Lag0038307 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCCGATCACTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAGAGACACGGTCTCCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGTAAGCTCCCTTAAACCCTAGGATTTTCTATCTCAATTAGCGGATTTCTCTGGTTGTTTACTGGGCTCTTATGGGTAGCAGATTGCATAAGTTTGAAGTTGCGATAGGACATAAATATCATTCAATTTAAGAGATATTCGTTAAGGAAGGAATCGAGGATCCCCTTGGCCAGCGGATTAGAAAAAAATCTCTTTCAATTGCATAATTTGTATGTCCCAGTTTTGTTTGGGGTTACATGTATCGGGTTGCGAATCGAGATTTTTGGGAGAGAGGAGAGTTAAGACTTACTGACCTCTAATTGCACACTTTCAGGACGGTTGTTTGGTTGATGAGTTAAAATTCTGCCTGCTTTATGCGGGTGCCACCTTTACAAGAGATGATCCTTACTGTTTCAATAGGTTCCTTCTAGCTCTTTTGTGCAAGGGGAAGAAATTCTGTTTTTCAAGAGATGTTAAGTTTGCCCCTATAGGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTGACCTTGTGTGCATGTGGCTGAAATTTCTCTACAGCATTTTTGTGGCAGTGAGTTATTAGCAAGAGAATATTTTTATTATCTTTGTTGGGTTTGAGGGTTATTTTTATTGTTTATCCCAAGTTACCGGATTGTGGTTCTTGGAAGTCAATAGCTATTGTTAAGCTATTGAGGGATTGTTTGTAGTGCGCTATTTGAAGGCTTCCTGTAATCTCCCATCACTCTAGTAGAACCTGCAGTTGCAGAAGACTGGACGTAGTCCCGAGATTGGGGCGAACCAGTATAATTTTTCGGTGTCGTTTTCTTTTCCCTATCTTTTATTATTCGTGACTATTATTATTGGCTTATTTGGCTTAACCTGTGGAAGGGAGATAATTATAATATTATTGATTGTCGTCATTAATATTATATTATATTATTATCCTTTTTTTCTCCCAACAAGTGGTATCAGAGCTTTTGGTTCAGAAGTCATGGGTTTTGTAGAGCCAAGAAATTTCGATGGAGTTACGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACTGACGACGATTGGGAAGCTCTTGATGAAGAGGTAGTTTCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAACTATGGTTAAATTGATGGACGCACTTACAAACAGGTATGAAAAACCCTCTGCGAATTATAAAGTCTACCTAGTTAAGAAATTCTTCAACATGCAAATGGTTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACCACTTTGATTAACCAGTTAAAATCTGTTAAGATATGATATACTGATAAGGTGAATGCTATTCAGTTGTTAACATCTTTACCTGATAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTCGACTGCAAATAACACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCAGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCCATGAATAAAGGTAAAGATAAGGTTAATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGGTGGAAAAATAGGAATGAGGTAGAATGTTTTTACTGCCACAAGAAAGGTCACTTCAAGAGTCGGTGTAGAAAACATAAAGAGGATCAGAAAAGAAAACACGAGGCAAATACAGTGTATGATGCCTTAGTTTGTGTTGAGAGTAACACAAAGTGTAGTAACCACTCATCAGATTGGATATTAGATAGTGCAGCGTCTGTACACATAGTTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTAAGTCTGAAGACAGAGTGTGGAGACAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTGGTAGATGATGGTTACAGGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGCCGGTTAAAGCTGCAGATGATCCAGCAGCAAAGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAAGAGATGGCTATCGTGAATCCCCAATTGTCAGATGCTCGAATGAATTGAAGAAGTCTCTTAGGCGAGTAGAGGCATCAAAGTGGAAGGCCAAAGCAGTTGGTCAGGTCTCTAGCTTGGCAACAGGTTTGAATAGAGGATTCAAGCCATTCTTCTTCGAGAACAGTCGTTCAATTTGGAAGAAGATAACAGGAGTCACCACTTAG ATGTCCCGATCACTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAGAGACACGGTCTCCGCTTCGAGATTGCCTGTTACAAGAACAAGGACGGTTGTTTGGTTGATGAGTTAAAATTCTGCCTGCTTTATGCGGGTGCCACCTTTACAAGAGATGATCCTTACTGTTTCAATAGAGCTTTTGGTTCAGAAGTCATGGGTTTTGTAGAGCCAAGAAATTTCGATGGAGTTACGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACTGACGACGATTGGGAAGCTCTTGATGAAGAGGTAGTTTCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAACTATGGTTAAATTGATGGACGCACTTACAAACAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTCGACTGCAAATAACACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCAGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCCATGAATAAAGGTAAAGATAAGGTTAATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGGTGGAAAAATAGGAATGAGGTAGAATGTTTTTACTGCCACAAGAAAGGTCACTTCAAGAGTCGGTGTAGAAAACATAAAGAGGATCAGAAAAGAAAACACGAGGCAAATACAGTGTATGATGCCTTAGTTTGTGTTGAGAGTAACACAAAGTGTAGTAACCACTCATCAGATTGGATATTAGATAGTGCAGCGTCTGTACACATAGTTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTAAGTCTGAAGACAGAGTGTGGAGACAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTGGTAGATGATGGTTACAGGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGCCGGTTAAAGCTGCAGATGATCCAGCAGCAAAGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAAGAGATGGCTATCGTGAATCCCCAATTGTCAGATGCTCGAATGAATTGAAGAAGTCTCTTAGGCGAGTAGAGGCATCAAAGTGGAAGGCCAAAGCAGTTGGTCAGGTCTCTAGCTTGGCAACAGGTTTGAATAGAGGATTCAAGCCATTCTTCTTCGAGAACAGTCGTTCAATTTGGAAGAAGATAACAGGAGTCACCACTTAG ATGTCCCGATCACTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAGAGACACGGTCTCCGCTTCGAGATTGCCTGTTACAAGAACAAGGACGGTTGTTTGGTTGATGAGTTAAAATTCTGCCTGCTTTATGCGGGTGCCACCTTTACAAGAGATGATCCTTACTGTTTCAATAGAGCTTTTGGTTCAGAAGTCATGGGTTTTGTAGAGCCAAGAAATTTCGATGGAGTTACGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACTGACGACGATTGGGAAGCTCTTGATGAAGAGGTAGTTTCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAACTATGGTTAAATTGATGGACGCACTTACAAACAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTCGACTGCAAATAACACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCAGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCCATGAATAAAGGTAAAGATAAGGTTAATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGGTGGAAAAATAGGAATGAGGTAGAATGTTTTTACTGCCACAAGAAAGGTCACTTCAAGAGTCGGTGTAGAAAACATAAAGAGGATCAGAAAAGAAAACACGAGGCAAATACAGTGTATGATGCCTTAGTTTGTGTTGAGAGTAACACAAAGTGTAGTAACCACTCATCAGATTGGATATTAGATAGTGCAGCGTCTGTACACATAGTTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTAAGTCTGAAGACAGAGTGTGGAGACAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTGGTAGATGATGGTTACAGGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGCCGGTTAAAGCTGCAGATGATCCAGCAGCAAAGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAAGAGATGGCTATCGTGAATCCCCAATTGTCAGATGCTCGAATGAATTGAAGAAGTCTCTTAGGCGAGTAGAGGCATCAAAGTGGAAGGCCAAAGCAGTTGGTCAGGTCTCTAGCTTGGCAACAGGTTTGAATAGAGGATTCAAGCCATTCTTCTTCGAGAACAGTCGTTCAATTTGGAAGAAGATAACAGGAGTCACCACTTAG MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKDGCLVDELKFCLLYAGATFTRDDPYCFNRAFGSEVMGFVEPRNFDGVTKFDGKNFGYWKMQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEVVSSIRMCLSMDVASLVAHETTMVKLMDALTNSWETMKTAVSNSTANNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAMNKGKDKVNEDNEPSSSRKRWKNRNEVECFYCHKKGHFKSRCRKHKEDQKRKHEANTVYDALVCVESNTKCSNHSSDWILDSAASVHIVSDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLVDDGYRCEFGSRQCKLTFGSQVVAVGHRKSTLYKCKLDVAKRSRRQWMPVKAADDPAAKIANFDQSDHDPSIQKQLGSPRDGYRESPIVRCSNELKKSLRRVEASKWKAKAVGQVSSLATGLNRGFKPFFFENSRSIWKKITGVTT Homology
BLAST of Lag0038307 vs. NCBI nr
Match: TKS15174.1 (hypothetical protein D5086_0000036030 [Populus alba]) HSP 1 Score: 201.1 bits (510), Expect = 2.4e-47 Identity = 127/360 (35.28%), Postives = 190/360 (52.78%), Query Frame = 0
BLAST of Lag0038307 vs. NCBI nr
Match: XP_034902342.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC118039689 [Populus alba]) HSP 1 Score: 201.1 bits (510), Expect = 2.4e-47 Identity = 127/360 (35.28%), Postives = 190/360 (52.78%), Query Frame = 0
BLAST of Lag0038307 vs. NCBI nr
Match: CAN65867.1 (hypothetical protein VITISV_034935 [Vitis vinifera]) HSP 1 Score: 198.4 bits (503), Expect = 1.5e-46 Identity = 127/344 (36.92%), Postives = 182/344 (52.91%), Query Frame = 0
BLAST of Lag0038307 vs. NCBI nr
Match: RVX08463.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]) HSP 1 Score: 196.1 bits (497), Expect = 7.6e-46 Identity = 126/344 (36.63%), Postives = 179/344 (52.03%), Query Frame = 0
BLAST of Lag0038307 vs. NCBI nr
Match: TKS02608.1 (hypothetical protein D5086_0000161380 [Populus alba]) HSP 1 Score: 194.9 bits (494), Expect = 1.7e-45 Identity = 133/406 (32.76%), Postives = 198/406 (48.77%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 7.2e-31 Identity = 132/513 (25.73%), Postives = 220/513 (42.88%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy Swiss-Prot
Match: Q23202 (Ribosome maturation protein SBDS OS=Caenorhabditis elegans OX=6239 GN=sbds-1 PE=3 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 6.1e-06 Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 6.1e-06 Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy Swiss-Prot
Match: Q3SWZ6 (Ribosome maturation protein SBDS OS=Bos taurus OX=9913 GN=SBDS PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 1.4e-05 Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy Swiss-Prot
Match: Q9Y3A5 (Ribosome maturation protein SBDS OS=Homo sapiens OX=9606 GN=SBDS PE=1 SV=4) HSP 1 Score: 52.8 bits (125), Expect = 1.4e-05 Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy TrEMBL
Match: A0A4U5QVL9 (CCHC-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000036030 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 1.1e-47 Identity = 127/360 (35.28%), Postives = 190/360 (52.78%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy TrEMBL
Match: A0A2N9J4N9 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59467 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 4.3e-47 Identity = 136/384 (35.42%), Postives = 195/384 (50.78%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy TrEMBL
Match: A5BPB3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034935 PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 7.4e-47 Identity = 127/344 (36.92%), Postives = 182/344 (52.91%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy TrEMBL
Match: A0A438JHN2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3131 PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 3.7e-46 Identity = 126/344 (36.63%), Postives = 179/344 (52.03%), Query Frame = 0
BLAST of Lag0038307 vs. ExPASy TrEMBL
Match: A0A4U5PY83 (CCHC-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000161380 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 8.2e-46 Identity = 133/406 (32.76%), Postives = 198/406 (48.77%), Query Frame = 0
BLAST of Lag0038307 vs. TAIR 10
Match: AT1G43860.1 (sequence-specific DNA binding transcription factors ) HSP 1 Score: 67.4 bits (163), Expect = 3.8e-11 Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 0
BLAST of Lag0038307 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein ) HSP 1 Score: 58.5 bits (140), Expect = 1.8e-08 Identity = 39/145 (26.90%), Postives = 63/145 (43.45%), Query Frame = 0
BLAST of Lag0038307 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.5 bits (132), Expect = 1.5e-07 Identity = 29/84 (34.52%), Postives = 52/84 (61.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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