Lag0038290 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038290
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr2: 14834472 .. 14835359 (+)
RNA-Seq ExpressionLag0038290
SyntenyLag0038290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGAGGTTTGGGGTCACCTCTGGCATTCCGACGTTTGCACAAACTTGTGCATGCTCAAAAACCCCCACGTGGTGTTTTTATCTGAAACGAAGCTCCAACAACGTGAAATGGATTTTGTGCATCATCAGTTGTGCTTCCAGAATTGTTTTACGGTTAATAGTGTTGGTCGTAGGGGTGGCCTTGCTTTGTTATGGGATTCCTCAGTGGGTTTTAGCCTTCTATCTTTTTCCACGCACCATATCAACGGATGGATTGATTGGAATGGTTTGGCTTGGCAACTGACGGGTTTTTACGGGTTTCCAGATCGGGATGCGCACCATCTTTCTTGGAGTCTTCTTCGGCAGCTACATGGTGATCCAAATACTCCTTGGCTTGTCAGTGGAGATTTCAATGCTATCTTAAATCACTCTCAAAAGGATGGTGGTCGACTAACATTTGAGGGAGAGATTGATGCTTTCCAACAAGTACTTGATGAGTGCTCTCTAATGGATCTGGGGTTTGTGGGTGAACTGTTTACGTGGAAAAATCGTCGAGCGGGTAGGGAAACCATATGTGAATGCTTAGATAGAGTTGTGTGTACTTCGGCTTGGCATCAACTCATAATTTTGTGTCTAGGTCAAAAATTTCCCAAGTGGTTTCTCCAAAAACGACTGCAAAACGATGTATTTATAGAAACATTTGAGGTAGTGTCTAGATGTTGTCCGTAACATCTTGACACCACCGACGAAATGAAAATAGGTTTGCAGGGTGAATTTCAAACCGTTGAGACACTTGGTAGTATCACCTCGATGCTACTACTGTGATACTTTTGGCTTGATAGAATGCAGTATTGCGACATCGTCTCCTTAACTCTCCTGGCTTCAAATTCTCTTATGAAACCTTGA

mRNA sequence

ATGTTCGAGGTTTGGGGTCACCTCTGGCATTCCGACGTTTGCACAAACTTGTGCATGCTCAAAAACCCCCACGTGGTGTTTTTATCTGAAACGAAGCTCCAACAACGTGAAATGGATTTTGTGCATCATCAGTTGTGCTTCCAGAATTGTTTTACGGTTAATAGTGTTGGTCGTAGGGGTGGCCTTGCTTTGTTATGGGATTCCTCAGTGGGTTTTAGCCTTCTATCTTTTTCCACGCACCATATCAACGGATGGATTGATTGGAATGGTTTGGCTTGGCAACTGACGGGTTTTTACGGGTTTCCAGATCGGGATGCGCACCATCTTTCTTGGAGTCTTCTTCGGCAGCTACATGGTGATCCAAATACTCCTTGGCTTGTCAGTGGAGATTTCAATGCTATCTTAAATCACTCTCAAAAGGATGGTGGTCGACTAACATTTGAGGGAGAGATTGATGCTTTCCAACAAGTACTTGATGAGTGCTCTCTAATGGATCTGGGAATGCAGTATTGCGACATCGTCTCCTTAACTCTCCTGGCTTCAAATTCTCTTATGAAACCTTGA

Coding sequence (CDS)

ATGTTCGAGGTTTGGGGTCACCTCTGGCATTCCGACGTTTGCACAAACTTGTGCATGCTCAAAAACCCCCACGTGGTGTTTTTATCTGAAACGAAGCTCCAACAACGTGAAATGGATTTTGTGCATCATCAGTTGTGCTTCCAGAATTGTTTTACGGTTAATAGTGTTGGTCGTAGGGGTGGCCTTGCTTTGTTATGGGATTCCTCAGTGGGTTTTAGCCTTCTATCTTTTTCCACGCACCATATCAACGGATGGATTGATTGGAATGGTTTGGCTTGGCAACTGACGGGTTTTTACGGGTTTCCAGATCGGGATGCGCACCATCTTTCTTGGAGTCTTCTTCGGCAGCTACATGGTGATCCAAATACTCCTTGGCTTGTCAGTGGAGATTTCAATGCTATCTTAAATCACTCTCAAAAGGATGGTGGTCGACTAACATTTGAGGGAGAGATTGATGCTTTCCAACAAGTACTTGATGAGTGCTCTCTAATGGATCTGGGAATGCAGTATTGCGACATCGTCTCCTTAACTCTCCTGGCTTCAAATTCTCTTATGAAACCTTGA

Protein sequence

MFEVWGHLWHSDVCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGLAWQLTGFYGFPDRDAHHLSWSLLRQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLGMQYCDIVSLTLLASNSLMKP
Homology
BLAST of Lag0038290 vs. NCBI nr
Match: OMO59710.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-32
Identity = 75/166 (45.18%), Postives = 99/166 (59.64%), Query Frame = 0

Query: 6   GHLWHSDVCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALL 65
           G+ W       L   + P+VVFL ETKL   ++D +  +     CF V++ GR GGLA+ 
Sbjct: 441 GNPWTVRALRELIRRERPNVVFLMETKLPDFKLDSIRRRCKMHACFGVSATGRSGGLAMF 500

Query: 66  WDSSVGFSLLSFSTHHINGWIDWNG--LAWQLTGFYGFPDRDAHHLSWSLLRQ--LHGDP 125
           WD SV   L+SFS HHI+ W+D N     W+LTGFYG  D    HLSW LLRQ  LH + 
Sbjct: 501 WDDSVDLQLISFSQHHIDMWVDENQRLAKWRLTGFYGEADTGRRHLSWDLLRQFVLHDEK 560

Query: 126 NTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG 168
           N  W   GDFN +L  ++KDGGR   E ++ AF++ LD+C L D+G
Sbjct: 561 N--WFCFGDFNELLWQAEKDGGRERPEAQMVAFREALDDCGLYDIG 604

BLAST of Lag0038290 vs. NCBI nr
Match: OMO50714.1 (Endonuclease/exonuclease/phosphatase [Corchorus capsularis])

HSP 1 Score: 147.9 bits (372), Expect = 8.7e-32
Identity = 67/152 (44.08%), Postives = 97/152 (63.82%), Query Frame = 0

Query: 16  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLL 75
           NL +   P  +FLSETK ++ EMD++ ++L + NCFTV  VGR G LALLW + +   +L
Sbjct: 484 NLVLCNKPSFIFLSETKRKKNEMDWIRYRLGYDNCFTVECVGRAGDLALLWSNDISIHIL 543

Query: 76  SFSTHHINGWIDWNGL-AWQLTGFYGFPDRDAHHLSWSLLRQLHGDPNTPWLVSGDFNAI 135
           S+S  HI+  ID N L  W+ TGFYG P  +    SW+LLR LH   + PWL +GDFN I
Sbjct: 544 SYSNSHIDAAIDNNSLNPWRFTGFYGSPQTNHLRNSWNLLRLLHSQFSLPWLCAGDFNEI 603

Query: 136 LNHSQKDGGRLTFEGEIDAFQQVLDECSLMDL 167
           +++ +K GG    E ++  F+ ++++C L DL
Sbjct: 604 ISNEEKHGGAWRLEHQMRLFRDIIEDCELNDL 635

BLAST of Lag0038290 vs. NCBI nr
Match: KAF5443558.1 (hypothetical protein F2P56_036105, partial [Juglans regia])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-30
Identity = 70/158 (44.30%), Postives = 103/158 (65.19%), Query Frame = 0

Query: 13  VCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGF 72
           V  +L   ++P +VFL ETKL+ R M+    +L   +CFTV+ VGR GGL+LLW   +  
Sbjct: 19  VLRDLITNEDPSLVFLQETKLKARAMENCKFRLHLTHCFTVDCVGRSGGLSLLWKGDLRV 78

Query: 73  SLLSFSTHHINGWI-DWNGLAWQLTGFYGFPDRDAHHLSWSLLRQLHGDPNTPWLVSGDF 132
            + SFS HHI+  I D +G  W+ TG YG P+    +L+W+LLR+L+   + PWLV GDF
Sbjct: 79  RVQSFSLHHIDALIQDGDGPEWRFTGVYGNPEVVNRYLTWNLLRRLNSGVDGPWLVGGDF 138

Query: 133 NAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLGMQ 170
           N +L+ ++K GGR   E +++AF+ V+ +CSL DLG +
Sbjct: 139 NELLHFNEKRGGRPRSENQMEAFRNVIFDCSLRDLGFR 176

BLAST of Lag0038290 vs. NCBI nr
Match: XP_018816246.1 (uncharacterized protein LOC108987722 [Juglans regia] >KAF5463276.1 hypothetical protein F2P56_019199 [Juglans regia])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 66/148 (44.59%), Postives = 96/148 (64.86%), Query Frame = 0

Query: 23  PHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHI 82
           P V+FL ET+L  RE++   ++L FQNC  ++S GR+GG+ALLWD  +  S++++S++H+
Sbjct: 29  PDVLFLQETRLSTREVESCKYKLGFQNCLAISSDGRKGGIALLWDVEIDLSVINYSSNHV 88

Query: 83  NGWIDWNGLA---WQLTGFYGFPDRDAHHLSWSLLRQLHGDPNTPWLVSGDFNAILNHSQ 142
           +  I    L    W LT  YGFP+    H SWSLL+ L   P+ PWLV GDFN +L+  +
Sbjct: 89  DAVIKDLRLRKGHWFLTALYGFPETHLRHQSWSLLKSLCRAPDEPWLVLGDFNELLSAHE 148

Query: 143 KDGGRLTFEGEIDAFQQVLDECSLMDLG 168
           K GG    E ++ AF++V+D C L DLG
Sbjct: 149 KSGGNPRPEKQLSAFREVVDVCRLRDLG 176

BLAST of Lag0038290 vs. NCBI nr
Match: XP_018812547.1 (uncharacterized protein LOC108984903 [Juglans regia] >KAF5464528.1 hypothetical protein F2P56_014601 [Juglans regia])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-29
Identity = 66/155 (42.58%), Postives = 100/155 (64.52%), Query Frame = 0

Query: 16  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLL 75
           +L   + P V+FL ET+L  REM+   ++L FQNC  ++S GR+GG+ALLWD+ +  S++
Sbjct: 22  DLIQREGPDVLFLQETRLSTREMESCKYKLGFQNCLGISSQGRKGGIALLWDAEIDLSVI 81

Query: 76  SFSTHHINGWIDWNGLA---WQLTGFYGFPDRDAHHLSWSLLRQLHGDPNTPWLVSGDFN 135
           ++S++H++  I  + L    W LT  YGFP+    H SW+L++ L  D + PWLV GDFN
Sbjct: 82  NYSSNHVDAIIKDSCLRQGHWFLTAIYGFPETHLRHHSWNLIKSLCRDNDKPWLVLGDFN 141

Query: 136 AILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG 168
            IL+  +K GG    E ++  F++V+D C L DLG
Sbjct: 142 KILHAHEKSGGNPRPERQLRDFREVVDVCRLRDLG 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OMO59710.13.0e-3245.18reverse transcriptase [Corchorus capsularis][more]
OMO50714.18.7e-3244.08Endonuclease/exonuclease/phosphatase [Corchorus capsularis][more]
KAF5443558.12.8e-3044.30hypothetical protein F2P56_036105, partial [Juglans regia][more]
XP_018816246.11.1e-2944.59uncharacterized protein LOC108987722 [Juglans regia] >KAF5463276.1 hypothetical ... [more]
XP_018812547.11.4e-2942.58uncharacterized protein LOC108984903 [Juglans regia] >KAF5464528.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 6..172
e-value: 7.3E-17
score: 63.9
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 12..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038290.1Lag0038290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity