Lag0038370 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038370
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	TolB protein-related isoform 1
Location	chr2: 16012244 .. 16012720 (-)
RNA-Seq Expression	Lag0038370
Synteny	Lag0038370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAACATCCTCTTCATTTTCGCAACTTCTTTCACTTCCCCCCCAATGGACAACATCCCCACCGGCACCGTCATCTTCACCACCGTCGACCGCCTCCAATACGGCTTCGACACCTTCTCTGTTCCCATCAATTCCCCCACCGTCGAACATCGCCTCACCGACGGAATCTCCGTCAATTTCAACGCCCAATTCCTCCAAAACGACCAATCCATTGTCTTCATCTCTGAACGATCCGGCTCCCCTAGAATTTACCTCTCAAATTCCCCCGATTCCGCCCCTAAATTGCTCCCCTCCGCTCCTGGAAGCTGCTTTCACGACCGACCCATCGTCAGAAATGGTCGCCTCTATTTCATCTCCGCTCATGAAAACCCCCACAAGCCCTTAACGAGTTGGTCCGCTCTGTATTCGACCGGGTTGGACGGCTCCGATCCGGTGACCCGGCTCACTCCTCTATTTCAGTCCAGCGGTTTCTGA

mRNA sequence

ATGGACAACATCCTCTTCATTTTCGCAACTTCTTTCACTTCCCCCCCAATGGACAACATCCCCACCGGCACCGTCATCTTCACCACCGTCGACCGCCTCCAATACGGCTTCGACACCTTCTCTGTTCCCATCAATTCCCCCACCGTCGAACATCGCCTCACCGACGGAATCTCCGTCAATTTCAACGCCCAATTCCTCCAAAACGACCAATCCATTGTCTTCATCTCTGAACGATCCGGCTCCCCTAGAATTTACCTCTCAAATTCCCCCGATTCCGCCCCTAAATTGCTCCCCTCCGCTCCTGGAAGCTGCTTTCACGACCGACCCATCGTCAGAAATGGTCGCCTCTATTTCATCTCCGCTCATGAAAACCCCCACAAGCCCTTAACGAGTTGGTCCGCTCTGTATTCGACCGGGTTGGACGGCTCCGATCCGGTGACCCGGCTCACTCCTCTATTTCAGTCCAGCGGTTTCTGA

Coding sequence (CDS)

ATGGACAACATCCTCTTCATTTTCGCAACTTCTTTCACTTCCCCCCCAATGGACAACATCCCCACCGGCACCGTCATCTTCACCACCGTCGACCGCCTCCAATACGGCTTCGACACCTTCTCTGTTCCCATCAATTCCCCCACCGTCGAACATCGCCTCACCGACGGAATCTCCGTCAATTTCAACGCCCAATTCCTCCAAAACGACCAATCCATTGTCTTCATCTCTGAACGATCCGGCTCCCCTAGAATTTACCTCTCAAATTCCCCCGATTCCGCCCCTAAATTGCTCCCCTCCGCTCCTGGAAGCTGCTTTCACGACCGACCCATCGTCAGAAATGGTCGCCTCTATTTCATCTCCGCTCATGAAAACCCCCACAAGCCCTTAACGAGTTGGTCCGCTCTGTATTCGACCGGGTTGGACGGCTCCGATCCGGTGACCCGGCTCACTCCTCTATTTCAGTCCAGCGGTTTCTGA

Protein sequence

MDNILFIFATSFTSPPMDNIPTGTVIFTTVDRLQYGFDTFSVPINSPTVEHRLTDGISVNFNAQFLQNDQSIVFISERSGSPRIYLSNSPDSAPKLLPSAPGSCFHDRPIVRNGRLYFISAHENPHKPLTSWSALYSTGLDGSDPVTRLTPLFQSSGF

Homology

[Close]

BLAST of Lag0038370 vs. NCBI nr
Match: XP_022954120.1 (uncharacterized protein LOC111456480 [Cucurbita moschata])

HSP 1 Score: 242.3 bits (617), Expect = 2.9e-60
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 21  PTGTVIFTTVDRLQYGFDTFSVPINSPTVEHRLTDGISVNFNAQFLQNDQSIVFISERSG 80
           PTGTVIFTTV R QYGFDTFSVP++SPT EH LTDGISVNFNAQF+ N QSIVFISERSG
Sbjct: 4   PTGTVIFTTVGRTQYGFDTFSVPLSSPTTEHCLTDGISVNFNAQFVDNQQSIVFISERSG 63

Query: 81  SPRIYLSNSPDSAPKLLPSAPGSCFHDRPIVRNGRLYFISAHENPHKPLTSWSALYSTGL 140
           SPR+YLSNSP+SAPKLLPSAPGSCFHDRPI+RN RLYFISAHENPHKP TSWSALY TGL
Sbjct: 64  SPRVYLSNSPNSAPKLLPSAPGSCFHDRPIIRNDRLYFISAHENPHKPFTSWSALYFTGL 123

Query: 141 DGSDPVTRLTP 152
           DGSD VTRLTP
Sbjct: 124 DGSDSVTRLTP 134

[Close]

BLAST of Lag0038370 vs. NCBI nr
Match: KAG6575727.1 (hypothetical protein SDJN03_26366, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.3 bits (617), Expect = 2.9e-60
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 21  PTGTVIFTTVDRLQYGFDTFSVPINSPTVEHRLTDGISVNFNAQFLQNDQSIVFISERSG 80
           PTGTVIFTTV R QYGFDTFSVP++SPT EH LTDGISVNFNAQF+ N QSIVFISERSG
Sbjct: 4   PTGTVIFTTVGRTQYGFDTFSVPLSSPTTEHCLTDGISVNFNAQFVDNQQSIVFISERSG 63

Query: 81  SPRIYLSNSPDSAPKLLPSAPGSCFHDRPIVRNGRLYFISAHENPHKPLTSWSALYSTGL 140
           SPR+YLSNSP+SAPKLLPSAPGSCFHDRPI+RN RLYFISAHENPHKP TSWSALY TGL
Sbjct: 64  SPRVYLSNSPNSAPKLLPSAPGSCFHDRPIIRNDRLYFISAHENPHKPFTSWSALYFTGL 123

Query: 141 DGSDPVTRLTP 152
           DGSD VTRLTP
Sbjct: 124 DGSDSVTRLTP 134

[Close]

BLAST of Lag0038370 vs. NCBI nr
Match: KAG7014283.1 (tolB, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.3 bits (617), Expect = 2.9e-60
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 21  PTGTVIFTTVDRLQYGFDTFSVPINSPTVEHRLTDGISVNFNAQFLQNDQSIVFISERSG 80
           PTGTVIFTTV R QYGFDTFSVP++SPT EH LTDGISVNFNAQF+ N QSIVFISERSG
Sbjct: 4   PTGTVIFTTVGRTQYGFDTFSVPLSSPTTEHCLTDGISVNFNAQFVDNQQSIVFISERSG 63

Query: 81  SPRIYLSNSPDSAPKLLPSAPGSCFHDRPIVRNGRLYFISAHENPHKPLTSWSALYSTGL 140
           SPR+YLSNSP+SAPKLLPSAPGSCFHDRPI+RN RLYFISAHENPHKP TSWSALY TGL
Sbjct: 64  SPRVYLSNSPNSAPKLLPSAPGSCFHDRPIIRNDRLYFISAHENPHKPFTSWSALYFTGL 123

Query: 141 DGSDPVTRLTP 152
           DGSD VTRLTP
Sbjct: 124 DGSDSVTRLTP 134

[Close]

BLAST of Lag0038370 vs. NCBI nr
Match: XP_023547812.1 (uncharacterized protein LOC111806666 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.5 bits (615), Expect = 4.9e-60
Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 21  PTGTVIFTTVDRLQYGFDTFSVPINSPTVEHRLTDGISVNFNAQFLQNDQSIVFISERSG 80
           PTGTVIFTTV R QYGFDTFSVP+NSPT EH LTDGISVNFNAQF+ N  SIVFISERSG
Sbjct: 4   PTGTVIFTTVGRTQYGFDTFSVPLNSPTTEHCLTDGISVNFNAQFVDNQLSIVFISERSG 63

Query: 81  SPRIYLSNSPDSAPKLLPSAPGSCFHDRPIVRNGRLYFISAHENPHKPLTSWSALYSTGL 140
           SPR+YLSNSP+SAPKLLPSAPGSCFHDRPI+RN RLYFISAHENPHKP TSWSALY TGL
Sbjct: 64  SPRVYLSNSPNSAPKLLPSAPGSCFHDRPIIRNDRLYFISAHENPHKPFTSWSALYFTGL 123

Query: 141 DGSDPVTRLTP 152
           DGSD VTRLTP
Sbjct: 124 DGSDSVTRLTP 134

[Close]

BLAST of Lag0038370 vs. NCBI nr
Match: XP_022991715.1 (uncharacterized protein LOC111488250 [Cucurbita maxima])

HSP 1 Score: 238.8 bits (608), Expect = 3.2e-59
Identity = 114/131 (87.02%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 21  PTGTVIFTTVDRLQYGFDTFSVPINSPTVEHRLTDGISVNFNAQFLQNDQSIVFISERSG 80
           PTGTVIFTTV R QYGFDTFSVP++SPT EH LTDGISVNFNAQF+ N QSIVFISERSG
Sbjct: 4   PTGTVIFTTVGRTQYGFDTFSVPLSSPTTEHCLTDGISVNFNAQFVDNQQSIVFISERSG 63

Query: 81  SPRIYLSNSPDSAPKLLPSAPGSCFHDRPIVRNGRLYFISAHENPHKPLTSWSALYSTGL 140
           SPR+YLSNSP+SAPKLLPSAPGSCFHDRPI+RN RLYFISAHENPHKP TSWSALY TGL
Sbjct: 64  SPRVYLSNSPNSAPKLLPSAPGSCFHDRPIIRNDRLYFISAHENPHKPFTSWSALYVTGL 123

Query: 141 DGSDPVTRLTP 152
           DGS  VTRLTP
Sbjct: 124 DGSVSVTRLTP 134

The following BLAST results are available for this feature:

BLAST of Lag0038370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954120.1	2.9e-60	87.79	uncharacterized protein LOC111456480 [Cucurbita moschata]	[more]
KAG6575727.1	2.9e-60	87.79	hypothetical protein SDJN03_26366, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014283.1	2.9e-60	87.79	tolB, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023547812.1	4.9e-60	87.79	uncharacterized protein LOC111806666 [Cucurbita pepo subsp. pepo]	[more]
XP_022991715.1	3.2e-59	87.02	uncharacterized protein LOC111488250 [Cucurbita maxima]	[more]

BLAST of Lag0038370 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011042	Six-bladed beta-propeller, TolB-like	GENE3D	2.120.10.30		coord: 18..158 e-value: 1.5E-8 score: 36.2
None	No IPR available	PANTHER	PTHR32161	DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN	coord: 21..151
None	No IPR available	PANTHER	PTHR32161:SF9	TOLB PROTEIN-LIKE PROTEIN	coord: 21..151
None	No IPR available	SUPERFAMILY	82171	DPP6 N-terminal domain-like	coord: 23..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038370.1	Lag0038370.1	mRNA