQE+
Sbjct: 177 VSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQES 222

[Close]

BLAST of Lag0038415 vs. NCBI nr
Match: KAA0045111.1 (putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK23627.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 6.9e-30
Identity = 83/174 (47.70%), Postives = 117/174 (67.24%), Query Frame = 0


Query: 32  NAKSAVPFM-ATPESSLTGATVDSSNVSSQIFNP--------DNIISSWLVGSMSDEILQ 91
           NA+  + ++  TP  SL  A   SS     I NP        D +ISSWL+GSM ++IL 
Sbjct: 189 NAEPPIKYINQTPHQSLVAAG-SSSAPPESILNPEYKVWKRQDRLISSWLLGSMGEDILN 248

Query: 92  QMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAA 151
           QML+CT+AK+IW  L  I+++R LA+ M+ K KL  ++K  +SL+EYF KIQQ VDALA+
Sbjct: 249 QMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALAS 308

Query: 152 VGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS 197
           + K +  +DHIL+IL+ LG+EY+SM+S+I A+    SV +VM +LLTQE+ I S
Sbjct: 309 INKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIES 361

[Close]

BLAST of Lag0038415 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 7.6e-29
Identity = 80/158 (50.63%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 43  PESSLTGATVDSSNVSSQIFNPD--------NIISSWLVGSMSDEILQQMLNCTTAKEIW 102
           P S    +T  SS  +++  NP+         +IS WL+GSMS+EIL QM++C +AKEIW
Sbjct: 60  PPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIW 119

Query: 103 TCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKLVEVEDHIL 162
             L  IF++R LAQ M+ K KL  I+K  MSL+EYF KIQQ VDALA++ K V  +DHIL
Sbjct: 120 GTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHIL 179

Query: 163 FILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN 193
           +IL  LG +Y+SM+SII A+    S+ EVM +LLTQE+
Sbjct: 180 YILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQES 217

[Close]

BLAST of Lag0038415 vs. NCBI nr
Match: KAA0046195.1 (putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-27
Identity = 78/172 (45.35%), Postives = 113/172 (65.70%), Query Frame = 0


Query: 33  AKSAVPFMATPESSLTGATVDSSNVSSQIFN--------PDNIISSWLVGSMSDEILQQM 92
           A+ A  ++  P +  + A   SS     + N         D +ISSWL+GSMS++IL QM
Sbjct: 31  AEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQM 90

Query: 93  LNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVG 152
           L+ T+AK+IW  L  I+++R LA+ M+ K KL  ++K  MSL+EYF KIQQ VDALA++ 
Sbjct: 91  LHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASIN 150

Query: 153 KLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS 197
           K +  +DHIL+IL+ LG+EY+S++SII A+    SV + M +LLTQE+ I S
Sbjct: 151 KPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIES 202

[Close]

BLAST of Lag0038415 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 34/130 (26.15%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 65  DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGM 124
           D +I S ++G++S  +   +   TTA +IW  L +I+   +   + +++T+L+   K   
Sbjct: 81  DKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTK 140

Query: 125 SLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVM 184
           ++ +Y   +    D LA +GK ++ ++ +  +L +L  EY+ ++  I AK  P ++ E+ 
Sbjct: 141 TIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIH 200

Query: 185 VMLLTQENWI 195
             LL  E+ I
Sbjct: 201 ERLLNHESKI 210

[Close]

BLAST of Lag0038415 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.9e-31
Identity = 84/166 (50.60%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 29  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLN 88
           NF  ++S  P  ++ + ESS   AT   +         D +ISSWL+GSMS+EIL QML+
Sbjct: 57  NFLESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLH 116

Query: 89  CTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKL 148
           C +AKEIW  L  IF++R LAQ M+ K KL  I+K  M L+EYF KI Q VDALA++ K 
Sbjct: 117 CKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKP 176

Query: 149 VEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN 193
           V  +DHIL+IL+ LGS+Y+SM+S+I A+    SV EVM +LLTQE+
Sbjct: 177 VSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQES 222

[Close]

BLAST of Lag0038415 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.9e-31
Identity = 84/166 (50.60%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 29  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLN 88
           NF  ++S  P  ++ + ESS   AT   +         D +ISSWL+GSMS+EIL QML+
Sbjct: 57  NFLESESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLH 116

Query: 89  CTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKL 148
           C +AKEIW  L  IF++R LAQ M+ K KL  I+K  M L+EYF KI Q VDALA++ K 
Sbjct: 117 CKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKP 176

Query: 149 VEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN 193
           V  +DHIL+IL+ LGS+Y+SM+S+I A+    SV EVM +LLTQE+
Sbjct: 177 VSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQES 222

[Close]

BLAST of Lag0038415 vs. ExPASy TrEMBL
Match: A0A5A7TUB3 (Putative glutathione S-transferase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001440 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.3e-30
Identity = 83/174 (47.70%), Postives = 117/174 (67.24%), Query Frame = 0


Query: 32  NAKSAVPFM-ATPESSLTGATVDSSNVSSQIFNP--------DNIISSWLVGSMSDEILQ 91
           NA+  + ++  TP  SL  A   SS     I NP        D +ISSWL+GSM ++IL 
Sbjct: 189 NAEPPIKYINQTPHQSLVAAG-SSSAPPESILNPEYKVWKRQDRLISSWLLGSMGEDILN 248

Query: 92  QMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAA 151
           QML+CT+AK+IW  L  I+++R LA+ M+ K KL  ++K  +SL+EYF KIQQ VDALA+
Sbjct: 249 QMLHCTSAKQIWQTLQGIYSSRYLAKAMQFKNKLHNMKKGVISLKEYFLKIQQCVDALAS 308

Query: 152 VGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS 197
           + K +  +DHIL+IL+ LG+EY+SM+S+I A+    SV +VM +LLTQE+ I S
Sbjct: 309 INKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIES 361

[Close]

BLAST of Lag0038415 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-29
Identity = 80/158 (50.63%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 43  PESSLTGATVDSSNVSSQIFNPD--------NIISSWLVGSMSDEILQQMLNCTTAKEIW 102
           P S    +T  SS  +++  NP+         +IS WL+GSMS+EIL QM++C +AKEIW
Sbjct: 60  PPSKYLTSTGSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIW 119

Query: 103 TCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKLVEVEDHIL 162
             L  IF++R LAQ M+ K KL  I+K  MSL+EYF KIQQ VDALA++ K V  +DHIL
Sbjct: 120 GTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHIL 179

Query: 163 FILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN 193
           +IL  LG +Y+SM+SII A+    S+ EVM +LLTQE+
Sbjct: 180 YILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQES 217

[Close]

BLAST of Lag0038415 vs. ExPASy TrEMBL
Match: A0A5D3CRZ7 (Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00160 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.9e-28
Identity = 78/172 (45.35%), Postives = 113/172 (65.70%), Query Frame = 0


Query: 33  AKSAVPFMATPESSLTGATVDSSNVSSQIFN--------PDNIISSWLVGSMSDEILQQM 92
           A+ A  ++  P +  + A   SS     + N         D +ISSWL+GSMS++IL QM
Sbjct: 31  AEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQM 90

Query: 93  LNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVG 152
           L+ T+AK+IW  L  I+++R LA+ M+ K KL  ++K  MSL+EYF KIQQ VDALA++ 
Sbjct: 91  LHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASIN 150

Query: 153 KLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS 197
           K +  +DHIL+IL+ LG+EY+S++SII A+    SV + M +LLTQE+ I S
Sbjct: 151 KPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIES 202

[Close]

BLAST of Lag0038415 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 5.3e-04
Identity = 23/98 (23.47%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 42  TPESSLTGATVDSSNVSSQIFNP----DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCL 101
           T +      T+   +  S ++ P    + ++  WL+ SM+D++L+ ++   TA ++W  L
Sbjct: 56  TKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDL 115

Query: 102 NQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQ 136
            ++F      ++ +++ +L T+++ G S++EYF K+ +
Sbjct: 116 RRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSK 153

The following BLAST results are available for this feature:

BLAST of Lag0038415 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048297.1	8.1e-31	50.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	8.1e-31	50.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0045111.1	6.9e-30	47.70	putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK236...	[more]
KAA0053143.1	7.6e-29	50.63	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
KAA0046195.1	1.4e-27	45.35	putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 p...	[more]

BLAST of Lag0038415 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.1e-06	26.15	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Lag0038415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U233	3.9e-31	50.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	3.9e-31	50.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TUB3	3.3e-30	47.70	Putative glutathione S-transferase isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UB21	3.7e-29	50.63	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CRZ7	6.9e-28	45.35	Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Lag0038415 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	5.3e-04	23.47	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 66..191 e-value: 3.1E-19 score: 69.1
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 61..197
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 61..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038415.1	Lag0038415.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0005488	binding