Lag0038329 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038329
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 15462348 .. 15463010 (+)
RNA-Seq Expression	Lag0038329
Synteny	Lag0038329

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAAGTGCCCAAACGTCGCCACATAAAGCGAAAAGCGGGTTGCGTCAAGGTAGTCCGAACTGATACCCCTCGCCTCCAACCACTGATTCTAAAGAGGAAATGCAGAGAGAGAGGAGCAGGAGAAAAAAGAGGCCGAGGAAAAAGCACGAGAGGAAGCAGAGAAAAAGGCGAAGAAGAAAGGTTGCTCTAGCGAAGAACAGACAGGGGCAAGAGTGTTGCTGCAACATCGGAGGAACCTGACGAACCAGAAGAGCCACAGTTTCCGTATGTTCGCTTCGTCAACAATCTTTACAAAGCAAAATATACTGAGTTGTTGAAAAGAGACTTCCTATTTTAAAGAGGATTTAGTGGTGATCTTCCGCATTTTCTGAGGGCTGGCATTACGAACAACGACTGGGAGTTGTTTTGTGCAAAGCCTGAATCTGTGAACGTGCAGGTGGTGCTTGAGTTTTATGTGAATATTGACAAAGAAGACGGTTTCCAAGTGATTGTTCGAGGTGTTGAGGTCGACTGGAGTCCTGGTGTTATTAACGCCCTGTACAACCTTCAAGATTTCCCCCACGCAACATATAATGAGATGGCTGTGGCGCCATCTAATGAGCAGCTGAGCGATGCTGTGCGGGAAGTTGGCATTGAAGGGGCGCAGTGGTGGCTTTAA

mRNA sequence

ATGCTGGAAGTGCCCAAACGTCGCCACATAAAGCGAAAAGCGGGTTGCGTCAAGGTAGTCCGAACTGATACCCCTCGCCTCCAACCACTGATTCTAAAGAGGAAATGCAGAGAGAGAGGAGCAGGAGAAAAAAGAGGCCGAGGAAAAAGCACGAGAGGAAGCAGAGAAAAAGGCGAAGAAGAAAGAGGATTTAGTGGTGATCTTCCGCATTTTCTGAGGGCTGGCATTACGAACAACGACTGGGAGTTGTTTTGTGCAAAGCCTGAATCTGTGAACGTGCAGGTGGTGCTTGAGTTTTATGTGAATATTGACAAAGAAGACGGTTTCCAAGTGATTGTTCGAGGTGTTGAGGTCGACTGGAGTCCTGGTGTTATTAACGCCCTGTACAACCTTCAAGATTTCCCCCACGCAACATATAATGAGATGGCTGTGGCGCCATCTAATGAGCAGCTGAGCGATGCTGTGCGGGAAGTTGGCATTGAAGGGGCGCAGTGGTGGCTTTAA

Coding sequence (CDS)

ATGCTGGAAGTGCCCAAACGTCGCCACATAAAGCGAAAAGCGGGTTGCGTCAAGGTAGTCCGAACTGATACCCCTCGCCTCCAACCACTGATTCTAAAGAGGAAATGCAGAGAGAGAGGAGCAGGAGAAAAAAGAGGCCGAGGAAAAAGCACGAGAGGAAGCAGAGAAAAAGGCGAAGAAGAAAGAGGATTTAGTGGTGATCTTCCGCATTTTCTGAGGGCTGGCATTACGAACAACGACTGGGAGTTGTTTTGTGCAAAGCCTGAATCTGTGAACGTGCAGGTGGTGCTTGAGTTTTATGTGAATATTGACAAAGAAGACGGTTTCCAAGTGATTGTTCGAGGTGTTGAGGTCGACTGGAGTCCTGGTGTTATTAACGCCCTGTACAACCTTCAAGATTTCCCCCACGCAACATATAATGAGATGGCTGTGGCGCCATCTAATGAGCAGCTGAGCGATGCTGTGCGGGAAGTTGGCATTGAAGGGGCGCAGTGGTGGCTTTAA

Protein sequence

MLEVPKRRHIKRKAGCVKVVRTDTPRLQPLILKRKCRERGAGEKRGRGKSTRGSREKGEEERGFSGDLPHFLRAGITNNDWELFCAKPESVNVQVVLEFYVNIDKEDGFQVIVRGVEVDWSPGVINALYNLQDFPHATYNEMAVAPSNEQLSDAVREVGIEGAQWWL

Homology

[Close]

BLAST of Lag0038329 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-10
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 61  ERGFSGD------LPHFLRAGITNNDWELFCAKPESVNVQVVLEFYVNIDKEDGFQVIVR 120
           E+GF GD       P F+   IT ++W+LFCA PE   V +V EFY N+   D   V VR
Sbjct: 37  EKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPIVPLVREFYANMTNPDDDTVYVR 96

Query: 121 GVEVDWSPGVINALYNLQDFPHATYNEMAVAPSNEQLSDAVREVGIEGAQW 166
           GV+V  S   IN +Y L D P   ++E   A +  +L+  +  V I GA+W
Sbjct: 97  GVQVLLSSEAINTIYGLGD-PIDEHSEFVEAITEPELATVLETVAIAGAEW 146

[Close]

BLAST of Lag0038329 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 0


Query: 61  ERGFSGD------LPHFLRAGITNNDWELFCAKPESVNVQVVLEFYVNIDKEDGFQVIVR 120
           E+GF GD       P F+   IT ++W+LFCA PE +   +V EFY N+   D   V VR
Sbjct: 37  EKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVREFYANMTNPDDDTVYVR 96

Query: 121 GVEVDWSPGVINALYNLQDFPHATYNEMAVAPSNEQLSDAVREVGIEGAQ 165
           GV+V  S   IN +Y L D P   ++E   A +  +L+  +  V I GA+
Sbjct: 97  GVQVPLSAEAINTIYGLGD-PVDEHSEFVEAITEPELATVLETVAIAGAE 145

[Close]

BLAST of Lag0038329 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-08
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 66  GDLPHFLRAGITNNDWELFCAKPESVNVQVVLEFYVNIDKEDGFQVIVRGVEVDWSPGVI 125
           G LP F+   IT ++W+ FCA PE   V +V EFY N+   +   V VRGV+V WS   I
Sbjct: 58  GQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAI 117

Query: 126 NALYNLQDFPHATYNEMAVAPSNEQLSDAVREVGIEGAQW 166
           NA++ L D P   ++E     + + L   +  V   GA+W
Sbjct: 118 NAVFGLGD-PVDEHSEFIQNITQQDLITVLETVAAAGAEW 155

[Close]

BLAST of Lag0038329 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-08
Identity = 38/100 (38.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 66  GDLPHFLRAGITNNDWELFCAKPESVNVQVVLEFYVNIDKEDGFQVIVRGVEVDWSPGVI 125
           G LP F+   IT ++W+ FCA PE   V +V EFY N+       V VRGV+V WS   I
Sbjct: 49  GQLP-FIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAI 108

Query: 126 NALYNLQDFPHATYNEMAVAPSNEQLSDAVREVGIEGAQW 166
           NA++ L D P   ++E     +   L   +  V + GA+W
Sbjct: 109 NAVFGLGD-PVDEHSEFIENITEHDLITVLETVAVAGAEW 146

[Close]

BLAST of Lag0038329 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-07
Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 69  PHFLRAGITNNDWELFCAKPESVNVQVVLEFYVNIDKEDGFQVIVRGVEVDWSPGVINAL 128
           P F+   I  ++W+LFCA PE   V +V EFY N+   D   V +RGV+V  S   IN +
Sbjct: 81  PPFIADVIIQHNWQLFCAHPEDPIVPLVREFYTNMTNPDDDTVYIRGVQVPLSVEAINTI 140

Query: 129 YNLQDFPHATYNEMAVAPSNEQLSDAVREVGIEGAQW 166
           ++L D P   ++E     +  +L   +  V I GA+W
Sbjct: 141 FSLGD-PIDEHSEFVEDITKPELVIVLETVAIVGAEW 176

The following BLAST results are available for this feature:

BLAST of Lag0038329 vs. NCBI nr


Match Name	E-value	Identity	Description
PON65868.1	2.2e-10	39.64	hypothetical protein PanWU01x14_113570 [Parasponia andersonii]	[more]
PON42276.1	1.4e-09	38.18	hypothetical protein PanWU01x14_283280 [Parasponia andersonii]	[more]
PON46472.1	2.1e-08	38.00	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON35554.1	4.6e-08	38.00	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PON70375.1	3.9e-07	36.08	hypothetical protein PanWU01x14_080440 [Parasponia andersonii]	[more]

BLAST of Lag0038329 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038329.1	Lag0038329.1	mRNA